Home/PDB

PDB 5WYK

ELECTRON MICROSCOPY0 chains71 ECOD domains
View in RCSB PDB

3D Structure(domains colored, ligands/nucleic acids shown)

Loading viewer...

Domains by Chain

All Domains (71)

#ChainDomain IDRangeFamilyClassification
13Be5wyk3B13B:84-322Fibrillarin2003 → 2003.1 → 2003.1.5
23Ce5wyk3C13C:84-322Fibrillarin2003 → 2003.1 → 2003.1.5
33De5wyk3D13D:288-329,3D:370-417Nop102 → 102.1 → 102.1.4
43De5wyk3D23D:168-298Nop606 → 606.1 → 606.1.1
53De5wyk3D33D:8-167NOP5NT3407 → 3407.1 → 3407.1.1
63Ee5wyk3E13E:285-403Nop102 → 102.1 → 102.1.4
73Ee5wyk3E23E:3-18,3E:38-154NOP5NT, Nop5_56-rel_N_Arc3407 → 3407.1 → 3407.1.1
83Ee5wyk3E33E:155-284Nop606 → 606.1 → 606.1.1
93Fe5wyk3F13F:130-361,3F:398-442,3F:474-570WD405 → 5.1 → 5.1.4
103Ge5wyk3G13G:5-126Ribosomal_L7Ae301 → 301.1 → 301.1.1
113He5wyk3H13H:5-126Ribosomal_L7Ae301 → 301.1 → 301.1.1
12AEe5wykAE1AE:3-421U3snoRNP10109 → 109.4 → 109.4.1
13B1e5wykB11B1:929-1016RIBIOP_C1 → 1.1 → 1.1.7
14B1e5wykB12B1:818-928RIBIOP_C1 → 1.1 → 1.1.8
15B1e5wykB13B1:33-214AAA, GTP_EFTU2004 → 2004.1 → 2004.1.1
16B1e5wykB14B1:215-284,B1:614-636,B1:787-817AARP2CN1 → 1.1 → 1.1.7
17BAe5wykBA2BA:343-620,BA:679-734WD40,ANAPC4_WD405 → 5.1 → 5.1.4
18BAe5wykBA3BA:735-852Utp12109 → 109.54 → 109.54.1
19BAe5wykBA4BA:1-222,BA:245-343WD40,ANAPC4_WD405 → 5.1 → 5.1.4
20BBe5wykBB2BB:747-773,BB:793-913Utp12109 → 109.54 → 109.54.1
21BBe5wykBB3BB:41-275,BB:321-386WD40, Beta-prop_WDR3_1st5 → 5.1 → 5.1.4
22BBe5wykBB4BB:11-40,BB:386-685WD40, Beta-prop_WDR3_2nd5 → 5.1 → 5.1.4
23BCe5wykBC1BC:332-649WD40, Beta-prop_WDR75_2nd5 → 5.1 → 5.1.4
24BCe5wykBC2BC:650-817Utp13109 → 109.54 → 109.54.1
25BCe5wykBC3BC:3-331WD405 → 5.1 → 5.1.4
26BDe5wykBD1BD:235-591WD405 → 5.1 → 5.1.4
27BEe5wykBE1BE:20-349ANAPC4_WD40, Beta-prop_WDR36-Utp21_1st5 → 5.1 → 5.1.4
28BEe5wykBE2BE:350-671,BE:793-805WD40, ANAPC4_WD40, Beta-prop_WDR36-Utp21_2nd5 → 5.1 → 5.1.4
29BEe5wykBE3BE:814-939Utp21109 → 109.54 → 109.54.1
30CAe5wykCA1CA:3-189RRM_Rrp7304 → 304.9 → 304.9.1
31CBe5wykCB1CB:81-356Nrap316 → 316.1 → 316.1.1
32CBe5wykCB2CB:1092-1237Nrap_D6304 → 304.20 → 304.20.1
33CBe5wykCB3CB:699-905Nrap_D4316 → 316.1 → 316.1.1
34CBe5wykCB4CB:515-698Nrap_D3304 → 304.20 → 304.20.1
35CBe5wykCB5CB:357-514Nrap_D2102 → 102.1 → 102.1.3
36CBe5wykCB6CB:906-983,CB:1010-1091Nrap_D5102 → 102.1 → 102.1.3
37E1e5wykE11E1:28-252EMG12488 → 2488.1 → 2488.1.1
38E2e5wykE21E2:28-252EMG12488 → 2488.1 → 2488.1.1
39K1e5wykK11K1:120-212KRR1-like_KH2327 → 327.11 → 327.11.2
40K1e5wykK12K1:38-119KH_8327 → 327.11 → 327.11.2
41MAe5wykMA1MA:29-161Ribosomal_S4,S4221 → 221.1 → 221.1.2
42MBe5wykMB1MB:84-267Brix7502 → 7502.1 → 7502.1.1
43P1e5wykP11P1:178-266KH_PNO1_2nd327 → 327.11 → 327.11.2
44P1e5wykP12P1:94-177KH_8327 → 327.11 → 327.11.2
45R1e5wykR11R1:183-287RTC_insert2485 → 2485.2 → 2485.2.1
46R1e5wykR12R1:7-182,R1:287-361RTC328 → 328.6 → 328.6.1
47Sce5wykSc1Sc:4-82Ribosomal_S27e375 → 375.1 → 375.1.1
48SCe5wykSC1SC:20-113Ribosomal_S3Ae239 → 239.5 → 239.5.1
49SCe5wykSC2SC:114-233Ribosomal_S3Ae230 → 230.6 → 230.6.1
50Sde5wykSd1Sd:5-67Ribosomal_S28e2 → 2.1 → 2.1.1
51Sfe5wykSf1Sf:23-52Ribosomal_S303168 → 3168.1 → 3168.1.1
52SFe5wykSF1SF:9-116Ribosomal_S4e,S4,RS4NT221 → 221.1 → 221.1.2
53SFe5wykSF2SF:117-175Ribosomal_S4e2 → 2.1 → 2.1.1
54SFe5wykSF3SF:176-245KOW,40S_S4_C4 → 4.1 → 4.1.1
55SGe5wykSG1SG:20-225Ribosomal_S7167 → 167.1 → 167.1.1
56SIe5wykSI1SI:118-187Ribosomal_S7e327 → 327.18 → 327.18.1
57SIe5wykSI2SI:4-98Ribosomal_S7e327 → 327.18 → 327.18.1
58SJe5wykSJ1SJ:2-123,SJ:153-200Ribosomal_S8e3174 → 3174.1 → 3174.1.1
59SKe5wykSK1SK:12-186Ribosomal_S4,S4221 → 221.1 → 221.1.2
60SMe5wykSM1SM:2-142Ribosomal_S17,Ribosomal_S17_N2 → 2.1 → 2.1.1
61SOe5wykSO1SO:9-82Ribosomal_S13_N101 → 101.40 → 101.40.1
62SOe5wykSO2SO:83-142Ribosomal_S15616 → 616.1 → 616.1.1
63SPe5wykSP1SP:11-122Ribosomal_S112484 → 2484.1 → 2484.1.1
64SRe5wykSR1SR:3-127Ribosomal_S9212 → 212.1 → 212.1.1
65SXe5wykSX1SX:68-130Ribosomal_S84988 → 4988.1 → 4988.1.1
66SXe5wykSX2SX:2-67Ribosomal_S8320 → 320.2 → 320.2.1
67SYe5wykSY1SY:43-145Ribosom_S12_S232 → 2.1 → 2.1.1
68SZe5wykSZ1SZ:2-102Ribosomal_S24e304 → 304.109 → 304.109.1
69U4e5wykU41U4:57-182Fcf12006 → 2006.1 → 2006.1.4
70U5e5wykU51U5:64-178Ribosomal_L12007 → 2007.25 → 2007.25.1
71U5e5wykU52U5:8-63,U5:179-255Ribosomal_L1898 → 898.1 → 898.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors