PDB 5D8B
X-RAY DIFFRACTION3.63 Å0 chains112 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
Loading viewer...
Domains by Chain
Chain Aview chain
2 domainsChain AAview chain
1 domainChain ABview chain
2 domainsChain ACview chain
1 domainChain Bview chain
1 domainChain BAview chain
1 domainChain BBview chain
2 domainsChain BCview chain
2 domainsChain Cview chain
1 domainChain CAview chain
1 domainChain CBview chain
2 domainsChain CCview chain
1 domainChain Dview chain
1 domainChain DAview chain
2 domainsChain DBview chain
1 domainChain DCview chain
1 domainChain Eview chain
2 domainsChain EAview chain
1 domainChain EBview chain
1 domainChain ECview chain
2 domainsChain Fview chain
2 domainsChain FAview chain
2 domainsChain FBview chain
1 domainChain FCview chain
1 domainChain Gview chain
2 domainsChain GAview chain
1 domainChain GBview chain
1 domainChain GCview chain
1 domainChain Hview chain
1 domainChain HAview chain
1 domainChain HBview chain
1 domainChain HCview chain
1 domainChain Iview chain
1 domainChain IAview chain
2 domainsChain IBview chain
1 domainChain ICview chain
1 domainChain Jview chain
1 domainChain JAview chain
1 domainChain JBview chain
1 domainChain JCview chain
1 domainChain Kview chain
1 domainChain KAview chain
1 domainChain KBview chain
1 domainChain KCview chain
1 domainChain Lview chain
1 domainChain LAview chain
1 domainChain LBview chain
1 domainChain LCview chain
1 domainChain Mview chain
1 domainChain MAview chain
1 domainChain MBview chain
1 domainChain MCview chain
1 domainChain Nview chain
1 domainChain NAview chain
1 domainChain NBview chain
1 domainChain NCview chain
1 domainChain Oview chain
1 domainChain OAview chain
1 domainChain OBview chain
1 domainChain OCview chain
1 domainChain Pview chain
1 domainChain PAview chain
1 domainChain PBview chain
2 domainsChain PCview chain
1 domainChain Qview chain
1 domainChain QAview chain
1 domainChain QBview chain
1 domainChain QCview chain
1 domainChain Rview chain
1 domainChain RAview chain
1 domainChain RBview chain
1 domainChain Sview chain
1 domainChain SAview chain
1 domainChain SBview chain
1 domainChain SCview chain
1 domainChain Tview chain
2 domainsChain TAview chain
1 domainChain TBview chain
1 domainChain TCview chain
1 domainChain Uview chain
1 domainChain UAview chain
1 domainChain UBview chain
1 domainChain Vview chain
1 domainChain VBview chain
1 domainChain Wview chain
1 domainChain WAview chain
2 domainsChain WBview chain
1 domainChain Xview chain
1 domainChain XAview chain
1 domainChain XBview chain
1 domainChain Yview chain
1 domainChain YAview chain
1 domainChain YBview chain
1 domainChain Zview chain
1 domainChain ZAview chain
1 domainChain ZBview chain
2 domainsAll Domains (112)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e5d8bA1 | A:127-272 | Ribosomal_L2_C | 4 → 4.1 → 4.1.1 |
| 2 | A | e5d8bA2 | A:2-126 | Ribosomal_L2 | 2 → 2.1 → 2.1.1 |
| 3 | AA | e5d8bAA1 | AA:1-48 | Ribosomal_L34 | 3074 → 3074.1 → 3074.1.1 |
| 4 | AB | e5d8bAB1 | AB:83-175 | Ribosomal_L6 | 318 → 318.1 → 318.1.1 |
| 5 | AB | e5d8bAB2 | AB:2-82 | Ribosomal_L6 | 318 → 318.1 → 318.1.1 |
| 6 | AC | e5d8bAC1 | AC:2-209 | Ribosomal_S4,S4 | 221 → 221.1 → 221.1.2 |
| 7 | B | e5d8bB1 | B:1-204 | Ribosomal_L3 | 1 → 1.1 → 1.1.7 |
| 8 | BA | e5d8bBA1 | BA:2-64 | Ribosomal_L35p | 4281 → 4281.1 → 4281.1.1 |
| 9 | BB | e5d8bBB1 | BB:54-145 | Ribosomal_L9_C | 523 → 523.1 → 523.1.1 |
| 10 | BB | e5d8bBB2 | BB:1-53 | Ribosomal_L9_N | 4076 → 4076.1 → 4076.1.1 |
| 11 | BC | e5d8bBC1 | BC:5-73 | Ribosomal_S5 | 330 → 330.1 → 330.1.1 |
| 12 | BC | e5d8bBC2 | BC:74-155 | Ribosomal_S5_C | 212 → 212.1 → 212.1.1 |
| 13 | C | e5d8bC1 | C:6-207 | Ribosomal_L4 | 7559 → 7559.1 → 7559.1.1 |
| 14 | CA | e5d8bCA1 | CA:7-240 | Ribosomal_S2 | 2007 → 2007.6 → 2007.6.1 |
| 15 | CB | e5d8bCB1 | CB:1-69 | Ribosomal_L11_N | 3781 → 3781.1 → 3781.1.1 |
| 16 | CB | e5d8bCB2 | CB:70-147 | Ribosomal_L11 | 101 → 101.1 → 101.1.16 |
| 17 | CC | e5d8bCC1 | CC:1-101 | Ribosomal_S6 | 304 → 304.12 → 304.12.1 |
| 18 | D | e5d8bD1 | D:2-182 | Ribosomal_L5,Ribosomal_L5_C | 882 → 882.1 → 882.1.1 |
| 19 | DA | e5d8bDA1 | DA:2-106 | KH_2 | 327 → 327.11 → 327.11.1 |
| 20 | DA | e5d8bDA2 | DA:107-207 | Ribosomal_S3_C | 230 → 230.2 → 230.2.1 |
| 21 | DB | e5d8bDB1 | DB:25-161 | Ribosomal_L13 | 2490 → 2490.2 → 2490.2.1 |
| 22 | DC | e5d8bDC1 | DC:2-156 | Ribosomal_S7 | 167 → 167.1 → 167.1.1 |
| 23 | E | e5d8bE1 | E:2-82 | Ribosomal_L6 | 318 → 318.1 → 318.1.1 |
| 24 | E | e5d8bE2 | E:83-175 | Ribosomal_L6 | 318 → 318.1 → 318.1.1 |
| 25 | EA | e5d8bEA1 | EA:2-209 | Ribosomal_S4,S4 | 221 → 221.1 → 221.1.2 |
| 26 | EB | e5d8bEB1 | EB:1-122 | Ribosomal_L14 | 3174 → 3174.1 → 3174.1.1 |
| 27 | EC | e5d8bEC1 | EC:1-66 | Ribosomal_S8 | 320 → 320.2 → 320.2.1 |
| 28 | EC | e5d8bEC2 | EC:67-138 | Ribosomal_S8 | 4988 → 4988.1 → 4988.1.1 |
| 29 | F | e5d8bF1 | F:54-145 | Ribosomal_L9_C | 523 → 523.1 → 523.1.1 |
| 30 | F | e5d8bF2 | F:1-53 | Ribosomal_L9_N | 4076 → 4076.1 → 4076.1.1 |
| 31 | FA | e5d8bFA1 | FA:74-155 | Ribosomal_S5_C | 212 → 212.1 → 212.1.1 |
| 32 | FA | e5d8bFA2 | FA:5-73 | Ribosomal_S5 | 330 → 330.1 → 330.1.1 |
| 33 | FB | e5d8bFB1 | FB:5-150 | Ribosomal_L27A, PF29471 | 2490 → 2490.3 → 2490.3.1 |
| 34 | FC | e5d8bFC1 | FC:2-128 | Ribosomal_S9 | 212 → 212.1 → 212.1.1 |
| 35 | G | e5d8bG1 | G:72-147 | Ribosomal_L11 | 101 → 101.1 → 101.1.16 |
| 36 | G | e5d8bG2 | G:1-71 | Ribosomal_L11_N | 3781 → 3781.1 → 3781.1.1 |
| 37 | GA | e5d8bGA1 | GA:1-101 | Ribosomal_S6 | 304 → 304.12 → 304.12.1 |
| 38 | GB | e5d8bGB1 | GB:6-139 | 325.1.5.0 | 325 → 325.1 → 325.1.5 |
| 39 | GC | e5d8bGC1 | GC:3-100 | Ribosomal_S10 | 304 → 304.44 → 304.44.1 |
| 40 | H | e5d8bH1 | H:25-161 | Ribosomal_L13 | 2490 → 2490.2 → 2490.2.1 |
| 41 | HA | e5d8bHA1 | HA:2-156 | Ribosomal_S7 | 167 → 167.1 → 167.1.1 |
| 42 | HB | e5d8bHB1 | HB:2-118 | Ribosomal_L17 | 218 → 218.3 → 218.3.1 |
| 43 | HC | e5d8bHC1 | HC:11-124 | Ribosomal_S11 | 2484 → 2484.1 → 2484.1.1 |
| 44 | I | e5d8bI1 | I:1-122 | Ribosomal_L14 | 3174 → 3174.1 → 3174.1.1 |
| 45 | IA | e5d8bIA1 | IA:1-66 | Ribosomal_S8 | 320 → 320.2 → 320.2.1 |
| 46 | IA | e5d8bIA2 | IA:67-138 | Ribosomal_S8 | 4988 → 4988.1 → 4988.1.1 |
| 47 | IB | e5d8bIB1 | IB:3-112 | Ribosomal_L18p | 2484 → 2484.1 → 2484.1.1 |
| 48 | IC | e5d8bIC1 | IC:4-125 | Ribosom_S12_S23 | 2 → 2.1 → 2.1.1 |
| 49 | J | e5d8bJ1 | J:5-150 | Ribosomal_L27A, PF29471 | 2490 → 2490.3 → 2490.3.1 |
| 50 | JA | e5d8bJA1 | JA:2-128 | Ribosomal_S9 | 212 → 212.1 → 212.1.1 |
| 51 | JB | e5d8bJB1 | JB:1-137 | Ribosomal_L19 | 4 → 4.1 → 4.1.1 |
| 52 | JC | e5d8bJC1 | JC:2-118 | Ribosomal_S13 | 102 → 102.2 → 102.2.1 |
| 53 | K | e5d8bK1 | K:6-139 | 325.1.5.0 | 325 → 325.1 → 325.1.5 |
| 54 | KA | e5d8bKA1 | KA:3-100 | Ribosomal_S10 | 304 → 304.44 → 304.44.1 |
| 55 | KB | e5d8bKB1 | KB:2-118 | Ribosomal_L20 | 143 → 143.2 → 143.2.1 |
| 56 | KC | e5d8bKC1 | KC:2-61 | Ribosomal_S14 | 377 → 377.1 → 377.1.1 |
| 57 | L | e5d8bL1 | L:2-118 | Ribosomal_L17 | 218 → 218.3 → 218.3.1 |
| 58 | LA | e5d8bLA1 | LA:11-124 | Ribosomal_S11 | 2484 → 2484.1 → 2484.1.1 |
| 59 | LB | e5d8bLB1 | LB:1-101 | Ribosomal_L21p | 4186 → 4186.1 → 4186.1.1 |
| 60 | LC | e5d8bLC1 | LC:2-89 | Ribosomal_S15 | 616 → 616.1 → 616.1.1 |
| 61 | M | e5d8bM1 | M:3-112 | Ribosomal_L18p | 2484 → 2484.1 → 2484.1.1 |
| 62 | MA | e5d8bMA1 | MA:4-125 | Ribosom_S12_S23 | 2 → 2.1 → 2.1.1 |
| 63 | MB | e5d8bMB1 | MB:1-112 | Ribosomal_L22 | 218 → 218.2 → 218.2.1 |
| 64 | MC | e5d8bMC1 | MC:1-83 | Ribosomal_S16 | 837 → 837.1 → 837.1.1 |
| 65 | N | e5d8bN1 | N:1-137 | Ribosomal_L19 | 4 → 4.1 → 4.1.1 |
| 66 | NA | e5d8bNA1 | NA:2-118 | Ribosomal_S13 | 102 → 102.2 → 102.2.1 |
| 67 | NB | e5d8bNB1 | NB:3-94 | Ribosomal_L23 | 304 → 304.109 → 304.109.1 |
| 68 | NC | e5d8bNC1 | NC:2-100 | Ribosomal_S17 | 2 → 2.1 → 2.1.1 |
| 69 | O | e5d8bO1 | O:2-118 | Ribosomal_L20 | 143 → 143.2 → 143.2.1 |
| 70 | OA | e5d8bOA1 | OA:2-61 | Ribosomal_S14 | 377 → 377.1 → 377.1.1 |
| 71 | OB | e5d8bOB1 | OB:2-101 | KOW,ribosomal_L24 | 4 → 4.1 → 4.1.1 |
| 72 | OC | e5d8bOC1 | OC:19-88 | Ribosomal_S18 | 101 → 101.1 → 101.1.1 |
| 73 | P | e5d8bP1 | P:1-101 | Ribosomal_L21p | 4186 → 4186.1 → 4186.1.1 |
| 74 | PA | e5d8bPA1 | PA:2-89 | Ribosomal_S15 | 616 → 616.1 → 616.1.1 |
| 75 | PB | e5d8bPB1 | PB:3-92 | Ribosomal_L25p | 239 → 239.1 → 239.1.1 |
| 76 | PB | e5d8bPB2 | PB:93-189 | Ribosomal_TL5_C | 240 → 240.1 → 240.1.1 |
| 77 | PC | e5d8bPC1 | PC:4-81 | Ribosomal_S19 | 838 → 838.1 → 838.1.1 |
| 78 | Q | e5d8bQ1 | Q:1-112 | Ribosomal_L22 | 218 → 218.2 → 218.2.1 |
| 79 | QA | e5d8bQA1 | QA:1-83 | Ribosomal_S16 | 837 → 837.1 → 837.1.1 |
| 80 | QB | e5d8bQB1 | QB:10-85 | Ribosomal_L27 | 325 → 325.1 → 325.1.8 |
| 81 | QC | e5d8bQC1 | QC:8-106 | Ribosomal_S20p | 604 → 604.9 → 604.9.1 |
| 82 | R | e5d8bR1 | R:3-94 | Ribosomal_L23 | 304 → 304.109 → 304.109.1 |
| 83 | RA | e5d8bRA1 | RA:2-100 | Ribosomal_S17 | 2 → 2.1 → 2.1.1 |
| 84 | RB | e5d8bRB1 | RB:8-95 | Ribosomal_L28 | 4232 → 4232.1 → 4232.1.1 |
| 85 | S | e5d8bS1 | S:2-101 | KOW,ribosomal_L24 | 4 → 4.1 → 4.1.1 |
| 86 | SA | e5d8bSA1 | SA:19-88 | Ribosomal_S18 | 101 → 101.1 → 101.1.1 |
| 87 | SB | e5d8bSB1 | SB:1-62 | Ribosomal_L29 | 192 → 192.4 → 192.4.1 |
| 88 | SC | e5d8bSC1 | SC:36-65 | Ribosomal_L31 | 4987 → 4987.1 → 4987.1.1 |
| 89 | T | e5d8bT1 | T:94-189 | Ribosomal_TL5_C | 240 → 240.1 → 240.1.1 |
| 90 | T | e5d8bT2 | T:3-93 | Ribosomal_L25p | 239 → 239.1 → 239.1.1 |
| 91 | TA | e5d8bTA1 | TA:4-81 | Ribosomal_S19 | 838 → 838.1 → 838.1.1 |
| 92 | TB | e5d8bTB1 | TB:1-59 | Ribosomal_L30 | 887 → 887.1 → 887.1.1 |
| 93 | TC | e5d8bTC1 | TC:36-65 | Ribosomal_L31 | 4987 → 4987.1 → 4987.1.1 |
| 94 | U | e5d8bU1 | U:10-85 | Ribosomal_L27 | 325 → 325.1 → 325.1.8 |
| 95 | UA | e5d8bUA1 | UA:8-106 | Ribosomal_S20p | 604 → 604.9 → 604.9.1 |
| 96 | UB | e5d8bUB1 | UB:2-53 | Ribosomal_L32p | 375 → 375.1 → 375.1.1 |
| 97 | V | e5d8bV1 | V:8-95 | Ribosomal_L28 | 4232 → 4232.1 → 4232.1.1 |
| 98 | VB | e5d8bVB1 | VB:9-52 | Ribosomal_L33 | 375 → 375.1 → 375.1.1 |
| 99 | W | e5d8bW1 | W:1-62 | Ribosomal_L29 | 192 → 192.4 → 192.4.1 |
| 100 | WA | e5d8bWA1 | WA:2-126 | Ribosomal_L2 | 2 → 2.1 → 2.1.1 |
| 101 | WA | e5d8bWA2 | WA:127-272 | Ribosomal_L2_C | 4 → 4.1 → 4.1.1 |
| 102 | WB | e5d8bWB1 | WB:1-48 | Ribosomal_L34 | 3074 → 3074.1 → 3074.1.1 |
| 103 | X | e5d8bX1 | X:1-59 | Ribosomal_L30 | 887 → 887.1 → 887.1.1 |
| 104 | XA | e5d8bXA1 | XA:1-204 | Ribosomal_L3 | 1 → 1.1 → 1.1.7 |
| 105 | XB | e5d8bXB1 | XB:2-64 | Ribosomal_L35p | 4281 → 4281.1 → 4281.1.1 |
| 106 | Y | e5d8bY1 | Y:2-53 | Ribosomal_L32p | 375 → 375.1 → 375.1.1 |
| 107 | YA | e5d8bYA1 | YA:6-207 | Ribosomal_L4 | 7559 → 7559.1 → 7559.1.1 |
| 108 | YB | e5d8bYB1 | YB:7-240 | Ribosomal_S2 | 2007 → 2007.6 → 2007.6.1 |
| 109 | Z | e5d8bZ1 | Z:9-52 | Ribosomal_L33 | 375 → 375.1 → 375.1.1 |
| 110 | ZA | e5d8bZA1 | ZA:2-182 | Ribosomal_L5,Ribosomal_L5_C | 882 → 882.1 → 882.1.1 |
| 111 | ZB | e5d8bZB1 | ZB:2-106 | KH_2 | 327 → 327.11 → 327.11.1 |
| 112 | ZB | e5d8bZB2 | ZB:107-207 | Ribosomal_S3_C | 230 → 230.2 → 230.2.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors