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PDB 8YDJ

0 chains89 ECOD domains
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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

All Domains (89)

#ChainDomain IDRangeFamilyClassification
1ae8ydja1a:69-159Ribosomal_L12007 → 2007.25 → 2007.25.1
2ae8ydja2a:1-68,a:160-234Ribosomal_L1898 → 898.1 → 898.1.1
3Ae8ydjA1A:1-70Ribosomal_L314987 → 4987.1 → 4987.1.1
4A1e8ydjA11A1:53-178RNA_pol_A_bac240 → 240.2 → 240.2.1
5A1e8ydjA12A1:237-328RNA_pol_A_CTD102 → 102.1 → 102.1.1
6A1e8ydjA13A1:2-52,A1:179-236RNA_pol_L305 → 305.1 → 305.1.1
7A2e8ydjA21A2:53-178RNA_pol_A_bac240 → 240.2 → 240.2.1
8A2e8ydjA22A2:237-328RNA_pol_A_CTD102 → 102.1 → 102.1.1
9A2e8ydjA23A2:2-52,A2:179-236RNA_pol_L305 → 305.1 → 305.1.1
10be8ydjb1b:4-125Ribosomal_L22 → 2.1 → 2.1.1
11be8ydjb2b:126-270Ribosomal_L2_C4 → 4.1 → 4.1.1
12Be8ydjB1B:2-57Ribosomal_L32p375 → 375.1 → 375.1.1
13B1e8ydjB11B1:14-341RNA_pol_Rpb1_14246 → 4246.1 → 4246.1.1
14B1e8ydjB12B1:639-810RNA_pol_Rpb1_5,RNA_pol_Rpb1_44958 → 4958.1 → 4958.1.1
15B1e8ydjB13B1:895-931,B1:1214-1389RNA_pol_Rpb1_54954 → 4954.1 → 4954.1.1
16B1e8ydjB14B1:499-638RNA_pol_Rpb1_34959 → 4959.1 → 4959.1.1
17B1e8ydjB15B1:334-498RNA_pol_Rpb1_21 → 1.1 → 1.1.2
18B1e8ydjB16B1:1023-1151325.1.7.0325 → 325.1 → 325.1.7
19B1e8ydjB17B1:811-894275.1.1.0275 → 275.1 → 275.1.1
20B1e8ydjB18B1:932-1022325.1.7.0325 → 325.1 → 325.1.7
21B1e8ydjB19B1:1152-1215325.1.7.0325 → 325.1 → 325.1.7
22B2e8ydjB21B2:1238-1342RNA_pol_Rpb2_6,RNA_pol_Rpb2_74043 → 4043.1 → 4043.1.1
23B2e8ydjB22B2:153-226,B2:343-451RNA_pol_Rpb2_24041 → 4041.1 → 4041.1.1
24B2e8ydjB23B2:828-942,B2:1042-1062RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
25B2e8ydjB24B2:791-828,B2:1060-1125,B2:1180-1237RNA_pol_Rpb2_61 → 1.1 → 1.1.2
26B2e8ydjB25B2:713-790RNA_pol_Rpb2_6325 → 325.1 → 325.1.7
27B2e8ydjB26B2:10-152,B2:450-577RNA_pol_Rpb2_1,RNA_pol_Rpb2_34010 → 4010.1 → 4010.1.1
28B2e8ydjB27B2:578-714RNA_pol_Rpb2_454042 → 4042.1 → 4042.1.1
29ce8ydjc1c:1-209Ribosomal_L31 → 1.1 → 1.1.7
30Ce8ydjC1C:4-53Ribosomal_L33375 → 375.1 → 375.1.1
31de8ydjd1d:1-198Ribosomal_L47559 → 7559.1 → 7559.1.1
32De8ydjD1D:1-46Ribosomal_L343074 → 3074.1 → 3074.1.1
33ee8ydje1e:2-179Ribosomal_L5,Ribosomal_L5_C882 → 882.1 → 882.1.1
34Ee8ydjE1E:2-65Ribosomal_L35p4281 → 4281.1 → 4281.1.1
35fe8ydjf1f:2-82Ribosomal_L6318 → 318.1 → 318.1.1
36fe8ydjf2f:83-177Ribosomal_L6318 → 318.1 → 318.1.1
37Fe8ydjF1F:1-38Ribosomal_L36919 → 919.1 → 919.1.1
38ge8ydjg1g:1-52Ribosomal_L9_N4076 → 4076.1 → 4076.1.1
39ge8ydjg2g:56-149Ribosomal_L9_C523 → 523.1 → 523.1.1
40Ge8ydjG1G:9-226Ribosomal_S22007 → 2007.6 → 2007.6.1
41He8ydjH1H:107-207Ribosomal_S3_C230 → 230.2 → 230.2.1
42He8ydjH2H:2-106KH_2327 → 327.11 → 327.11.1
43ie8ydji1i:2-72Ribosomal_L11_N3781 → 3781.1 → 3781.1.1
44ie8ydji2i:73-142Ribosomal_L11101 → 101.1 → 101.1.16
45Ie8ydjI1I:2-206Ribosomal_S4,S4221 → 221.1 → 221.1.2
46je8ydjj1j:1-140Ribosomal_L132490 → 2490.2 → 2490.2.1
47Je8ydjJ1J:79-166Ribosomal_S5_C212 → 212.1 → 212.1.1
48Je8ydjJ2J:10-78Ribosomal_S5330 → 330.1 → 330.1.1
49ke8ydjk1k:2-122Ribosomal_L143174 → 3174.1 → 3174.1.1
50Ke8ydjK1K:1-100Ribosomal_S6304 → 304.12 → 304.12.1
51le8ydjl1l:1-144Ribosomal_L27A, PF294712490 → 2490.3 → 2490.3.1
52Le8ydjL1L:2-152Ribosomal_S7167 → 167.1 → 167.1.1
53me8ydjm1m:1-136Ribosomal_L16325 → 325.1 → 325.1.5
54Me8ydjM1M:2-66Ribosomal_S8320 → 320.2 → 320.2.1
55Me8ydjM2M:67-130Ribosomal_S84988 → 4988.1 → 4988.1.1
56ne8ydjn1n:14-117Ribosomal_L17218 → 218.3 → 218.3.1
57Ne8ydjN1N:4-130Ribosomal_S9212 → 212.1 → 212.1.1
58NAe8ydjNA1NA:1-127NusA_N885 → 885.1 → 885.1.1
59NAe8ydjNA2NA:199-278KH_5327 → 327.11 → 327.11.1
60NAe8ydjNA3NA:126-199S12 → 2.1 → 2.1.1
61NAe8ydjNA4NA:345-422102.1.1.0102 → 102.1 → 102.1.1
62NAe8ydjNA5NA:423-495HHH_5102 → 102.1 → 102.1.1
63NAe8ydjNA6NA:279-346KH_NusA_2nd327 → 327.11 → 327.11.1
64NGe8ydjNG1NG:123-181KOW4 → 4.1 → 4.1.1
65oe8ydjo1o:1-117Ribosomal_L18p2484 → 2484.1 → 2484.1.1
66Oe8ydjO1O:5-102Ribosomal_S10304 → 304.44 → 304.44.1
67pe8ydjp1p:2-115Ribosomal_L194 → 4.1 → 4.1.1
68Pe8ydjP1P:13-128Ribosomal_S112484 → 2484.1 → 2484.1.1
69qe8ydjq1q:2-118Ribosomal_L20143 → 143.2 → 143.2.1
70Qe8ydjQ1Q:2-124Ribosom_S12_S232 → 2.1 → 2.1.1
71re8ydjr1r:1-103Ribosomal_L21p4186 → 4186.1 → 4186.1.1
72Re8ydjR1R:2-115Ribosomal_S13102 → 102.2 → 102.2.1
73se8ydjs1s:1-110Ribosomal_L22218 → 218.2 → 218.2.1
74Se8ydjS1S:2-101Ribosomal_S14377 → 377.1 → 377.1.1
75te8ydjt1t:6-99Ribosomal_L23304 → 304.109 → 304.109.1
76Te8ydjT1T:2-87Ribosomal_S15616 → 616.1 → 616.1.1
77ue8ydju1u:2-103KOW,ribosomal_L244 → 4.1 → 4.1.1
78Ue8ydjU1U:1-82Ribosomal_S16837 → 837.1 → 837.1.1
79ve8ydjv1v:1-94Ribosomal_L25p239 → 239.1 → 239.1.1
80Ve8ydjV1V:4-83Ribosomal_S172 → 2.1 → 2.1.1
81we8ydjw1w:7-85Ribosomal_L27325 → 325.1 → 325.1.8
82We8ydjW1W:10-74Ribosomal_S18101 → 101.1 → 101.1.1
83W0e8ydjW01W0:2-90RNA_pol_Rpb6152 → 152.1 → 152.1.2
84xe8ydjx1x:2-78Ribosomal_L284232 → 4232.1 → 4232.1.1
85Xe8ydjX1X:3-81Ribosomal_S19838 → 838.1 → 838.1.1
86ye8ydjy1y:1-60Ribosomal_L29192 → 192.4 → 192.4.1
87Ye8ydjY1Y:3-87Ribosomal_S20p604 → 604.9 → 604.9.1
88ze8ydjz1z:2-59Ribosomal_L30887 → 887.1 → 887.1.1
89Ze8ydjZ1Z:4-68Ribosomal_S213666 → 3666.1 → 3666.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors