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PDB 5NDJ

X-RAY DIFFRACTION3.15 Å0 chains106 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

All Domains (106)

#ChainDomain IDRangeFamilyClassification
111e5ndj11111:2-126Ribosomal_L22 → 2.1 → 2.1.1
211e5ndj11211:127-274Ribosomal_L2_C4 → 4.1 → 4.1.1
312e5ndj12112:4-240Ribosomal_S22007 → 2007.6 → 2007.6.1
415e5ndj15115:1-138Ribosomal_L132490 → 2490.2 → 2490.2.1
519e5ndj19119:127-274Ribosomal_L2_C4 → 4.1 → 4.1.1
619e5ndj19219:2-126Ribosomal_L22 → 2.1 → 2.1.1
71Ae5ndj1A11A:3-101Ribosomal_S10304 → 304.44 → 304.44.1
81Ee5ndj1E11E:4-240Ribosomal_S22007 → 2007.6 → 2007.6.1
91Ie5ndj1I11I:3-101Ribosomal_S10304 → 304.44 → 304.44.1
1021e5ndj21121:1-205Ribosomal_L31 → 1.1 → 1.1.7
1122e5ndj22122:107-207Ribosomal_S3_C230 → 230.2 → 230.2.1
1222e5ndj22222:2-106KH_2327 → 327.11 → 327.11.1
1325e5ndj25125:1-122Ribosomal_L143174 → 3174.1 → 3174.1.1
1429e5ndj29129:1-205Ribosomal_L31 → 1.1 → 1.1.7
152Ae5ndj2A12A:11-126Ribosomal_S112484 → 2484.1 → 2484.1.1
162Ee5ndj2E12E:2-105KH_2327 → 327.11 → 327.11.1
172Ee5ndj2E22E:106-206Ribosomal_S3_C230 → 230.2 → 230.2.1
182Ie5ndj2I12I:11-126Ribosomal_S112484 → 2484.1 → 2484.1.1
1931e5ndj31131:6-207Ribosomal_L47559 → 7559.1 → 7559.1.1
2032e5ndj32132:2-209Ribosomal_S4,S4221 → 221.1 → 221.1.2
2135e5ndj35135:1-150Ribosomal_L27A, PF294712490 → 2490.3 → 2490.3.1
2239e5ndj39139:1-208Ribosomal_L47559 → 7559.1 → 7559.1.1
233Ae5ndj3A13A:5-129Ribosom_S12_S232 → 2.1 → 2.1.1
243Ee5ndj3E13E:2-209Ribosomal_S4,S4221 → 221.1 → 221.1.2
253Ie5ndj3I13I:5-126Ribosom_S12_S232 → 2.1 → 2.1.1
2641e5ndj41141:2-182Ribosomal_L5,Ribosomal_L5_C882 → 882.1 → 882.1.1
2742e5ndj42142:74-155Ribosomal_S5_C212 → 212.1 → 212.1.1
2842e5ndj42242:5-73Ribosomal_S5330 → 330.1 → 330.1.1
2945e5ndj45145:2-141Ribosomal_L16325 → 325.1 → 325.1.5
3049e5ndj49149:2-182Ribosomal_L5,Ribosomal_L5_C882 → 882.1 → 882.1.1
314Ae5ndj4A14A:2-117Ribosomal_S13102 → 102.2 → 102.2.1
324Ee5ndj4E14E:5-73Ribosomal_S5330 → 330.1 → 330.1.1
334Ee5ndj4E24E:74-155Ribosomal_S5_C212 → 212.1 → 212.1.1
344Ie5ndj4I14I:2-117Ribosomal_S13102 → 102.2 → 102.2.1
3551e5ndj51151:83-175Ribosomal_L6318 → 318.1 → 318.1.1
3651e5ndj51251:2-82Ribosomal_L6318 → 318.1 → 318.1.1
3752e5ndj52152:1-101Ribosomal_S6304 → 304.12 → 304.12.1
3855e5ndj55155:2-118Ribosomal_L17218 → 218.3 → 218.3.1
3958e5ndj58158:1-138Ribosomal_L132490 → 2490.2 → 2490.2.1
4059e5ndj59159:2-82Ribosomal_L6318 → 318.1 → 318.1.1
4159e5ndj59259:83-171Ribosomal_L6318 → 318.1 → 318.1.1
425Ae5ndj5A15A:4-61Ribosomal_S14377 → 377.1 → 377.1.1
435Ee5ndj5E15E:1-101Ribosomal_S6304 → 304.12 → 304.12.1
445Ie5ndj5I15I:2-61Ribosomal_S14377 → 377.1 → 377.1.1
4561e5ndj61161:54-146Ribosomal_L9_C523 → 523.1 → 523.1.1
4661e5ndj61261:1-53Ribosomal_L9_N4076 → 4076.1 → 4076.1.1
4762e5ndj62162:2-156Ribosomal_S7167 → 167.1 → 167.1.1
4865e5ndj65165:2-112Ribosomal_L18p2484 → 2484.1 → 2484.1.1
4968e5ndj68168:1-122Ribosomal_L143174 → 3174.1 → 3174.1.1
5069e5ndj69169:1-55Ribosomal_L9_N4076 → 4076.1 → 4076.1.1
5169e5ndj69269:56-146Ribosomal_L9_C523 → 523.1 → 523.1.1
526Ae5ndj6A16A:2-89Ribosomal_S15616 → 616.1 → 616.1.1
536Ee5ndj6E16E:2-153Ribosomal_S7167 → 167.1 → 167.1.1
546Ie5ndj6I16I:2-89Ribosomal_S15616 → 616.1 → 616.1.1
5572e5ndj72172:1-66Ribosomal_S8320 → 320.2 → 320.2.1
5672e5ndj72272:67-138Ribosomal_S84988 → 4988.1 → 4988.1.1
5775e5ndj75175:1-137Ribosomal_L194 → 4.1 → 4.1.1
5878e5ndj78178:1-147Ribosomal_L27A, PF294712490 → 2490.3 → 2490.3.1
597Ae5ndj7A17A:1-84Ribosomal_S16837 → 837.1 → 837.1.1
607Ee5ndj7E17E:67-138Ribosomal_S84988 → 4988.1 → 4988.1.1
617Ee5ndj7E27E:1-66Ribosomal_S8320 → 320.2 → 320.2.1
627Ie5ndj7I17I:1-84Ribosomal_S16837 → 837.1 → 837.1.1
6382e5ndj82182:2-125Ribosomal_S9212 → 212.1 → 212.1.1
6485e5ndj85185:2-118Ribosomal_L20143 → 143.2 → 143.2.1
6588e5ndj88188:1-141Ribosomal_L16325 → 325.1 → 325.1.5
668Ae5ndj8A18A:2-100Ribosomal_S172 → 2.1 → 2.1.1
678Ee5ndj8E18E:2-128Ribosomal_S9212 → 212.1 → 212.1.1
688Ie5ndj8I18I:2-101Ribosomal_S172 → 2.1 → 2.1.1
6995e5ndj95195:1-101Ribosomal_L21p4186 → 4186.1 → 4186.1.1
7098e5ndj98198:1-118Ribosomal_L17218 → 218.3 → 218.3.1
719Ae5ndj9A19A:20-88Ribosomal_S18101 → 101.1 → 101.1.1
729Ie5ndj9I19I:21-87Ribosomal_S18101 → 101.1 → 101.1.1
73A5e5ndjA51A5:1-113Ribosomal_L22218 → 218.2 → 218.2.1
74A8e5ndjA81A8:2-112Ribosomal_L18p2484 → 2484.1 → 2484.1.1
75AAe5ndjAA1AA:7-84Ribosomal_S19838 → 838.1 → 838.1.1
76AIe5ndjAI1AI:4-83Ribosomal_S19838 → 838.1 → 838.1.1
77B5e5ndjB51B5:3-94Ribosomal_L23304 → 304.109 → 304.109.1
78B8e5ndjB81B8:1-129Ribosomal_L194 → 4.1 → 4.1.1
79BAe5ndjBA1BA:8-106Ribosomal_S20p604 → 604.9 → 604.9.1
80BIe5ndjBI1BI:8-106Ribosomal_S20p604 → 604.9 → 604.9.1
81C5e5ndjC51C5:2-105KOW,ribosomal_L244 → 4.1 → 4.1.1
82C8e5ndjC81C8:2-118Ribosomal_L20143 → 143.2 → 143.2.1
83D5e5ndjD51D5:1-92Ribosomal_L25p239 → 239.1 → 239.1.1
84D5e5ndjD52D5:93-169Ribosomal_TL5_C240 → 240.1 → 240.1.1
85D8e5ndjD81D8:1-101Ribosomal_L21p4186 → 4186.1 → 4186.1.1
86E5e5ndjE51E5:2-85325.1.8.0325 → 325.1 → 325.1.8
87E8e5ndjE81E8:1-112Ribosomal_L22218 → 218.2 → 218.2.1
88F5e5ndjF51F5:2-95Ribosomal_L284232 → 4232.1 → 4232.1.1
89F8e5ndjF81F8:1-94Ribosomal_L23304 → 304.109 → 304.109.1
90G5e5ndjG51G5:4-70Ribosomal_L29192 → 192.4 → 192.4.1
91G8e5ndjG81G8:3-105KOW,ribosomal_L244 → 4.1 → 4.1.1
92H5e5ndjH51H5:2-60Ribosomal_L30887 → 887.1 → 887.1.1
93H8e5ndjH81H8:93-171Ribosomal_TL5_C240 → 240.1 → 240.1.1
94H8e5ndjH82H8:1-92Ribosomal_L25p239 → 239.1 → 239.1.1
95I5e5ndjI51I5:1-63Ribosomal_L314987 → 4987.1 → 4987.1.1
96I8e5ndjI81I8:2-84325.1.8.0325 → 325.1 → 325.1.8
97J5e5ndjJ51J5:2-57Ribosomal_L32p375 → 375.1 → 375.1.1
98J8e5ndjJ81J8:2-96Ribosomal_L284232 → 4232.1 → 4232.1.1
99K8e5ndjK81K8:2-69Ribosomal_L29192 → 192.4 → 192.4.1
100L5e5ndjL51L5:1-47Ribosomal_L343074 → 3074.1 → 3074.1.1
101L8e5ndjL81L8:2-58Ribosomal_L30887 → 887.1 → 887.1.1
102M5e5ndjM51M5:2-65Ribosomal_L35p4281 → 4281.1 → 4281.1.1
103M8e5ndjM81M8:1-66Ribosomal_L314987 → 4987.1 → 4987.1.1
104N8e5ndjN81N8:3-57Ribosomal_L32p375 → 375.1 → 375.1.1
105P8e5ndjP81P8:1-47Ribosomal_L343074 → 3074.1 → 3074.1.1
106Q8e5ndjQ81Q8:2-61Ribosomal_L35p4281 → 4281.1 → 4281.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors