PDB 5NDJ
X-RAY DIFFRACTION3.15 Å0 chains106 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain 11view chain
2 domainsChain 12view chain
1 domainChain 15view chain
1 domainChain 19view chain
2 domainsChain 1Aview chain
1 domainChain 1Eview chain
1 domainChain 1Iview chain
1 domainChain 21view chain
1 domainChain 22view chain
2 domainsChain 25view chain
1 domainChain 29view chain
1 domainChain 2Aview chain
1 domainChain 2Eview chain
2 domainsChain 2Iview chain
1 domainChain 31view chain
1 domainChain 32view chain
1 domainChain 35view chain
1 domainChain 39view chain
1 domainChain 3Aview chain
1 domainChain 3Eview chain
1 domainChain 3Iview chain
1 domainChain 41view chain
1 domainChain 42view chain
2 domainsChain 45view chain
1 domainChain 49view chain
1 domainChain 4Aview chain
1 domainChain 4Eview chain
2 domainsChain 4Iview chain
1 domainChain 51view chain
2 domainsChain 52view chain
1 domainChain 55view chain
1 domainChain 58view chain
1 domainChain 59view chain
2 domainsChain 5Aview chain
1 domainChain 5Eview chain
1 domainChain 5Iview chain
1 domainChain 61view chain
2 domainsChain 62view chain
1 domainChain 65view chain
1 domainChain 68view chain
1 domainChain 69view chain
2 domainsChain 6Aview chain
1 domainChain 6Eview chain
1 domainChain 6Iview chain
1 domainChain 72view chain
2 domainsChain 75view chain
1 domainChain 78view chain
1 domainChain 7Aview chain
1 domainChain 7Eview chain
2 domainsChain 7Iview chain
1 domainChain 82view chain
1 domainChain 85view chain
1 domainChain 88view chain
1 domainChain 8Aview chain
1 domainChain 8Eview chain
1 domainChain 8Iview chain
1 domainChain 95view chain
1 domainChain 98view chain
1 domainChain 9Aview chain
1 domainChain 9Iview chain
1 domainChain A5view chain
1 domainChain A8view chain
1 domainChain AAview chain
1 domainChain AIview chain
1 domainChain B5view chain
1 domainChain B8view chain
1 domainChain BAview chain
1 domainChain BIview chain
1 domainChain C5view chain
1 domainChain C8view chain
1 domainChain D5view chain
2 domainsChain D8view chain
1 domainChain E5view chain
1 domainChain E8view chain
1 domainChain F5view chain
1 domainChain F8view chain
1 domainChain G5view chain
1 domainChain G8view chain
1 domainChain H5view chain
1 domainChain H8view chain
2 domainsChain I5view chain
1 domainChain I8view chain
1 domainChain J5view chain
1 domainChain J8view chain
1 domainChain K8view chain
1 domainChain L5view chain
1 domainChain L8view chain
1 domainChain M5view chain
1 domainChain M8view chain
1 domainChain N8view chain
1 domainChain P8view chain
1 domainChain Q8view chain
1 domainAll Domains (106)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | 11 | e5ndj111 | 11:2-126 | Ribosomal_L2 | 2 → 2.1 → 2.1.1 |
| 2 | 11 | e5ndj112 | 11:127-274 | Ribosomal_L2_C | 4 → 4.1 → 4.1.1 |
| 3 | 12 | e5ndj121 | 12:4-240 | Ribosomal_S2 | 2007 → 2007.6 → 2007.6.1 |
| 4 | 15 | e5ndj151 | 15:1-138 | Ribosomal_L13 | 2490 → 2490.2 → 2490.2.1 |
| 5 | 19 | e5ndj191 | 19:127-274 | Ribosomal_L2_C | 4 → 4.1 → 4.1.1 |
| 6 | 19 | e5ndj192 | 19:2-126 | Ribosomal_L2 | 2 → 2.1 → 2.1.1 |
| 7 | 1A | e5ndj1A1 | 1A:3-101 | Ribosomal_S10 | 304 → 304.44 → 304.44.1 |
| 8 | 1E | e5ndj1E1 | 1E:4-240 | Ribosomal_S2 | 2007 → 2007.6 → 2007.6.1 |
| 9 | 1I | e5ndj1I1 | 1I:3-101 | Ribosomal_S10 | 304 → 304.44 → 304.44.1 |
| 10 | 21 | e5ndj211 | 21:1-205 | Ribosomal_L3 | 1 → 1.1 → 1.1.7 |
| 11 | 22 | e5ndj221 | 22:107-207 | Ribosomal_S3_C | 230 → 230.2 → 230.2.1 |
| 12 | 22 | e5ndj222 | 22:2-106 | KH_2 | 327 → 327.11 → 327.11.1 |
| 13 | 25 | e5ndj251 | 25:1-122 | Ribosomal_L14 | 3174 → 3174.1 → 3174.1.1 |
| 14 | 29 | e5ndj291 | 29:1-205 | Ribosomal_L3 | 1 → 1.1 → 1.1.7 |
| 15 | 2A | e5ndj2A1 | 2A:11-126 | Ribosomal_S11 | 2484 → 2484.1 → 2484.1.1 |
| 16 | 2E | e5ndj2E1 | 2E:2-105 | KH_2 | 327 → 327.11 → 327.11.1 |
| 17 | 2E | e5ndj2E2 | 2E:106-206 | Ribosomal_S3_C | 230 → 230.2 → 230.2.1 |
| 18 | 2I | e5ndj2I1 | 2I:11-126 | Ribosomal_S11 | 2484 → 2484.1 → 2484.1.1 |
| 19 | 31 | e5ndj311 | 31:6-207 | Ribosomal_L4 | 7559 → 7559.1 → 7559.1.1 |
| 20 | 32 | e5ndj321 | 32:2-209 | Ribosomal_S4,S4 | 221 → 221.1 → 221.1.2 |
| 21 | 35 | e5ndj351 | 35:1-150 | Ribosomal_L27A, PF29471 | 2490 → 2490.3 → 2490.3.1 |
| 22 | 39 | e5ndj391 | 39:1-208 | Ribosomal_L4 | 7559 → 7559.1 → 7559.1.1 |
| 23 | 3A | e5ndj3A1 | 3A:5-129 | Ribosom_S12_S23 | 2 → 2.1 → 2.1.1 |
| 24 | 3E | e5ndj3E1 | 3E:2-209 | Ribosomal_S4,S4 | 221 → 221.1 → 221.1.2 |
| 25 | 3I | e5ndj3I1 | 3I:5-126 | Ribosom_S12_S23 | 2 → 2.1 → 2.1.1 |
| 26 | 41 | e5ndj411 | 41:2-182 | Ribosomal_L5,Ribosomal_L5_C | 882 → 882.1 → 882.1.1 |
| 27 | 42 | e5ndj421 | 42:74-155 | Ribosomal_S5_C | 212 → 212.1 → 212.1.1 |
| 28 | 42 | e5ndj422 | 42:5-73 | Ribosomal_S5 | 330 → 330.1 → 330.1.1 |
| 29 | 45 | e5ndj451 | 45:2-141 | Ribosomal_L16 | 325 → 325.1 → 325.1.5 |
| 30 | 49 | e5ndj491 | 49:2-182 | Ribosomal_L5,Ribosomal_L5_C | 882 → 882.1 → 882.1.1 |
| 31 | 4A | e5ndj4A1 | 4A:2-117 | Ribosomal_S13 | 102 → 102.2 → 102.2.1 |
| 32 | 4E | e5ndj4E1 | 4E:5-73 | Ribosomal_S5 | 330 → 330.1 → 330.1.1 |
| 33 | 4E | e5ndj4E2 | 4E:74-155 | Ribosomal_S5_C | 212 → 212.1 → 212.1.1 |
| 34 | 4I | e5ndj4I1 | 4I:2-117 | Ribosomal_S13 | 102 → 102.2 → 102.2.1 |
| 35 | 51 | e5ndj511 | 51:83-175 | Ribosomal_L6 | 318 → 318.1 → 318.1.1 |
| 36 | 51 | e5ndj512 | 51:2-82 | Ribosomal_L6 | 318 → 318.1 → 318.1.1 |
| 37 | 52 | e5ndj521 | 52:1-101 | Ribosomal_S6 | 304 → 304.12 → 304.12.1 |
| 38 | 55 | e5ndj551 | 55:2-118 | Ribosomal_L17 | 218 → 218.3 → 218.3.1 |
| 39 | 58 | e5ndj581 | 58:1-138 | Ribosomal_L13 | 2490 → 2490.2 → 2490.2.1 |
| 40 | 59 | e5ndj591 | 59:2-82 | Ribosomal_L6 | 318 → 318.1 → 318.1.1 |
| 41 | 59 | e5ndj592 | 59:83-171 | Ribosomal_L6 | 318 → 318.1 → 318.1.1 |
| 42 | 5A | e5ndj5A1 | 5A:4-61 | Ribosomal_S14 | 377 → 377.1 → 377.1.1 |
| 43 | 5E | e5ndj5E1 | 5E:1-101 | Ribosomal_S6 | 304 → 304.12 → 304.12.1 |
| 44 | 5I | e5ndj5I1 | 5I:2-61 | Ribosomal_S14 | 377 → 377.1 → 377.1.1 |
| 45 | 61 | e5ndj611 | 61:54-146 | Ribosomal_L9_C | 523 → 523.1 → 523.1.1 |
| 46 | 61 | e5ndj612 | 61:1-53 | Ribosomal_L9_N | 4076 → 4076.1 → 4076.1.1 |
| 47 | 62 | e5ndj621 | 62:2-156 | Ribosomal_S7 | 167 → 167.1 → 167.1.1 |
| 48 | 65 | e5ndj651 | 65:2-112 | Ribosomal_L18p | 2484 → 2484.1 → 2484.1.1 |
| 49 | 68 | e5ndj681 | 68:1-122 | Ribosomal_L14 | 3174 → 3174.1 → 3174.1.1 |
| 50 | 69 | e5ndj691 | 69:1-55 | Ribosomal_L9_N | 4076 → 4076.1 → 4076.1.1 |
| 51 | 69 | e5ndj692 | 69:56-146 | Ribosomal_L9_C | 523 → 523.1 → 523.1.1 |
| 52 | 6A | e5ndj6A1 | 6A:2-89 | Ribosomal_S15 | 616 → 616.1 → 616.1.1 |
| 53 | 6E | e5ndj6E1 | 6E:2-153 | Ribosomal_S7 | 167 → 167.1 → 167.1.1 |
| 54 | 6I | e5ndj6I1 | 6I:2-89 | Ribosomal_S15 | 616 → 616.1 → 616.1.1 |
| 55 | 72 | e5ndj721 | 72:1-66 | Ribosomal_S8 | 320 → 320.2 → 320.2.1 |
| 56 | 72 | e5ndj722 | 72:67-138 | Ribosomal_S8 | 4988 → 4988.1 → 4988.1.1 |
| 57 | 75 | e5ndj751 | 75:1-137 | Ribosomal_L19 | 4 → 4.1 → 4.1.1 |
| 58 | 78 | e5ndj781 | 78:1-147 | Ribosomal_L27A, PF29471 | 2490 → 2490.3 → 2490.3.1 |
| 59 | 7A | e5ndj7A1 | 7A:1-84 | Ribosomal_S16 | 837 → 837.1 → 837.1.1 |
| 60 | 7E | e5ndj7E1 | 7E:67-138 | Ribosomal_S8 | 4988 → 4988.1 → 4988.1.1 |
| 61 | 7E | e5ndj7E2 | 7E:1-66 | Ribosomal_S8 | 320 → 320.2 → 320.2.1 |
| 62 | 7I | e5ndj7I1 | 7I:1-84 | Ribosomal_S16 | 837 → 837.1 → 837.1.1 |
| 63 | 82 | e5ndj821 | 82:2-125 | Ribosomal_S9 | 212 → 212.1 → 212.1.1 |
| 64 | 85 | e5ndj851 | 85:2-118 | Ribosomal_L20 | 143 → 143.2 → 143.2.1 |
| 65 | 88 | e5ndj881 | 88:1-141 | Ribosomal_L16 | 325 → 325.1 → 325.1.5 |
| 66 | 8A | e5ndj8A1 | 8A:2-100 | Ribosomal_S17 | 2 → 2.1 → 2.1.1 |
| 67 | 8E | e5ndj8E1 | 8E:2-128 | Ribosomal_S9 | 212 → 212.1 → 212.1.1 |
| 68 | 8I | e5ndj8I1 | 8I:2-101 | Ribosomal_S17 | 2 → 2.1 → 2.1.1 |
| 69 | 95 | e5ndj951 | 95:1-101 | Ribosomal_L21p | 4186 → 4186.1 → 4186.1.1 |
| 70 | 98 | e5ndj981 | 98:1-118 | Ribosomal_L17 | 218 → 218.3 → 218.3.1 |
| 71 | 9A | e5ndj9A1 | 9A:20-88 | Ribosomal_S18 | 101 → 101.1 → 101.1.1 |
| 72 | 9I | e5ndj9I1 | 9I:21-87 | Ribosomal_S18 | 101 → 101.1 → 101.1.1 |
| 73 | A5 | e5ndjA51 | A5:1-113 | Ribosomal_L22 | 218 → 218.2 → 218.2.1 |
| 74 | A8 | e5ndjA81 | A8:2-112 | Ribosomal_L18p | 2484 → 2484.1 → 2484.1.1 |
| 75 | AA | e5ndjAA1 | AA:7-84 | Ribosomal_S19 | 838 → 838.1 → 838.1.1 |
| 76 | AI | e5ndjAI1 | AI:4-83 | Ribosomal_S19 | 838 → 838.1 → 838.1.1 |
| 77 | B5 | e5ndjB51 | B5:3-94 | Ribosomal_L23 | 304 → 304.109 → 304.109.1 |
| 78 | B8 | e5ndjB81 | B8:1-129 | Ribosomal_L19 | 4 → 4.1 → 4.1.1 |
| 79 | BA | e5ndjBA1 | BA:8-106 | Ribosomal_S20p | 604 → 604.9 → 604.9.1 |
| 80 | BI | e5ndjBI1 | BI:8-106 | Ribosomal_S20p | 604 → 604.9 → 604.9.1 |
| 81 | C5 | e5ndjC51 | C5:2-105 | KOW,ribosomal_L24 | 4 → 4.1 → 4.1.1 |
| 82 | C8 | e5ndjC81 | C8:2-118 | Ribosomal_L20 | 143 → 143.2 → 143.2.1 |
| 83 | D5 | e5ndjD51 | D5:1-92 | Ribosomal_L25p | 239 → 239.1 → 239.1.1 |
| 84 | D5 | e5ndjD52 | D5:93-169 | Ribosomal_TL5_C | 240 → 240.1 → 240.1.1 |
| 85 | D8 | e5ndjD81 | D8:1-101 | Ribosomal_L21p | 4186 → 4186.1 → 4186.1.1 |
| 86 | E5 | e5ndjE51 | E5:2-85 | 325.1.8.0 | 325 → 325.1 → 325.1.8 |
| 87 | E8 | e5ndjE81 | E8:1-112 | Ribosomal_L22 | 218 → 218.2 → 218.2.1 |
| 88 | F5 | e5ndjF51 | F5:2-95 | Ribosomal_L28 | 4232 → 4232.1 → 4232.1.1 |
| 89 | F8 | e5ndjF81 | F8:1-94 | Ribosomal_L23 | 304 → 304.109 → 304.109.1 |
| 90 | G5 | e5ndjG51 | G5:4-70 | Ribosomal_L29 | 192 → 192.4 → 192.4.1 |
| 91 | G8 | e5ndjG81 | G8:3-105 | KOW,ribosomal_L24 | 4 → 4.1 → 4.1.1 |
| 92 | H5 | e5ndjH51 | H5:2-60 | Ribosomal_L30 | 887 → 887.1 → 887.1.1 |
| 93 | H8 | e5ndjH81 | H8:93-171 | Ribosomal_TL5_C | 240 → 240.1 → 240.1.1 |
| 94 | H8 | e5ndjH82 | H8:1-92 | Ribosomal_L25p | 239 → 239.1 → 239.1.1 |
| 95 | I5 | e5ndjI51 | I5:1-63 | Ribosomal_L31 | 4987 → 4987.1 → 4987.1.1 |
| 96 | I8 | e5ndjI81 | I8:2-84 | 325.1.8.0 | 325 → 325.1 → 325.1.8 |
| 97 | J5 | e5ndjJ51 | J5:2-57 | Ribosomal_L32p | 375 → 375.1 → 375.1.1 |
| 98 | J8 | e5ndjJ81 | J8:2-96 | Ribosomal_L28 | 4232 → 4232.1 → 4232.1.1 |
| 99 | K8 | e5ndjK81 | K8:2-69 | Ribosomal_L29 | 192 → 192.4 → 192.4.1 |
| 100 | L5 | e5ndjL51 | L5:1-47 | Ribosomal_L34 | 3074 → 3074.1 → 3074.1.1 |
| 101 | L8 | e5ndjL81 | L8:2-58 | Ribosomal_L30 | 887 → 887.1 → 887.1.1 |
| 102 | M5 | e5ndjM51 | M5:2-65 | Ribosomal_L35p | 4281 → 4281.1 → 4281.1.1 |
| 103 | M8 | e5ndjM81 | M8:1-66 | Ribosomal_L31 | 4987 → 4987.1 → 4987.1.1 |
| 104 | N8 | e5ndjN81 | N8:3-57 | Ribosomal_L32p | 375 → 375.1 → 375.1.1 |
| 105 | P8 | e5ndjP81 | P8:1-47 | Ribosomal_L34 | 3074 → 3074.1 → 3074.1.1 |
| 106 | Q8 | e5ndjQ81 | Q8:2-61 | Ribosomal_L35p | 4281 → 4281.1 → 4281.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors