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PDB 6RXY

ELECTRON MICROSCOPY0 chains82 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

All Domains (82)

#ChainDomain IDRangeFamilyClassification
1CAe6rxyCA1CA:64-313Fibrillarin2003 → 2003.1 → 2003.1.5
2CBe6rxyCB1CB:72-308Fibrillarin2003 → 2003.1 → 2003.1.5
3Cce6rxyCc1Cc:13-212Ribosomal_S7167 → 167.1 → 167.1.1
4CCe6rxyCC1CC:291-331,CC:372-421Nop102 → 102.1 → 102.1.4
5CCe6rxyCC2CC:3-170NOP5NT3407 → 3407.1 → 3407.1.1
6CCe6rxyCC3CC:171-301Nop606 → 606.1 → 606.1.1
7CDe6rxyCD1CD:1-177NOP5NT3407 → 3407.1 → 3407.1.1
8CDe6rxyCD2CD:178-307Nop102 → 102.1 → 102.1.4
9CDe6rxyCD3CD:308-410Nop102 → 102.1 → 102.1.4
10Cee6rxyCe1Ce:15-103Ribosomal_S7e327 → 327.18 → 327.18.1
11Cee6rxyCe2Ce:128-197Ribosomal_S7e327 → 327.18 → 327.18.1
12CEe6rxyCE1CE:6-126Ribosomal_L7Ae301 → 301.1 → 301.1.1
13CFe6rxyCF1CF:7-126Ribosomal_L7Ae301 → 301.1 → 301.1.1
14Cge6rxyCg1Cg:18-176Ribosomal_S4,S4221 → 221.1 → 221.1.2
15CGe6rxyCG1CG:147-201,CG:234-439,CG:460-504,CG:555-608WD405 → 5.1 → 5.1.4
16Che6rxyCh1Ch:86-134Ribosomal_S15616 → 616.1 → 616.1.1
17CHe6rxyCH1CH:209-325RTC_insert2485 → 2485.2 → 2485.2.1
18CHe6rxyCH2CH:7-208,CH:325-411RTC328 → 328.6 → 328.6.1
19Cie6rxyCi1Ci:25-139Ribosomal_S112484 → 2484.1 → 2484.1.1
20CIe6rxyCI1CI:54-236MMR_HSR12004 → 2004.1 → 2004.1.1
21CIe6rxyCI2CI:237-303,CI:772-805AARP2CN1 → 1.1 → 1.1.7
22CIe6rxyCI3CI:806-917RIBIOP_C1 → 1.1 → 1.1.7
23CIe6rxyCI4CI:918-956RIBIOP_C1 → 1.1 → 1.1.7
24CIe6rxyCI5CI:957-992RIBIOP_C1 → 1.1 → 1.1.8
25Cje6rxyCj1Cj:3-128Ribosomal_S9212 → 212.1 → 212.1.1
26CJe6rxyCJ1CJ:2-180Ribosomal_S4,S4221 → 221.1 → 221.1.2
27CKe6rxyCK1CK:83-274Brix7502 → 7502.1 → 7502.1.1
28Cle6rxyCl1Cl:2-81Ribosomal_S13102 → 102.2 → 102.2.1
29Cme6rxyCm1Cm:2-67Ribosomal_S8320 → 320.2 → 320.2.1
30Cme6rxyCm2Cm:68-130Ribosomal_S84988 → 4988.1 → 4988.1.1
31CMe6rxyCM1CM:81-315WD405 → 5.1 → 5.1.5
32CMe6rxyCM2CM:316-3575.1.4.05 → 5.1 → 5.1.4
33Cne6rxyCn1Cn:43-144Ribosom_S12_S232 → 2.1 → 2.1.1
34CNe6rxyCN1CN:12-251EMG12488 → 2488.1 → 2488.1.1
35COe6rxyCO1CO:24-252EMG12488 → 2488.1 → 2488.1.1
36Cpe6rxyCp1Cp:6-66Ribosomal_S28e2 → 2.1 → 2.1.1
37CPe6rxyCP1CP:118-222KRR1-like_KH2327 → 327.11 → 327.11.2
38CPe6rxyCP2CP:36-117KH_8327 → 327.11 → 327.11.2
39CQe6rxyCQ1CQ:162-259KH_PNO1_2nd327 → 327.11 → 327.11.2
40CQe6rxyCQ2CQ:80-161327.11.2.0327 → 327.11 → 327.11.2
41CRe6rxyCR1CR:503-663,CR:703-804GNAT_acetyltr_2213 → 213.1 → 213.1.1
42CRe6rxyCR2CR:2-211TmcA_N2004 → 2004.1 → 2004.1.1
43CRe6rxyCR3CR:212-223,CR:249-326,CR:365-434,CR:469-502Helicase_RecD2004 → 2004.1 → 2004.1.1
44CRe6rxyCR4CR:805-924tRNA_bind_2101 → 101.1 → 101.1.1
45CSe6rxyCS1CS:503-663,CS:703-804GNAT_acetyltr_2213 → 213.1 → 213.1.1
46CSe6rxyCS2CS:2-211TmcA_N2004 → 2004.1 → 2004.1.1
47CSe6rxyCS3CS:212-223,CS:249-326,CS:365-434,CS:469-502Helicase_RecD2004 → 2004.1 → 2004.1.1
48CSe6rxyCS4CS:805-924tRNA_bind_2101 → 101.1 → 101.1.1
49CVe6rxyCV1CV:30-103,CV:145-218RRM_Rrp7304 → 304.9 → 304.9.1
50CXe6rxyCX1CX:193-459Bystin109 → 109.4 → 109.4.1
51Cze6rxyCz1Cz:1494-1768TPR_8, TPR_16, HAT_Syf1_CNRKL1_N, HAT_PRP39_N109 → 109.4 → 109.4.1
52UAe6rxyUA1UA:730-847Utp12109 → 109.54 → 109.54.1
53UAe6rxyUA2UA:1-338WD405 → 5.1 → 5.1.4
54UAe6rxyUA3UA:338-729WD405 → 5.1 → 5.1.4
55UDe6rxyUD1UD:368-578,UD:610-775,UD:797-8845.1.4.05 → 5.1 → 5.1.4
56UDe6rxyUD2UD:1-367WD405 → 5.1 → 5.1.4
57UEe6rxyUE1UE:153-280Utp12109 → 109.54 → 109.54.1
58UFe6rxyUF1UF:2-196,UF:272-409U3_assoc_6, HAT_Syf1_CNRKL1_N109 → 109.4 → 109.4.1
59UGe6rxyUG1UG:153-464WD40,BING4CT5 → 5.1 → 5.1.5
60UIe6rxyUI1UI:153-280Utp12109 → 109.54 → 109.54.1
61UJe6rxyUJ1UJ:3-458U3snoRNP10109 → 109.4 → 109.4.1
62UJe6rxyUJ2UJ:486-872109.4.1.0109 → 109.4 → 109.4.1
63ULe6rxyUL1UL:421-724WD40, Beta-prop_WDR3_2nd5 → 5.1 → 5.1.4
64ULe6rxyUL2UL:777-932Utp12109 → 109.54 → 109.54.1
65ULe6rxyUL3UL:5-161,UL:187-308,UL:352-420WD40, Beta-prop_WDR3_1st5 → 5.1 → 5.1.4
66UMe6rxyUM1UM:723-894Utp13109 → 109.54 → 109.54.1
67UMe6rxyUM2UM:11-31,UM:384-412,UM:435-488,UM:508-525,UM:545-722WD405 → 5.1 → 5.1.4
68UMe6rxyUM3UM:32-165,UM:195-284,UM:286-383WD405 → 5.1 → 5.1.4
69UOe6rxyUO1UO:42-350WD405 → 5.1 → 5.1.5
70UQe6rxyUQ1UQ:347-433,UQ:528-819WD40, Beta-prop_WDR75_1st5 → 5.1 → 5.1.5
71UUe6rxyUU1UU:31-385Beta-prop_WDR36-Utp21_1st5 → 5.1 → 5.1.4
72UUe6rxyUU2UU:386-582,UU:614-793,UU:840-843WD40, ANAPC4_WD40, Beta-prop_WDR36-Utp21_2nd5 → 5.1 → 5.1.4
73UUe6rxyUU3UU:844-867,UU:923-1049Utp21109 → 109.54 → 109.54.1
74UVe6rxyUV1UV:987-1111Nrap_D6304 → 304.20 → 304.20.1
75UVe6rxyUV2UV:824-986Nrap_D5102 → 102.1 → 102.1.3
76UVe6rxyUV3UV:34-293Nrap316 → 316.1 → 316.1.1
77UVe6rxyUV4UV:439-618Nrap_D3304 → 304.20 → 304.20.1
78UVe6rxyUV5UV:619-823Nrap_D4316 → 316.1 → 316.1.1
79UVe6rxyUV6UV:294-438Nrap_D2102 → 102.1 → 102.1.3
80UXe6rxyUX1UX:100-178Fcf12006 → 2006.1 → 2006.1.4
81UZe6rxyUZ2UZ:18-36,UZ:58-88,UZ:232-295Ribosomal_L1898 → 898.1 → 898.1.1
82UZe6rxyUZ3UZ:89-186Ribosomal_L12007 → 2007.25 → 2007.25.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors