PDB 5FMF
ELECTRON MICROSCOPY0 chains54 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain 1view chain
2 domainsChain 2view chain
2 domainsChain Aview chain
9 domainsChain Bview chain
7 domainsChain Cview chain
2 domainsChain Dview chain
1 domainChain Eview chain
2 domainsChain Fview chain
1 domainChain Gview chain
2 domainsChain Hview chain
1 domainChain Iview chain
2 domainsChain Jview chain
1 domainChain Kview chain
1 domainChain Lview chain
1 domainChain Mview chain
2 domainsChain Oview chain
2 domainsChain Pview chain
3 domainsChain Qview chain
2 domainsChain Rview chain
2 domainsChain Sview chain
2 domainsChain Uview chain
1 domainChain Vview chain
2 domainsChain Wview chain
1 domainChain Xview chain
1 domainChain Yview chain
2 domainsAll Domains (54)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | 1 | e5fmf11 | 1:549-785 | Helicase_C, ERCC3_RAD25_C | 2004 → 2004.1 → 2004.1.1 |
| 2 | 1 | e5fmf12 | 1:294-538 | ResIII | 2004 → 2004.1 → 2004.1.1 |
| 3 | 2 | e5fmf21 | 2:256-309 | TFIIS_C | 375 → 375.1 → 375.1.1 |
| 4 | 2 | e5fmf22 | 2:136-255 | TFIIS_M | 103 → 103.4 → 103.4.1 |
| 5 | A | e5fmfA1 | A:337-374,A:436-519 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 6 | A | e5fmfA2 | A:375-435 | RNA_pol_Rpb1_2 | 275 → 275.1 → 275.1.1 |
| 7 | A | e5fmfA3 | A:1060-1102,A:1301-1455 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 8 | A | e5fmfA4 | A:663-871 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 9 | A | e5fmfA5 | A:520-662 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 10 | A | e5fmfA6 | A:872-1059 | RNA_pol_Rpb1_6 | 4957 → 4957.1 → 4957.1.1 |
| 11 | A | e5fmfA7 | A:1103-1131,A:1243-1300 | 4956.1.1.0 | 4956 → 4956.1 → 4956.1.1 |
| 12 | A | e5fmfA8 | A:3-336 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 13 | A | e5fmfA9 | A:1132-1242 | RNA_pol_Rpb1_7 | 4955 → 4955.1 → 4955.1.1 |
| 14 | B | e5fmfB1 | B:1098-1224 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 15 | B | e5fmfB2 | B:814-850,B:975-1097 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 16 | B | e5fmfB3 | B:219-404 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 17 | B | e5fmfB4 | B:631-813 | 4042.1.1.0 | 4042 → 4042.1 → 4042.1.1 |
| 18 | B | e5fmfB5 | B:20-218,B:405-541 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 19 | B | e5fmfB6 | B:851-974 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 20 | B | e5fmfB7 | B:542-630 | RNA_pol_Rpb2_4 | 4961 → 4961.1 → 4961.1.1 |
| 21 | C | e5fmfC1 | C:42-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 22 | C | e5fmfC2 | C:3-41,C:173-268 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 23 | D | e5fmfD1 | D:3-221 | RNA_pol_Rpb4 | 102 → 102.1 → 102.1.1 |
| 24 | E | e5fmfE1 | E:2-142 | RNA_pol_Rpb5_N | 2008 → 2008.3 → 2008.3.1 |
| 25 | E | e5fmfE2 | E:143-215 | RNA_pol_Rpb5_C | 840 → 840.1 → 840.1.1 |
| 26 | F | e5fmfF1 | F:72-155 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.1 |
| 27 | G | e5fmfG1 | G:69-171 | S1 | 2 → 2.1 → 2.1.1 |
| 28 | G | e5fmfG2 | G:1-68 | SHS2_Rpb7-N | 872 → 872.1 → 872.1.1 |
| 29 | H | e5fmfH1 | H:2-146 | RNA_pol_Rpb8 | 2 → 2.1 → 2.1.1 |
| 30 | I | e5fmfI1 | I:50-120 | TFIIS_C | 375 → 375.1 → 375.1.1 |
| 31 | I | e5fmfI2 | I:2-49 | RNA_POL_M_15KD | 375 → 375.1 → 375.1.1 |
| 32 | J | e5fmfJ1 | J:1-65 | RNA_pol_N | 101 → 101.4 → 101.4.1 |
| 33 | K | e5fmfK1 | K:1-115 | RNA_pol_L_2 | 305 → 305.1 → 305.1.1 |
| 34 | L | e5fmfL1 | L:25-70 | DNA_RNApol_7kD | 375 → 375.1 → 375.1.1 |
| 35 | M | e5fmfM1 | M:2-61 | TFIIA | 104 → 104.1 → 104.1.1 |
| 36 | M | e5fmfM2 | M:228-286 | TFIIA | 74 → 74.1 → 74.1.1 |
| 37 | O | e5fmfO1 | O:4-54 | TFIIA_gamma_N | 104 → 104.1 → 104.1.1 |
| 38 | O | e5fmfO2 | O:55-120 | TFIIA_gamma_C | 74 → 74.1 → 74.1.1 |
| 39 | P | e5fmfP1 | P:67-213 | TFIIB | 101 → 101.1 → 101.1.10 |
| 40 | P | e5fmfP2 | P:233-340 | TFIIB | 101 → 101.1 → 101.1.10 |
| 41 | P | e5fmfP3 | P:17-68 | TF_Zn_Ribbon | 375 → 375.1 → 375.1.1 |
| 42 | Q | e5fmfQ1 | Q:157-240 | TBP | 331 → 331.1 → 331.1.1 |
| 43 | Q | e5fmfQ2 | Q:61-156 | TBP | 331 → 331.1 → 331.1.1 |
| 44 | R | e5fmfR1 | R:12-95 | TFIIE_alpha | 101 → 101.1 → 101.1.2 |
| 45 | R | e5fmfR2 | R:119-160 | 375.1.1.0 | 375 → 375.1 → 375.1.1 |
| 46 | S | e5fmfS1 | S:125-188 | TFIIE_beta | 101 → 101.1 → 101.1.2 |
| 47 | S | e5fmfS2 | S:189-247 | TFA2_Winged_2 | 101 → 101.1 → 101.1.2 |
| 48 | U | e5fmfU1 | U:94-396 | TFIIF_alpha | 59 → 59.1 → 59.1.1 |
| 49 | V | e5fmfV1 | V:54-227 | TFIIF_beta_N | 59 → 59.1 → 59.1.1 |
| 50 | V | e5fmfV2 | V:291-359 | TFIIF_beta | 101 → 101.1 → 101.1.2 |
| 51 | W | e5fmfW01 | W:447-508 | Tfb2_C | 4340 → 4340.1 → 4340.1.1 |
| 52 | X | e5fmfX1 | X:2-64 | Tfb5 | 4340 → 4340.1 → 4340.1.1 |
| 53 | Y | e5fmfY2 | Y:504-718 | Helicase_C_2 | 2004 → 2004.1 → 2004.1.1 |
| 54 | Y | e5fmfY3 | Y:18-244 | DEAD_2 | 2004 → 2004.1 → 2004.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors