PDB 5XJC
ELECTRON MICROSCOPY0 chains74 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain aview chain
1 domainChain Aview chain
6 domainsChain bview chain
1 domainChain cview chain
1 domainChain Cview chain
5 domainsChain dview chain
1 domainChain Dview chain
12 domainsChain eview chain
1 domainChain Eview chain
1 domainChain fview chain
1 domainChain gview chain
1 domainChain hview chain
1 domainChain iview chain
1 domainChain Iview chain
1 domainChain jview chain
1 domainChain Jview chain
1 domainChain kview chain
1 domainChain lview chain
1 domainChain Lview chain
2 domainsChain mview chain
1 domainChain nview chain
1 domainChain Nview chain
1 domainChain oview chain
1 domainChain Oview chain
3 domainsChain pview chain
1 domainChain qview chain
1 domainChain Qview chain
5 domainsChain rview chain
1 domainChain sview chain
1 domainChain Sview chain
1 domainChain tview chain
1 domainChain Tview chain
1 domainChain uview chain
2 domainsChain vview chain
1 domainChain Vview chain
2 domainsChain wview chain
1 domainChain Wview chain
1 domainChain Yview chain
6 domainsChain Zview chain
2 domainsAll Domains (74)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | a | e5xjca1 | a:3-85 | LSM | 4 → 4.1 → 4.1.1 |
| 2 | A | e5xjcA1 | A:2067-2314 | JAB,PROCT | 2492 → 2492.1 → 2492.1.1 |
| 3 | A | e5xjcA2 | A:25-810 | PRO8NT,PROCN | 1038 → 1038.1 → 1038.1.1 |
| 4 | A | e5xjcA3 | A:1755-2015 | PRP8_domainIV | 2484 → 2484.1 → 2484.1.1 |
| 5 | A | e5xjcA4 | A:1183-1502 | U6-snRNA_bdg,U5_2-snRNA_bdg | 4967 → 4967.1 → 4967.1.1 |
| 6 | A | e5xjcA5 | A:811-1182 | RRM_4 | 304 → 304.48 → 304.48.1 |
| 7 | A | e5xjcA6 | A:1503-1754 | U6-snRNA_bdg | 2008 → 2008.1 → 2008.1.1 |
| 8 | b | e5xjcb1 | b:4-89 | LSM | 4 → 4.1 → 4.1.1 |
| 9 | c | e5xjcc1 | c:1-82 | LSM | 4 → 4.1 → 4.1.1 |
| 10 | C | e5xjcC1 | C:660-828 | EFG_IV | 212 → 212.1 → 212.1.1 |
| 11 | C | e5xjcC2 | C:829-943 | EFG_C | 304 → 304.24 → 304.24.1 |
| 12 | C | e5xjcC3 | C:56-439 | GTP_EFTU,EFTUD2 | 2004 → 2004.1 → 2004.1.1 |
| 13 | C | e5xjcC4 | C:440-580 | GTP_EFTU_D2 | 1 → 1.1 → 1.1.7 |
| 14 | C | e5xjcC5 | C:581-659 | EFG_III | 304 → 304.24 → 304.24.1 |
| 15 | d | e5xjcd1 | d:20-116 | LSM | 4 → 4.1 → 4.1.1 |
| 16 | D | e5xjcD1 | D:1312-1520 | DEAD | 2004 → 2004.1 → 2004.1.1 |
| 17 | D | e5xjcD2 | D:1958-2015 | 102.5.1.0 | 102 → 102.5 → 102.5.1 |
| 18 | D | e5xjcD3 | D:1181-1311 | Sec63 | 11 → 11.1 → 11.1.1 |
| 19 | D | e5xjcD4 | D:1825-1957 | Sec63 | 4156 → 4156.1 → 4156.1.1 |
| 20 | D | e5xjcD5 | D:1126-1180 | 102.5.1.0 | 102 → 102.5 → 102.5.1 |
| 21 | D | e5xjcD6 | D:1521-1722 | Helicase_C | 2004 → 2004.1 → 2004.1.1 |
| 22 | D | e5xjcD7 | D:994-1125 | Sec63 | 4156 → 4156.1 → 4156.1.1 |
| 23 | D | e5xjcD8 | D:2016-2125 | Sec63 | 11 → 11.1 → 11.1.1 |
| 24 | D | e5xjcD9 | D:1723-1824 | SNRNP200_wHTH | 101 → 101.1 → 101.1.2 |
| 25 | D | e5xjcD10 | D:887-993 | SNRNP200_wHTH | 101 → 101.1 → 101.1.2 |
| 26 | D | e5xjcD11 | D:683-886 | Helicase_C | 2004 → 2004.1 → 2004.1.1 |
| 27 | D | e5xjcD12 | D:404-682 | DEAD | 2004 → 2004.1 → 2004.1.1 |
| 28 | e | e5xjce1 | e:14-92 | LSM | 4 → 4.1 → 4.1.1 |
| 29 | E | e5xjcE1 | E:58-356 | WD40, Beta-prop_NOL10_N | 5 → 5.1 → 5.1.4 |
| 30 | f | e5xjcf1 | f:2-75 | LSM | 4 → 4.1 → 4.1.1 |
| 31 | g | e5xjcg1 | g:3-76 | LSM | 4 → 4.1 → 4.1.1 |
| 32 | h | e5xjch1 | h:3-85 | LSM | 4 → 4.1 → 4.1.1 |
| 33 | i | e5xjci1 | i:4-89 | LSM | 4 → 4.1 → 4.1.1 |
| 34 | I | e5xjcI1 | I:156-738,I:740-819 | TPR_8, HAT_Syf1_M, HAT_Syf1_CNRKL1_C | 109 → 109.4 → 109.4.1 |
| 35 | j | e5xjcj1 | j:1-82 | LSM | 4 → 4.1 → 4.1.1 |
| 36 | J | e5xjcJ1 | J:214-802 | HAT, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_C, PF29376 | 109 → 109.4 → 109.4.1 |
| 37 | k | e5xjck1 | k:20-116 | LSM | 4 → 4.1 → 4.1.1 |
| 38 | l | e5xjcl1 | l:14-92 | LSM | 4 → 4.1 → 4.1.1 |
| 39 | L | e5xjcL1 | L:8-64 | Myb_DNA-binding | 101 → 101.1 → 101.1.1 |
| 40 | L | e5xjcL2 | L:62-110 | Myb_DNA-binding | 101 → 101.1 → 101.1.1 |
| 41 | m | e5xjcm1 | m:2-75 | LSM | 4 → 4.1 → 4.1.1 |
| 42 | n | e5xjcn1 | n:3-76 | LSM | 4 → 4.1 → 4.1.1 |
| 43 | N | e5xjcN1 | N:1-143 | BUD31 | 3952 → 3952.1 → 3952.1.1 |
| 44 | o | e5xjco1 | o:2-163 | LRR_9 | 207 → 207.1 → 207.1.1 |
| 45 | O | e5xjcO1 | O:221-303 | RRM_1 | 304 → 304.9 → 304.9.1 |
| 46 | O | e5xjcO2 | O:19-89 | STL11_N | 376 → 376.1 → 376.1.3 |
| 47 | O | e5xjcO3 | O:90-220 | zf-CCCH_RBM22 | 906 → 906.1 → 906.1.1 |
| 48 | p | e5xjcp1 | p:3-96 | RRM_1 | 304 → 304.9 → 304.9.1 |
| 49 | q | e5xjcq1 | q:68-134,q:195-504 | WD40, Prp19, WD40_Prp19 | 5 → 5.1 → 5.1.4 |
| 50 | Q | e5xjcQ1 | Q:493-659 | Aquarius_N_2nd | 1 → 1.1 → 1.1.7 |
| 51 | Q | e5xjcQ2 | Q:416-492,Q:660-706,Q:795-1134 | ResIII, AAA_11 | 2004 → 2004.1 → 2004.1.1 |
| 52 | Q | e5xjcQ3 | Q:19-415 | Aquarius_N_1st | 109 → 109.4 → 109.4.1 |
| 53 | Q | e5xjcQ4 | Q:707-753,Q:773-794 | Aquarius_N_3rd | 3940 → 3940.1 → 3940.1.1 |
| 54 | Q | e5xjcQ5 | Q:1135-1381 | AAA_12 | 2004 → 2004.1 → 2004.1.1 |
| 55 | r | e5xjcr1 | r:68-134,r:195-504 | WD40, Prp19, WD40_Prp19 | 5 → 5.1 → 5.1.4 |
| 56 | s | e5xjcs1 | s:68-134,s:195-504 | WD40, Prp19, WD40_Prp19 | 5 → 5.1 → 5.1.4 |
| 57 | S | e5xjcS1 | S:8-166 | Pro_isomerase | 75 → 75.1 → 75.1.1 |
| 58 | t | e5xjct1 | t:68-134,t:195-504 | WD40, Prp19, WD40_Prp19 | 5 → 5.1 → 5.1.4 |
| 59 | T | e5xjcT1 | T:184-496 | WD40 | 5 → 5.1 → 5.1.4 |
| 60 | u | e5xjcu1 | u:243-411 | Helicase_C | 2004 → 2004.1 → 2004.1.1 |
| 61 | u | e5xjcu2 | u:22-242 | DEAD | 2004 → 2004.1 → 2004.1.1 |
| 62 | v | e5xjcv1 | v:5-148 | Mago_nashi | 861 → 861.1 → 861.1.1 |
| 63 | V | e5xjcV1 | V:448-648 | MA3 | 109 → 109.4 → 109.4.1 |
| 64 | V | e5xjcV2 | V:149-406 | MIF4G | 109 → 109.4 → 109.4.1 |
| 65 | w | e5xjcw1 | w:64-154 | RRM_1 | 304 → 304.9 → 304.9.1 |
| 66 | W | e5xjcW1 | W:83-578 | WD40 | 5 → 5.1 → 5.1.4 |
| 67 | Y | e5xjcY01 | Y:260-355,Y:609-610,Y:800-805 | S1 | 2 → 2.1 → 2.1.1 |
| 68 | Y | e5xjcY02 | Y:566-608,Y:611-743 | DEAD | 2004 → 2004.1 → 2004.1.1 |
| 69 | Y | e5xjcY03 | Y:744-799,Y:806-911,Y:914-917 | Helicase_C | 2004 → 2004.1 → 2004.1.1 |
| 70 | Y | e5xjcY04 | Y:912-913,Y:918-975,Y:977-987 | HA2_N | 101 → 101.1 → 101.1.2 |
| 71 | Y | e5xjcY05 | Y:961-1108 | HA2_N,HA2_C | 4156 → 4156.1 → 4156.1.1 |
| 72 | Y | e5xjcY06 | Y:1109-1183 | OB_NTP_bind | 2 → 2.1 → 2.1.1 |
| 73 | Z | e5xjcZ1 | Z:62-196 | PF30379 | 396 → 396.3 → 396.3.1 |
| 74 | Z | e5xjcZ2 | Z:265-371 | Slu7 | 7101 → 7101.1 → 7101.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors