ECODEvolutionary Classification of Protein Domains

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PDB 6G88

X-RAY DIFFRACTION3.30 Å0 chains15 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain Aview chain

5 domains

e6g88A1(A:161-189,A:261-346)e6g88A2(A:418-544)e6g88A3(A:190-260)e6g88A4(A:347-418,A:545-679)e6g88A5(A:38-160)

Chain Bview chain

5 domains

e6g88B1(B:38-160)e6g88B2(B:190-193,B:237-260)e6g88B3(B:161-189,B:261-346)e6g88B4(B:347-418,B:545-679)e6g88B5(B:418-544)

Chain Cview chain

5 domains

e6g88C1(C:418-544)e6g88C2(C:346-418,C:545-679)e6g88C3(C:161-189,C:261-345)e6g88C4(C:39-160)e6g88C5(C:190-196,C:222-260)

All Domains (15)

#	Chain	Domain ID	Range	Family	Classification
1	A	e6g88A1	A:161-189,A:261-346	PBP_dimer	3702 → 3702.1 → 3702.1.1
2	A	e6g88A2	A:418-544	Transpeptidase	4019 → 4019.1 → 4019.1.1
3	A	e6g88A3	A:190-260	308.2.1.0	308 → 308.2 → 308.2.1
4	A	e6g88A4	A:347-418,A:545-679	Transpeptidase	223 → 223.3 → 223.3.1
5	A	e6g88A5	A:38-160	MecA_N	243 → 243.1 → 243.1.1
6	B	e6g88B1	B:38-160	MecA_N	243 → 243.1 → 243.1.1
7	B	e6g88B2	B:190-193,B:237-260	308.2.1.0	308 → 308.2 → 308.2.1
8	B	e6g88B3	B:161-189,B:261-346	PBP_dimer	3702 → 3702.1 → 3702.1.1
9	B	e6g88B4	B:347-418,B:545-679	Transpeptidase	223 → 223.3 → 223.3.1
10	B	e6g88B5	B:418-544	Transpeptidase	4019 → 4019.1 → 4019.1.1
11	C	e6g88C1	C:418-544	Transpeptidase	4019 → 4019.1 → 4019.1.1
12	C	e6g88C2	C:346-418,C:545-679	Transpeptidase	223 → 223.3 → 223.3.1
13	C	e6g88C3	C:161-189,C:261-345	PBP_dimer	3702 → 3702.1 → 3702.1.1
14	C	e6g88C4	C:39-160	MecA_N	243 → 243.1 → 243.1.1
15	C	e6g88C5	C:190-196,C:222-260	308.2.1.0	308 → 308.2 → 308.2.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors