PDB 6TED
ELECTRON MICROSCOPY0 chains54 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Aview chain
10 domainse6tedA01(A:1-345,A:569-570,A:618,A:668-672)e6tedA02(A:346-389,A:451-536)e6tedA03(A:390-450)e6tedA04(A:537-568,A:571-617,A:619-667,A:673-686)e6tedA05(A:687-895,A:897-898)e6tedA06(A:896,A:899-927)e6tedA07(A:1056-1088)e6tedA08(A:1089-1138,A:1172-1181,A:1194-1213,A:1242-1247,A:1261-1272,A:1282-1284,A:1308-1320,A:1328-1332,A:1367-1475)e6tedA09(A:1139-1170,A:1306-1307,A:1321-1327,A:1333-1366)e6tedA10(A:1171,A:1182-1193,A:1214-1241,A:1248-1260,A:1273-1281,A:1285-1305)
Chain Bview chain
7 domainsChain Cview chain
2 domainsChain Dview chain
1 domainChain Eview chain
2 domainsChain Fview chain
1 domainChain Gview chain
2 domainsChain Hview chain
1 domainChain Iview chain
2 domainsChain Jview chain
1 domainChain Kview chain
1 domainChain Lview chain
1 domainChain Mview chain
9 domainsChain Qview chain
3 domainsChain Wview chain
1 domainChain Xview chain
2 domainsChain Yview chain
1 domainAll Domains (54)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e6tedA01 | A:1-345,A:569-570,A:618,A:668-672 | RNA_pol_Rpb1_1 | 4246 → 4246.1 → 4246.1.1 |
| 2 | A | e6tedA02 | A:346-389,A:451-536 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 3 | A | e6tedA03 | A:390-450 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 4 | A | e6tedA04 | A:537-568,A:571-617,A:619-667,A:673-686 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 5 | A | e6tedA05 | A:687-895,A:897-898 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 6 | A | e6tedA06 | A:896,A:899-927 | RNA_pol_Rpb1_6 | 4957 → 4957.1 → 4957.1.1 |
| 7 | A | e6tedA07 | A:1056-1088 | RNA_pol_Rpb1_6 | 4957 → 4957.1 → 4957.1.1 |
| 8 | A | e6tedA08 | A:1089-1138,A:1172-1181,A:1194-1213,A:1242-1247,A:1261-1272,A:1282-1284,A:1308-1320,A:1328-1332,A:1367-1475 | RNA_pol_Rpb1_5 | 275 → 275.1 → 275.1.1 |
| 9 | A | e6tedA09 | A:1139-1170,A:1306-1307,A:1321-1327,A:1333-1366 | 4956.1.1.0 | 4956 → 4956.1 → 4956.1.1 |
| 10 | A | e6tedA10 | A:1171,A:1182-1193,A:1214-1241,A:1248-1260,A:1273-1281,A:1285-1305 | RNA_pol_Rpb1_7 | 4955 → 4955.1 → 4955.1.1 |
| 11 | B | e6tedB1 | B:619-768 | 4042.1.1.0 | 4042 → 4042.1 → 4042.1.1 |
| 12 | B | e6tedB2 | B:529-618 | RNA_pol_Rpb2_4 | 4961 → 4961.1 → 4961.1.1 |
| 13 | B | e6tedB3 | B:806-929 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 14 | B | e6tedB4 | B:1054-1174 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 15 | B | e6tedB5 | B:201-391 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 16 | B | e6tedB6 | B:769-805,B:930-1053 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 17 | B | e6tedB7 | B:16-67,B:87-200,B:392-528 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 18 | C | e6tedC1 | C:2-42,C:179-270 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 19 | C | e6tedC2 | C:43-178 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 20 | D | e6tedD1 | D:14-139 | RNA_pol_Rpb4 | 102 → 102.1 → 102.1.1 |
| 21 | E | e6tedE1 | E:139-210 | RNA_pol_Rpb5_C | 840 → 840.1 → 840.1.1 |
| 22 | E | e6tedE2 | E:2-138 | RNA_pol_Rpb5_N | 2008 → 2008.3 → 2008.3.1 |
| 23 | F | e6tedF1 | F:50-127 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.1 |
| 24 | G | e6tedG1 | G:78-171 | S1 | 2 → 2.1 → 2.1.1 |
| 25 | G | e6tedG2 | G:1-77 | SHS2_Rpb7-N | 872 → 872.1 → 872.1.1 |
| 26 | H | e6tedH1 | H:2-150 | RNA_pol_Rpb8 | 2 → 2.1 → 2.1.1 |
| 27 | I | e6tedI1 | I:10-59 | RNA_POL_M_15KD | 375 → 375.1 → 375.1.1 |
| 28 | I | e6tedI2 | I:60-125 | TFIIS_C | 375 → 375.1 → 375.1.1 |
| 29 | J | e6tedJ1 | J:1-66 | RNA_pol_N | 101 → 101.4 → 101.4.1 |
| 30 | K | e6tedK1 | K:1-115 | RNA_pol_L_2 | 305 → 305.1 → 305.1.1 |
| 31 | L | e6tedL1 | L:12-58 | DNA_RNApol_7kD | 375 → 375.1 → 375.1.1 |
| 32 | M | e6tedM1 | M:284-404 | HTH_44 | 101 → 101.26 → 101.26.1 |
| 33 | M | e6tedM2 | M:1422-1519 | SH2_2 | 214 → 214.1 → 214.1.1 |
| 34 | M | e6tedM3 | M:1145-1176,M:1226-1287 | Spt6_S1 | 2 → 2.1 → 2.1.1 |
| 35 | M | e6tedM4 | M:945-1039 | HHH_7 | 102 → 102.1 → 102.1.1 |
| 36 | M | e6tedM5 | M:1327-1421 | SH2_2 | 214 → 214.1 → 214.1.1 |
| 37 | M | e6tedM6 | M:405-421,M:442-470 | 632.13.1.0 | 632 → 632.13 → 632.13.1 |
| 38 | M | e6tedM7 | M:1040-1144 | HHH_9 | 102 → 102.1 → 102.1.1 |
| 39 | M | e6tedM8 | M:757-944 | YqgF | 2484 → 2484.1 → 2484.1.1 |
| 40 | M | e6tedM9 | M:470-477,M:538-756 | Tex_central_region | 4342 → 4342.1 → 4342.1.1 |
| 41 | Q | e6tedQ01 | Q:1-246,Q:391-393 | TPR_8, TPR_16, TPR_19 | 109 → 109.4 → 109.4.1 |
| 42 | Q | e6tedQ02 | Q:306-390,Q:394-409 | TPR_2,TPR_8 | 109 → 109.4 → 109.4.1 |
| 43 | Q | e6tedQ03 | Q:502-763 | TPR_8, TPR_16, TPR_19 | 109 → 109.4 → 109.4.1 |
| 44 | W | e6tedW1 | W:5-304 | WD40, ANAPC4_WD40, Beta-prop_NOL10_N | 5 → 5.1 → 5.1.4 |
| 45 | X | e6tedX01 | X:1-111 | CDC73_N | 101 → 101.46 → 101.46.1 |
| 46 | X | e6tedX02 | X:358-523 | CDC73_C | 2004 → 2004.1 → 2004.1.1 |
| 47 | Y | e6tedY1 | Y:2-117 | Spt4 | 375 → 375.1 → 375.1.1 |
| 48 | Z | e6tedZ1 | Z:270-396 | KOW1_SPT5 | 4 → 4.1 → 4.1.1 |
| 49 | Z | e6tedZ2 | Z:176-269 | Spt5-NGN | 304 → 304.17 → 304.17.1 |
| 50 | Z | e6tedZ3 | Z:471-526 | KOW | 4 → 4.1 → 4.1.1 |
| 51 | Z | e6tedZ4 | Z:416-470 | KOW2_Spt5 | 4 → 4.1 → 4.1.1 |
| 52 | Z | e6tedZ5 | Z:581-646 | KOW4_SPT5 | 4 → 4.1 → 4.1.1 |
| 53 | Z | e6tedZ6 | Z:703-754 | KOW5_SPT5 | 4 → 4.1 → 4.1.1 |
| 54 | Z | e6tedZ7 | Z:527-580 | KOWx_SPT5 | 4 → 4.1 → 4.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors