Home/PDB

PDB 5J88

X-RAY DIFFRACTION3.32 Å0 chains113 ECOD domains
View in RCSB PDB

3D Structure(domains colored, ligands/nucleic acids shown)

Loading viewer...

Domains by Chain

All Domains (113)

#ChainDomain IDRangeFamilyClassification
1ABe5j88AB1AB:4-227Ribosomal_S22007 → 2007.6 → 2007.6.1
2ACe5j88AC1AC:106-207Ribosomal_S3_C230 → 230.2 → 230.2.1
3ACe5j88AC2AC:2-105KH_2327 → 327.11 → 327.11.1
4ADe5j88AD1AD:2-206Ribosomal_S4,S4221 → 221.1 → 221.1.2
5AEe5j88AE1AE:10-78Ribosomal_S5330 → 330.1 → 330.1.1
6AEe5j88AE2AE:79-164Ribosomal_S5_C212 → 212.1 → 212.1.1
7AFe5j88AF1AF:1-106Ribosomal_S6304 → 304.12 → 304.12.1
8AGe5j88AG1AG:2-152Ribosomal_S7167 → 167.1 → 167.1.1
9AHe5j88AH1AH:2-66Ribosomal_S8320 → 320.2 → 320.2.1
10AHe5j88AH2AH:67-130Ribosomal_S84988 → 4988.1 → 4988.1.1
11AIe5j88AI1AI:4-130Ribosomal_S9212 → 212.1 → 212.1.1
12AJe5j88AJ1AJ:4-102Ribosomal_S10304 → 304.44 → 304.44.1
13AKe5j88AK1AK:13-129Ribosomal_S112484 → 2484.1 → 2484.1.1
14ALe5j88AL1AL:2-124Ribosom_S12_S232 → 2.1 → 2.1.1
15AMe5j88AM1AM:2-115Ribosomal_S13102 → 102.2 → 102.2.1
16ANe5j88AN1AN:2-101Ribosomal_S14377 → 377.1 → 377.1.1
17AOe5j88AO1AO:2-89Ribosomal_S15616 → 616.1 → 616.1.1
18APe5j88AP1AP:1-82Ribosomal_S16837 → 837.1 → 837.1.1
19AQe5j88AQ1AQ:4-83Ribosomal_S172 → 2.1 → 2.1.1
20ARe5j88AR1AR:20-74Ribosomal_S18101 → 101.1 → 101.1.1
21ASe5j88AS1AS:3-81Ribosomal_S19838 → 838.1 → 838.1.1
22ATe5j88AT1AT:2-87Ribosomal_S20p604 → 604.9 → 604.9.1
23AUe5j88AU1AU:2-57Ribosomal_S213666 → 3666.1 → 3666.1.1
24BBe5j88BB1BB:4-227Ribosomal_S22007 → 2007.6 → 2007.6.1
25BCe5j88BC1BC:106-207Ribosomal_S3_C230 → 230.2 → 230.2.1
26BCe5j88BC2BC:2-105KH_2327 → 327.11 → 327.11.1
27BDe5j88BD1BD:2-206Ribosomal_S4,S4221 → 221.1 → 221.1.2
28BEe5j88BE1BE:10-76Ribosomal_S5330 → 330.1 → 330.1.1
29BEe5j88BE2BE:77-159Ribosomal_S5_C212 → 212.1 → 212.1.1
30BFe5j88BF1BF:1-100Ribosomal_S6304 → 304.12 → 304.12.1
31BGe5j88BG1BG:2-152Ribosomal_S7167 → 167.1 → 167.1.1
32BHe5j88BH1BH:2-66Ribosomal_S8320 → 320.2 → 320.2.1
33BHe5j88BH2BH:67-130Ribosomal_S84988 → 4988.1 → 4988.1.1
34BIe5j88BI1BI:4-130Ribosomal_S9212 → 212.1 → 212.1.1
35BJe5j88BJ1BJ:5-102Ribosomal_S10304 → 304.44 → 304.44.1
36BKe5j88BK1BK:13-129Ribosomal_S112484 → 2484.1 → 2484.1.1
37BLe5j88BL1BL:2-124Ribosom_S12_S232 → 2.1 → 2.1.1
38BMe5j88BM1BM:2-115Ribosomal_S13102 → 102.2 → 102.2.1
39BNe5j88BN1BN:2-101Ribosomal_S14377 → 377.1 → 377.1.1
40BOe5j88BO1BO:2-89Ribosomal_S15616 → 616.1 → 616.1.1
41BPe5j88BP1BP:1-82Ribosomal_S16837 → 837.1 → 837.1.1
42BQe5j88BQ1BQ:4-83Ribosomal_S172 → 2.1 → 2.1.1
43BRe5j88BR1BR:20-74Ribosomal_S18101 → 101.1 → 101.1.1
44BSe5j88BS1BS:3-81Ribosomal_S19838 → 838.1 → 838.1.1
45BTe5j88BT1BT:3-87Ribosomal_S20p604 → 604.9 → 604.9.1
46BUe5j88BU1BU:2-57Ribosomal_S213666 → 3666.1 → 3666.1.1
47C0e5j88C01C0:2-59Ribosomal_L30887 → 887.1 → 887.1.1
48C1e5j88C11C1:2-57Ribosomal_L32p375 → 375.1 → 375.1.1
49C2e5j88C21C2:4-53Ribosomal_L33375 → 375.1 → 375.1.1
50C3e5j88C31C3:1-46Ribosomal_L343074 → 3074.1 → 3074.1.1
51C4e5j88C41C4:2-65Ribosomal_L35p4281 → 4281.1 → 4281.1.1
52C5e5j88C51C5:1-38Ribosomal_L36919 → 919.1 → 919.1.1
53CCe5j88CC1CC:126-272Ribosomal_L2_C4 → 4.1 → 4.1.1
54CCe5j88CC2CC:2-125Ribosomal_L22 → 2.1 → 2.1.1
55CDe5j88CD1CD:1-209Ribosomal_L31 → 1.1 → 1.1.7
56CEe5j88CE1CE:1-201Ribosomal_L47559 → 7559.1 → 7559.1.1
57CFe5j88CF1CF:2-178Ribosomal_L5,Ribosomal_L5_C882 → 882.1 → 882.1.1
58CGe5j88CG1CG:2-82Ribosomal_L6318 → 318.1 → 318.1.1
59CGe5j88CG2CG:83-177Ribosomal_L6318 → 318.1 → 318.1.1
60CHe5j88CH2CH:1-55Ribosomal_L9_N4076 → 4076.1 → 4076.1.1
61CHe5j88CH3CH:56-149Ribosomal_L9_C523 → 523.1 → 523.1.1
62CJe5j88CJ1CJ:73-141Ribosomal_L11101 → 101.1 → 101.1.16
63CJe5j88CJ2CJ:8-72Ribosomal_L11_N3781 → 3781.1 → 3781.1.1
64CKe5j88CK1CK:1-142Ribosomal_L132490 → 2490.2 → 2490.2.1
65CLe5j88CL1CL:1-122Ribosomal_L143174 → 3174.1 → 3174.1.1
66CMe5j88CM1CM:1-144Ribosomal_L27A, PF294712490 → 2490.3 → 2490.3.1
67CNe5j88CN1CN:1-136325.1.5.0325 → 325.1 → 325.1.5
68COe5j88CO1CO:1-120Ribosomal_L17218 → 218.3 → 218.3.1
69CPe5j88CP1CP:2-117Ribosomal_L18p2484 → 2484.1 → 2484.1.1
70CQe5j88CQ1CQ:2-115Ribosomal_L194 → 4.1 → 4.1.1
71CRe5j88CR1CR:2-118Ribosomal_L20143 → 143.2 → 143.2.1
72CSe5j88CS1CS:1-103Ribosomal_L21p4186 → 4186.1 → 4186.1.1
73CTe5j88CT1CT:1-110Ribosomal_L22218 → 218.2 → 218.2.1
74CUe5j88CU1CU:1-93Ribosomal_L23304 → 304.109 → 304.109.1
75CVe5j88CV1CV:2-103KOW,ribosomal_L244 → 4.1 → 4.1.1
76CWe5j88CW1CW:1-94Ribosomal_L25p239 → 239.1 → 239.1.1
77CXe5j88CX1CX:11-85325.1.8.0325 → 325.1 → 325.1.8
78CYe5j88CY1CY:2-78Ribosomal_L284232 → 4232.1 → 4232.1.1
79CZe5j88CZ1CZ:2-63Ribosomal_L29192 → 192.4 → 192.4.1
80D0e5j88D01D0:2-59Ribosomal_L30887 → 887.1 → 887.1.1
81D1e5j88D11D1:2-57Ribosomal_L32p375 → 375.1 → 375.1.1
82D2e5j88D21D2:4-54Ribosomal_L33375 → 375.1 → 375.1.1
83D3e5j88D31D3:1-46Ribosomal_L343074 → 3074.1 → 3074.1.1
84D4e5j88D41D4:2-65Ribosomal_L35p4281 → 4281.1 → 4281.1.1
85D5e5j88D51D5:1-38Ribosomal_L36919 → 919.1 → 919.1.1
86DCe5j88DC1DC:126-272Ribosomal_L2_C4 → 4.1 → 4.1.1
87DCe5j88DC2DC:2-125Ribosomal_L22 → 2.1 → 2.1.1
88DDe5j88DD1DD:1-209Ribosomal_L31 → 1.1 → 1.1.7
89DEe5j88DE1DE:1-201Ribosomal_L47559 → 7559.1 → 7559.1.1
90DFe5j88DF1DF:2-178Ribosomal_L5,Ribosomal_L5_C882 → 882.1 → 882.1.1
91DGe5j88DG1DG:2-82Ribosomal_L6318 → 318.1 → 318.1.1
92DGe5j88DG2DG:83-177Ribosomal_L6318 → 318.1 → 318.1.1
93DHe5j88DH2DH:1-55Ribosomal_L9_N4076 → 4076.1 → 4076.1.1
94DHe5j88DH1DH:56-149Ribosomal_L9_C523 → 523.1 → 523.1.1
95DIe5j88DI1DI:2-136Ribosomal_L10304 → 304.60 → 304.60.1
96DJe5j88DJ1DJ:8-72Ribosomal_L11_N3781 → 3781.1 → 3781.1.1
97DJe5j88DJ2DJ:73-141Ribosomal_L11101 → 101.1 → 101.1.16
98DKe5j88DK1DK:1-142Ribosomal_L132490 → 2490.2 → 2490.2.1
99DLe5j88DL1DL:1-123Ribosomal_L143174 → 3174.1 → 3174.1.1
100DMe5j88DM1DM:1-144Ribosomal_L27A, PF294712490 → 2490.3 → 2490.3.1
101DNe5j88DN1DN:1-136325.1.5.0325 → 325.1 → 325.1.5
102DOe5j88DO1DO:1-125Ribosomal_L17218 → 218.3 → 218.3.1
103DPe5j88DP1DP:1-117Ribosomal_L18p2484 → 2484.1 → 2484.1.1
104DQe5j88DQ1DQ:2-115Ribosomal_L194 → 4.1 → 4.1.1
105DRe5j88DR1DR:2-118Ribosomal_L20143 → 143.2 → 143.2.1
106DSe5j88DS1DS:1-103Ribosomal_L21p4186 → 4186.1 → 4186.1.1
107DTe5j88DT1DT:1-110Ribosomal_L22218 → 218.2 → 218.2.1
108DUe5j88DU1DU:1-93Ribosomal_L23304 → 304.109 → 304.109.1
109DVe5j88DV1DV:2-103KOW,ribosomal_L244 → 4.1 → 4.1.1
110DWe5j88DW1DW:1-94Ribosomal_L25p239 → 239.1 → 239.1.1
111DXe5j88DX1DX:10-85325.1.8.0325 → 325.1 → 325.1.8
112DYe5j88DY1DY:2-78Ribosomal_L284232 → 4232.1 → 4232.1.1
113DZe5j88DZ1DZ:2-63Ribosomal_L29192 → 192.4 → 192.4.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors