PDB 8UHD
ELECTRON MICROSCOPY0 chains36 ECOD domains
3D Structure(domains colored, ligands/nucleic acids shown)
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Domains by Chain
Chain Aview chain
7 domainsChain Bview chain
7 domainsChain Cview chain
2 domainsChain Dview chain
1 domainChain Eview chain
2 domainsChain Fview chain
1 domainChain Gview chain
2 domainsChain Hview chain
1 domainChain Iview chain
2 domainsChain Jview chain
1 domainChain Kview chain
1 domainChain Lview chain
1 domainChain Yview chain
1 domainAll Domains (36)
| # | Chain | Domain ID | Range | Family | Classification |
|---|---|---|---|---|---|
| 1 | A | e8uhdA1 | A:686-894 | RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 | 4958 → 4958.1 → 4958.1.1 |
| 2 | A | e8uhdA2 | A:895-1082 | RNA_pol_Rpb1_6 | 4957 → 4957.1 → 4957.1.1 |
| 3 | A | e8uhdA3 | A:534-685 | RNA_pol_Rpb1_3 | 4959 → 4959.1 → 4959.1.1 |
| 4 | A | e8uhdA4 | A:1152-1308 | RNA_pol_Rpb1_7 | 4955 → 4955.1 → 4955.1.1 |
| 5 | A | e8uhdA5 | A:364-533 | RNA_pol_Rpb1_2 | 1 → 1.1 → 1.1.2 |
| 6 | A | e8uhdA6 | A:1083-1135,A:1361-1415,A:1469-1484 | RNA_pol_Rpb1_5 | 4954 → 4954.1 → 4954.1.1 |
| 7 | A | e8uhdA7 | A:1136-1151,A:1309-1360 | 4956.1.1.0 | 4956 → 4956.1 → 4956.1.1 |
| 8 | B | e8uhdB1 | B:529-618 | RNA_pol_Rpb2_4 | 4961 → 4961.1 → 4961.1.1 |
| 9 | B | e8uhdB2 | B:16-67,B:87-200,B:392-528 | RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 4010 → 4010.1 → 4010.1.1 |
| 10 | B | e8uhdB3 | B:806-929 | RNA_pol_Rpb2_6 | 325 → 325.1 → 325.1.7 |
| 11 | B | e8uhdB4 | B:1054-1174 | RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 | 4043 → 4043.1 → 4043.1.1 |
| 12 | B | e8uhdB5 | B:769-805,B:930-1053 | RNA_pol_Rpb2_6 | 1 → 1.1 → 1.1.2 |
| 13 | B | e8uhdB6 | B:619-768 | 4042.1.1.0 | 4042 → 4042.1 → 4042.1.1 |
| 14 | B | e8uhdB7 | B:201-391 | RNA_pol_Rpb2_2 | 4041 → 4041.1 → 4041.1.1 |
| 15 | C | e8uhdC1 | C:2-42,C:179-271 | RNA_pol_L | 305 → 305.1 → 305.1.1 |
| 16 | C | e8uhdC2 | C:43-178 | RNA_pol_A_bac | 240 → 240.2 → 240.2.1 |
| 17 | D | e8uhdD1 | D:14-142 | RNA_pol_Rpb4 | 102 → 102.1 → 102.1.1 |
| 18 | E | e8uhdE1 | E:139-210 | RNA_pol_Rpb5_C | 840 → 840.1 → 840.1.1 |
| 19 | E | e8uhdE2 | E:2-138 | RNA_pol_Rpb5_N | 2008 → 2008.3 → 2008.3.1 |
| 20 | F | e8uhdF1 | F:46-127 | RNA_pol_Rpb6 | 152 → 152.1 → 152.1.1 |
| 21 | G | e8uhdG1 | G:79-171 | S1 | 2 → 2.1 → 2.1.1 |
| 22 | G | e8uhdG2 | G:1-77 | SHS2_Rpb7-N | 872 → 872.1 → 872.1.1 |
| 23 | H | e8uhdH1 | H:1-150 | RNA_pol_Rpb8 | 2 → 2.1 → 2.1.1 |
| 24 | I | e8uhdI1 | I:1-59 | RNA_POL_M_15KD | 375 → 375.1 → 375.1.1 |
| 25 | I | e8uhdI2 | I:60-125 | TFIIS_C | 375 → 375.1 → 375.1.1 |
| 26 | J | e8uhdJ1 | J:1-67 | RNA_pol_N | 101 → 101.4 → 101.4.1 |
| 27 | K | e8uhdK1 | K:1-115 | RNA_pol_L_2 | 305 → 305.1 → 305.1.1 |
| 28 | L | e8uhdL1 | L:15-58 | DNA_RNApol_7kD | 375 → 375.1 → 375.1.1 |
| 29 | Y | e8uhdY1 | Y:2-117 | Spt4 | 375 → 375.1 → 375.1.1 |
| 30 | Z | e8uhdZ1 | Z:270-396 | KOW1_SPT5 | 4 → 4.1 → 4.1.1 |
| 31 | Z | e8uhdZ2 | Z:176-269 | Spt5-NGN | 304 → 304.17 → 304.17.1 |
| 32 | Z | e8uhdZ3 | Z:471-526 | KOW | 4 → 4.1 → 4.1.1 |
| 33 | Z | e8uhdZ4 | Z:416-470 | KOW2_Spt5 | 4 → 4.1 → 4.1.1 |
| 34 | Z | e8uhdZ5 | Z:581-646 | KOW4_SPT5 | 4 → 4.1 → 4.1.1 |
| 35 | Z | e8uhdZ6 | Z:703-754 | KOW5_SPT5 | 4 → 4.1 → 4.1.1 |
| 36 | Z | e8uhdZ7 | Z:527-580 | KOWx_SPT5 | 4 → 4.1 → 4.1.1 |
Visualization Legend
ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors