PDB 5XOG
X-RAY DIFFRACTION3.00 Å0 chains32 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Aview chain
9 domainsChain Bview chain
7 domainsChain Cview chain
2 domainsChain Dview chain
1 domainChain Eview chain
2 domainsChain Fview chain
1 domainChain Gview chain
2 domainsChain Hview chain
1 domainChain Iview chain
2 domainsChain Jview chain
1 domainChain Kview chain
1 domainChain Lview chain
1 domainChain Mview chain
1 domainChain Wview chain
1 domainAll Domains (32)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e5xogA1 | A:873-1061 | RNA_pol_Rpb1_6 | 4957 → 4957.1 → 4957.1.1 |
| 2 | A | e5xogA2 | A:1062-1104,A:1304-1463 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 3 | A | e5xogA3 | A:376-436 | RNA_pol_Rpb1_2 | 275 → 275.1 → 275.1.1 |
| 4 | A | e5xogA4 | A:1105-1133,A:1245-1303 | 4956.1.1.0 | 4956 → 4956.1 → 4956.1.1 |
| 5 | A | e5xogA5 | A:2-337 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 6 | A | e5xogA6 | A:1134-1244 | RNA_pol_Rpb1_7 | 4955 → 4955.1 → 4955.1.1 |
| 7 | A | e5xogA7 | A:338-375,A:437-520 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 8 | A | e5xogA8 | A:664-872 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 9 | A | e5xogA9 | A:521-663 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 10 | B | e5xogB1 | B:9-57,B:77-121,B:155-209,B:398-534 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 11 | B | e5xogB2 | B:851-974 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 12 | B | e5xogB3 | B:535-623 | RNA_pol_Rpb2_4 | 4961 → 4961.1 → 4961.1.1 |
| 13 | B | e5xogB4 | B:814-850,B:975-1097 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 14 | B | e5xogB5 | B:624-655,B:675-813 | 4042.1.1.0 | 4042 → 4042.1 → 4042.1.1 |
| 15 | B | e5xogB6 | B:210-397 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 16 | B | e5xogB7 | B:1098-1222 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 17 | C | e5xogC1 | C:41-172 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 18 | C | e5xogC2 | C:4-40,C:173-266 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 19 | D | e5xogD1 | D:3-185 | RNA_pol_Rpb4 | 102 → 102.1 → 102.1.1 |
| 20 | E | e5xogE1 | E:143-214 | RNA_pol_Rpb5_C | 840 → 840.1 → 840.1.1 |
| 21 | E | e5xogE2 | E:2-142 | RNA_pol_Rpb5_N | 2008 → 2008.3 → 2008.3.1 |
| 22 | F | e5xogF1 | F:71-154 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.1 |
| 23 | G | e5xogG1 | G:69-171 | S1 | 2 → 2.1 → 2.1.1 |
| 24 | G | e5xogG2 | G:1-68 | SHS2_Rpb7-N | 872 → 872.1 → 872.1.1 |
| 25 | H | e5xogH1 | H:3-145 | RNA_pol_Rpb8 | 2 → 2.1 → 2.1.1 |
| 26 | I | e5xogI1 | I:3-49 | RNA_POL_M_15KD | 375 → 375.1 → 375.1.1 |
| 27 | I | e5xogI2 | I:50-113 | TFIIS_C | 375 → 375.1 → 375.1.1 |
| 28 | J | e5xogJ1 | J:1-66 | RNA_pol_N | 101 → 101.4 → 101.4.1 |
| 29 | K | e5xogK1 | K:1-113 | RNA_pol_L_2 | 305 → 305.1 → 305.1.1 |
| 30 | L | e5xogL1 | L:28-72 | DNA_RNApol_7kD | 375 → 375.1 → 375.1.1 |
| 31 | M | e5xogM1 | M:15-78 | Elf1 | 375 → 375.1 → 375.1.1 |
| 32 | W | e5xogW1 | W:749-809 | KOW5_SPT5 | 4 → 4.1 → 4.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors