PDB 5WYK
ELECTRON MICROSCOPY0 chains71 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain 3Bview chain
1 domainChain 3Cview chain
1 domainChain 3Fview chain
1 domainChain 3Gview chain
1 domainChain 3Hview chain
1 domainChain AEview chain
1 domainChain B1view chain
4 domainsChain BAview chain
3 domainsChain BBview chain
3 domainsChain BCview chain
3 domainsChain BDview chain
1 domainChain CAview chain
1 domainChain CBview chain
6 domainsChain E1view chain
1 domainChain E2view chain
1 domainChain K1view chain
2 domainsChain MAview chain
1 domainChain MBview chain
1 domainChain P1view chain
2 domainsChain R1view chain
2 domainsChain Scview chain
1 domainChain SCview chain
2 domainsChain Sdview chain
1 domainChain Sfview chain
1 domainChain SFview chain
3 domainsChain SGview chain
1 domainChain SIview chain
2 domainsChain SJview chain
1 domainChain SKview chain
1 domainChain SMview chain
1 domainChain SOview chain
2 domainsChain SPview chain
1 domainChain SRview chain
1 domainChain SXview chain
2 domainsChain SYview chain
1 domainChain SZview chain
1 domainChain U4view chain
1 domainChain U5view chain
2 domainsAll Domains (71)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | 3B | e5wyk3B1 | 3B:84-322 | Fibrillarin | 2003 → 2003.1 → 2003.1.5 |
| 2 | 3C | e5wyk3C1 | 3C:84-322 | Fibrillarin | 2003 → 2003.1 → 2003.1.5 |
| 3 | 3D | e5wyk3D1 | 3D:288-329,3D:370-417 | Nop | 102 → 102.1 → 102.1.4 |
| 4 | 3D | e5wyk3D2 | 3D:168-298 | Nop | 606 → 606.1 → 606.1.1 |
| 5 | 3D | e5wyk3D3 | 3D:8-167 | NOP5NT | 3407 → 3407.1 → 3407.1.1 |
| 6 | 3E | e5wyk3E1 | 3E:285-403 | Nop | 102 → 102.1 → 102.1.4 |
| 7 | 3E | e5wyk3E2 | 3E:3-18,3E:38-154 | NOP5NT, Nop5_56-rel_N_Arc | 3407 → 3407.1 → 3407.1.1 |
| 8 | 3E | e5wyk3E3 | 3E:155-284 | Nop | 606 → 606.1 → 606.1.1 |
| 9 | 3F | e5wyk3F1 | 3F:130-361,3F:398-442,3F:474-570 | WD40 | 5 → 5.1 → 5.1.4 |
| 10 | 3G | e5wyk3G1 | 3G:5-126 | Ribosomal_L7Ae | 301 → 301.1 → 301.1.1 |
| 11 | 3H | e5wyk3H1 | 3H:5-126 | Ribosomal_L7Ae | 301 → 301.1 → 301.1.1 |
| 12 | AE | e5wykAE1 | AE:3-421 | U3snoRNP10 | 109 → 109.4 → 109.4.1 |
| 13 | B1 | e5wykB11 | B1:929-1016 | RIBIOP_C | 1 → 1.1 → 1.1.7 |
| 14 | B1 | e5wykB12 | B1:818-928 | RIBIOP_C | 1 → 1.1 → 1.1.8 |
| 15 | B1 | e5wykB13 | B1:33-214 | AAA, GTP_EFTU | 2004 → 2004.1 → 2004.1.1 |
| 16 | B1 | e5wykB14 | B1:215-284,B1:614-636,B1:787-817 | AARP2CN | 1 → 1.1 → 1.1.7 |
| 17 | BA | e5wykBA2 | BA:343-620,BA:679-734 | WD40,ANAPC4_WD40 | 5 → 5.1 → 5.1.4 |
| 18 | BA | e5wykBA3 | BA:735-852 | Utp12 | 109 → 109.54 → 109.54.1 |
| 19 | BA | e5wykBA4 | BA:1-222,BA:245-343 | WD40,ANAPC4_WD40 | 5 → 5.1 → 5.1.4 |
| 20 | BB | e5wykBB2 | BB:747-773,BB:793-913 | Utp12 | 109 → 109.54 → 109.54.1 |
| 21 | BB | e5wykBB3 | BB:41-275,BB:321-386 | WD40, Beta-prop_WDR3_1st | 5 → 5.1 → 5.1.4 |
| 22 | BB | e5wykBB4 | BB:11-40,BB:386-685 | WD40, Beta-prop_WDR3_2nd | 5 → 5.1 → 5.1.4 |
| 23 | BC | e5wykBC1 | BC:332-649 | WD40, Beta-prop_WDR75_2nd | 5 → 5.1 → 5.1.4 |
| 24 | BC | e5wykBC2 | BC:650-817 | Utp13 | 109 → 109.54 → 109.54.1 |
| 25 | BC | e5wykBC3 | BC:3-331 | WD40 | 5 → 5.1 → 5.1.4 |
| 26 | BD | e5wykBD1 | BD:235-591 | WD40 | 5 → 5.1 → 5.1.4 |
| 27 | BE | e5wykBE1 | BE:20-349 | ANAPC4_WD40, Beta-prop_WDR36-Utp21_1st | 5 → 5.1 → 5.1.4 |
| 28 | BE | e5wykBE2 | BE:350-671,BE:793-805 | WD40, ANAPC4_WD40, Beta-prop_WDR36-Utp21_2nd | 5 → 5.1 → 5.1.4 |
| 29 | BE | e5wykBE3 | BE:814-939 | Utp21 | 109 → 109.54 → 109.54.1 |
| 30 | CA | e5wykCA1 | CA:3-189 | RRM_Rrp7 | 304 → 304.9 → 304.9.1 |
| 31 | CB | e5wykCB1 | CB:81-356 | Nrap | 316 → 316.1 → 316.1.1 |
| 32 | CB | e5wykCB2 | CB:1092-1237 | Nrap_D6 | 304 → 304.20 → 304.20.1 |
| 33 | CB | e5wykCB3 | CB:699-905 | Nrap_D4 | 316 → 316.1 → 316.1.1 |
| 34 | CB | e5wykCB4 | CB:515-698 | Nrap_D3 | 304 → 304.20 → 304.20.1 |
| 35 | CB | e5wykCB5 | CB:357-514 | Nrap_D2 | 102 → 102.1 → 102.1.3 |
| 36 | CB | e5wykCB6 | CB:906-983,CB:1010-1091 | Nrap_D5 | 102 → 102.1 → 102.1.3 |
| 37 | E1 | e5wykE11 | E1:28-252 | EMG1 | 2488 → 2488.1 → 2488.1.1 |
| 38 | E2 | e5wykE21 | E2:28-252 | EMG1 | 2488 → 2488.1 → 2488.1.1 |
| 39 | K1 | e5wykK11 | K1:120-212 | KRR1-like_KH2 | 327 → 327.11 → 327.11.2 |
| 40 | K1 | e5wykK12 | K1:38-119 | KH_8 | 327 → 327.11 → 327.11.2 |
| 41 | MA | e5wykMA1 | MA:29-161 | Ribosomal_S4,S4 | 221 → 221.1 → 221.1.2 |
| 42 | MB | e5wykMB1 | MB:84-267 | Brix | 7502 → 7502.1 → 7502.1.1 |
| 43 | P1 | e5wykP11 | P1:178-266 | KH_PNO1_2nd | 327 → 327.11 → 327.11.2 |
| 44 | P1 | e5wykP12 | P1:94-177 | KH_8 | 327 → 327.11 → 327.11.2 |
| 45 | R1 | e5wykR11 | R1:183-287 | RTC_insert | 2485 → 2485.2 → 2485.2.1 |
| 46 | R1 | e5wykR12 | R1:7-182,R1:287-361 | RTC | 328 → 328.6 → 328.6.1 |
| 47 | Sc | e5wykSc1 | Sc:4-82 | Ribosomal_S27e | 375 → 375.1 → 375.1.1 |
| 48 | SC | e5wykSC1 | SC:20-113 | Ribosomal_S3Ae | 239 → 239.5 → 239.5.1 |
| 49 | SC | e5wykSC2 | SC:114-233 | Ribosomal_S3Ae | 230 → 230.6 → 230.6.1 |
| 50 | Sd | e5wykSd1 | Sd:5-67 | Ribosomal_S28e | 2 → 2.1 → 2.1.1 |
| 51 | Sf | e5wykSf1 | Sf:23-52 | Ribosomal_S30 | 3168 → 3168.1 → 3168.1.1 |
| 52 | SF | e5wykSF1 | SF:9-116 | Ribosomal_S4e,S4,RS4NT | 221 → 221.1 → 221.1.2 |
| 53 | SF | e5wykSF2 | SF:117-175 | Ribosomal_S4e | 2 → 2.1 → 2.1.1 |
| 54 | SF | e5wykSF3 | SF:176-245 | KOW,40S_S4_C | 4 → 4.1 → 4.1.1 |
| 55 | SG | e5wykSG1 | SG:20-225 | Ribosomal_S7 | 167 → 167.1 → 167.1.1 |
| 56 | SI | e5wykSI1 | SI:118-187 | Ribosomal_S7e | 327 → 327.18 → 327.18.1 |
| 57 | SI | e5wykSI2 | SI:4-98 | Ribosomal_S7e | 327 → 327.18 → 327.18.1 |
| 58 | SJ | e5wykSJ1 | SJ:2-123,SJ:153-200 | Ribosomal_S8e | 3174 → 3174.1 → 3174.1.1 |
| 59 | SK | e5wykSK1 | SK:12-186 | Ribosomal_S4,S4 | 221 → 221.1 → 221.1.2 |
| 60 | SM | e5wykSM1 | SM:2-142 | Ribosomal_S17,Ribosomal_S17_N | 2 → 2.1 → 2.1.1 |
| 61 | SO | e5wykSO1 | SO:9-82 | Ribosomal_S13_N | 101 → 101.40 → 101.40.1 |
| 62 | SO | e5wykSO2 | SO:83-142 | Ribosomal_S15 | 616 → 616.1 → 616.1.1 |
| 63 | SP | e5wykSP1 | SP:11-122 | Ribosomal_S11 | 2484 → 2484.1 → 2484.1.1 |
| 64 | SR | e5wykSR1 | SR:3-127 | Ribosomal_S9 | 212 → 212.1 → 212.1.1 |
| 65 | SX | e5wykSX1 | SX:68-130 | Ribosomal_S8 | 4988 → 4988.1 → 4988.1.1 |
| 66 | SX | e5wykSX2 | SX:2-67 | Ribosomal_S8 | 320 → 320.2 → 320.2.1 |
| 67 | SY | e5wykSY1 | SY:43-145 | Ribosom_S12_S23 | 2 → 2.1 → 2.1.1 |
| 68 | SZ | e5wykSZ1 | SZ:2-102 | Ribosomal_S24e | 304 → 304.109 → 304.109.1 |
| 69 | U4 | e5wykU41 | U4:57-182 | Fcf1 | 2006 → 2006.1 → 2006.1.4 |
| 70 | U5 | e5wykU51 | U5:64-178 | Ribosomal_L1 | 2007 → 2007.25 → 2007.25.1 |
| 71 | U5 | e5wykU52 | U5:8-63,U5:179-255 | Ribosomal_L1 | 898 → 898.1 → 898.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors