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PDB 5IY9

ELECTRON MICROSCOPY0 chains54 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

All Domains (54)

#ChainDomain IDRangeFamilyClassification
10e5iy9010:54-241Ssl12006 → 2006.1 → 2006.1.6
21e5iy9111:1-62Tfb54340 → 4340.1 → 4340.1.1
32e5iy9212:388-459Tfb2_C4340 → 4340.1 → 4340.1.1
43e5iy9313:5-72,3:100-231Tfb42006 → 2006.1 → 2006.1.6
5Ae5iy9A1A:895-1082RNA_pol_Rpb1_64957 → 4957.1 → 4957.1.1
6Ae5iy9A2A:351-388,A:450-533RNA_pol_Rpb1_21 → 1.1 → 1.1.2
7Ae5iy9A3A:1165-1297RNA_pol_Rpb1_74955 → 4955.1 → 4955.1.1
8Ae5iy9A4A:686-894RNA_pol_Rpb1_5,RNA_pol_Rpb1_44958 → 4958.1 → 4958.1.1
9Ae5iy9A5A:10-157,A:180-350RNA_pol_Rpb1_14246 → 4246.1 → 4246.1.1
10Ae5iy9A6A:389-449RNA_pol_Rpb1_2275 → 275.1 → 275.1.1
11Ae5iy9A7A:1136-1164,A:1298-1360RNA_pol_Rpb1_54956 → 4956.1 → 4956.1.1
12Ae5iy9A8A:1083-1135,A:1361-1485RNA_pol_Rpb1_54954 → 4954.1 → 4954.1.1
13Ae5iy9A9A:534-685RNA_pol_Rpb1_34959 → 4959.1 → 4959.1.1
14Be5iy9B1B:1054-1174RNA_pol_Rpb2_6,RNA_pol_Rpb2_74043 → 4043.1 → 4043.1.1
15Be5iy9B2B:619-7684042.1.1.04042 → 4042.1 → 4042.1.1
16Be5iy9B3B:201-391RNA_pol_Rpb2_24041 → 4041.1 → 4041.1.1
17Be5iy9B4B:529-618RNA_pol_Rpb2_44961 → 4961.1 → 4961.1.1
18Be5iy9B5B:769-805,B:930-1053RNA_pol_Rpb2_61 → 1.1 → 1.1.2
19Be5iy9B6B:10-67,B:87-200,B:392-528RNA_pol_Rpb2_1,RNA_pol_Rpb2_34010 → 4010.1 → 4010.1.1
20Be5iy9B7B:806-929RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
21Ce5iy9C1C:43-178RNA_pol_A_bac240 → 240.2 → 240.2.1
22Ce5iy9C2C:1-42,C:179-275RNA_pol_L305 → 305.1 → 305.1.1
23De5iy9D1D:14-142RNA_pol_Rpb4102 → 102.1 → 102.1.1
24Ee5iy9E1E:139-210RNA_pol_Rpb5_C840 → 840.1 → 840.1.1
25Ee5iy9E2E:1-138RNA_pol_Rpb5_N2008 → 2008.3 → 2008.3.1
26Fe5iy9F1F:42-127RNA_pol_Rpb6152 → 152.1 → 152.1.1
27Ge5iy9G1G:78-171S12 → 2.1 → 2.1.1
28Ge5iy9G2G:1-77SHS2_Rpb7-N872 → 872.1 → 872.1.1
29He5iy9H1H:1-150RNA_pol_Rpb82 → 2.1 → 2.1.1
30Ie5iy9I1I:60-125TFIIS_C375 → 375.1 → 375.1.1
31Ie5iy9I2I:1-59RNA_POL_M_15KD375 → 375.1 → 375.1.1
32Je5iy9J1J:1-67RNA_pol_N101 → 101.4 → 101.4.1
33Ke5iy9K1K:1-117RNA_pol_L_2305 → 305.1 → 305.1.1
34Le5iy9L1L:13-58DNA_RNApol_7kD375 → 375.1 → 375.1.1
35Me5iy9M1M:209-316TFIIB101 → 101.1 → 101.1.10
36Me5iy9M2M:68-208TFIIB101 → 101.1 → 101.1.10
37Me5iy9M3M:7-67TF_Zn_Ribbon375 → 375.1 → 375.1.1
38Ne5iy9N1N:9-51,N:308-321TFIIA104 → 104.1 → 104.1.1
39Ne5iy9N2N:322-376TFIIA74 → 74.1 → 74.1.1
40Oe5iy9O1O:1-53TFIIA_gamma_N104 → 104.1 → 104.1.1
41Oe5iy9O2O:54-99TFIIA_gamma_C74 → 74.1 → 74.1.1
42Pe5iy9P1P:153-255TBP331 → 331.1 → 331.1.1
43Pe5iy9P2P:256-337TBP331 → 331.1 → 331.1.1
44Qe5iy9Q1Q:104-204TF_Zn_Ribbon375 → 375.1 → 375.1.1
45Qe5iy9Q2Q:11-103TFIIE_alpha101 → 101.1 → 101.1.2
46Re5iy9R1R:75-146TFIIE_beta101 → 101.1 → 101.1.2
47Re5iy9R2R:147-206TFA2_Winged_2101 → 101.1 → 101.1.2
48Re5iy9R3R:208-239101.1.2.0101 → 101.1 → 101.1.2
49Se5iy9S1S:5-54,S:93-180TFIIF_alpha59 → 59.1 → 59.1.1
50Te5iy9T1T:2-119TFIIF_beta_N59 → 59.1 → 59.1.1
51Te5iy9T2T:175-238TFIIF_beta101 → 101.1 → 101.1.2
52Ve5iy9V1V:493-718Helicase_C, ERCC3_RAD25_C2004 → 2004.1 → 2004.1.1
53Ve5iy9V2V:244-492ResIII2004 → 2004.1 → 2004.1.1
54We5iy9W1W:11-243DEAD_22004 → 2004.1 → 2004.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors