PDB 5JPQ
ELECTRON MICROSCOPY0 chains59 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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2 domainsAll Domains (59)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | 0 | e5jpq01 | 0:2-149 | Ribosomal_S24e | 304 → 304.109 → 304.109.1 |
| 2 | 1 | e5jpq11 | 1:7-53 | Ribosomal_S28e | 2 → 2.1 → 2.1.1 |
| 3 | a | e5jpqa1 | a:54-235 | AAA, GTP_EFTU | 2004 → 2004.1 → 2004.1.1 |
| 4 | a | e5jpqa2 | a:929-1016 | RIBIOP_C | 1 → 1.1 → 1.1.7 |
| 5 | a | e5jpqa3 | a:818-928 | RIBIOP_C | 1 → 1.1 → 1.1.8 |
| 6 | a | e5jpqa4 | a:236-305,a:614-636,a:787-817 | AARP2CN | 1 → 1.1 → 1.1.7 |
| 7 | b | e5jpqb1 | b:15-167 | Ribosomal_S4,S4 | 221 → 221.1 → 221.1.2 |
| 8 | c | e5jpqc1 | c:83-274 | Brix | 7502 → 7502.1 → 7502.1.1 |
| 9 | d | e5jpqd1 | d:46-169 | Fcf1 | 2006 → 2006.1 → 2006.1.4 |
| 10 | e | e5jpqe1 | e:28-252 | EMG1 | 2488 → 2488.1 → 2488.1.1 |
| 11 | f | e5jpqf1 | f:28-252 | EMG1 | 2488 → 2488.1 → 2488.1.1 |
| 12 | g | e5jpqg1 | g:118-209 | KRR1-like_KH2 | 327 → 327.11 → 327.11.2 |
| 13 | g | e5jpqg2 | g:36-117 | KH_8 | 327 → 327.11 → 327.11.2 |
| 14 | G | e5jpqG1 | G:2106-3241 | 109.4.1.0 | 109 → 109.4 → 109.4.1 |
| 15 | h | e5jpqh1 | h:36-117 | KH_8 | 327 → 327.11 → 327.11.2 |
| 16 | h | e5jpqh2 | h:118-209 | KRR1-like_KH2 | 327 → 327.11 → 327.11.2 |
| 17 | i | e5jpqi1 | i:10-211 | TmcA_N | 2004 → 2004.1 → 2004.1.1 |
| 18 | i | e5jpqi2 | i:212-502 | Helicase_RecD | 2004 → 2004.1 → 2004.1.1 |
| 19 | i | e5jpqi3 | i:503-804 | GNAT_acetyltr_2 | 213 → 213.1 → 213.1.1 |
| 20 | i | e5jpqi4 | i:834-934 | tRNA_bind_2 | 101 → 101.1 → 101.1.1 |
| 21 | I | e5jpqI1 | I:350-684 | WD40, ANAPC4_WD40, Beta-prop_WDR36-Utp21_2nd | 5 → 5.1 → 5.1.4 |
| 22 | I | e5jpqI2 | I:20-349 | ANAPC4_WD40, Beta-prop_WDR36-Utp21_1st | 5 → 5.1 → 5.1.4 |
| 23 | j | e5jpqj1 | j:10-60,j:113-211 | TmcA_N | 2004 → 2004.1 → 2004.1.1 |
| 24 | j | e5jpqj2 | j:834-934 | tRNA_bind_2 | 101 → 101.1 → 101.1.1 |
| 25 | j | e5jpqj3 | j:212-227,j:259-327,j:368-432,j:469-502 | Helicase_RecD | 2004 → 2004.1 → 2004.1.1 |
| 26 | j | e5jpqj4 | j:503-660,j:721-804 | GNAT_acetyltr_2 | 213 → 213.1 → 213.1.1 |
| 27 | k | e5jpqk1 | k:18-36,k:58-88,k:232-293 | Ribosomal_L1 | 898 → 898.1 → 898.1.1 |
| 28 | k | e5jpqk2 | k:89-183 | Ribosomal_L1 | 2007 → 2007.25 → 2007.25.1 |
| 29 | o | e5jpqo1 | o:15-116 | Ribosomal_S3Ae | 239 → 239.5 → 239.5.1 |
| 30 | o | e5jpqo2 | o:117-229 | Ribosomal_S3Ae | 230 → 230.6 → 230.6.1 |
| 31 | p | e5jpqp1 | p:2-118 | RS4NT | 221 → 221.1 → 221.1.2 |
| 32 | p | e5jpqp2 | p:178-260 | 40S_S4_C | 4 → 4.1 → 4.1.1 |
| 33 | p | e5jpqp3 | p:119-177 | Ribosomal_S4e | 2 → 2.1 → 2.1.1 |
| 34 | q | e5jpqq1 | q:39-225 | Ribosomal_S7 | 167 → 167.1 → 167.1.1 |
| 35 | r | e5jpqr1 | r:1-235 | Ribosomal_S6e | 239 → 239.1 → 239.1.1 |
| 36 | s | e5jpqs1 | s:2-109 | Ribosomal_S7e | 327 → 327.10 → 327.10.1 |
| 37 | s | e5jpqs2 | s:110-187 | Ribosomal_S7e | 327 → 327.10 → 327.10.1 |
| 38 | S | e5jpqS1 | S:135-262 | Nop | 606 → 606.1 → 606.1.1 |
| 39 | S | e5jpqS2 | S:3-134 | Nop5_56-rel_N_Arc | 3407 → 3407.1 → 3407.1.1 |
| 40 | S | e5jpqS3 | S:263-377 | Nop | 102 → 102.1 → 102.1.4 |
| 41 | t | e5jpqt1 | t:2-208 | Ribosomal_S8e | 3174 → 3174.1 → 3174.1.1 |
| 42 | T | e5jpqT1 | T:3-134 | Nop5_56-rel_N_Arc | 3407 → 3407.1 → 3407.1.1 |
| 43 | T | e5jpqT2 | T:135-262 | Nop | 606 → 606.1 → 606.1.1 |
| 44 | T | e5jpqT3 | T:263-377 | Nop | 102 → 102.1 → 102.1.4 |
| 45 | u | e5jpqu1 | u:21-185 | Ribosomal_S4,S4 | 221 → 221.1 → 221.1.2 |
| 46 | U | e5jpqU1 | U:7-128 | Ribosomal_L7Ae | 301 → 301.1 → 301.1.1 |
| 47 | v | e5jpqv1 | v:83-151 | Ribosomal_S15 | 616 → 616.1 → 616.1.1 |
| 48 | v | e5jpqv2 | v:35-82 | Ribosomal_S13_N | 101 → 101.40 → 101.40.1 |
| 49 | V | e5jpqV1 | V:7-128 | Ribosomal_L7Ae | 301 → 301.1 → 301.1.1 |
| 50 | w | e5jpqw1 | w:2-129 | Ribosomal_S11 | 2484 → 2484.1 → 2484.1.1 |
| 51 | W | e5jpqW1 | W:5-231 | Fibrillarin | 2003 → 2003.1 → 2003.1.5 |
| 52 | x | e5jpqx1 | x:10-143 | Ribosomal_S9 | 212 → 212.1 → 212.1.1 |
| 53 | X | e5jpqX1 | X:5-231 | Fibrillarin | 2003 → 2003.1 → 2003.1.5 |
| 54 | y | e5jpqy1 | y:1-157 | Ribosomal_S17,Ribosomal_S17_N | 2 → 2.1 → 2.1.1 |
| 55 | Y | e5jpqY1 | Y:130-361,Y:398-442,Y:474-570 | WD40 | 5 → 5.1 → 5.1.4 |
| 56 | z | e5jpqz1 | z:68-130 | Ribosomal_S8 | 4988 → 4988.1 → 4988.1.1 |
| 57 | z | e5jpqz2 | z:4-67 | Ribosomal_S8 | 320 → 320.2 → 320.2.1 |
| 58 | Z | e5jpqZ1 | Z:7-182,Z:287-361 | RTC | 328 → 328.6 → 328.6.1 |
| 59 | Z | e5jpqZ2 | Z:183-287 | RTC_insert | 2485 → 2485.2 → 2485.2.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors