254780474
ubiquinol oxidase, subunit II
GeneID in NCBI database: | 8209463 | Locus tag: | CLIBASIA_01795 |
Protein GI in NCBI database: | 254780474 | Protein Accession: | YP_003064887.1 |
Gene range: | -(396737, 397735) | Protein Length: | 332aa |
Gene description: | ubiquinol oxidase, subunit II | ||
COG prediction: | [C] Heme/copper-type cytochrome/quinol oxidases, subunit 2 | ||
KEGG prediction: | cyoA; ubiquinol oxidase, subunit II; K02297 cytochrome o ubiquinol oxidase subunit II [EC:1.10.3.-] | ||
SEED prediction: | Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) | ||
Pathway involved in KEGG: | Oxidative phosphorylation [PATH:las00190] | ||
Subsystem involved in SEED: | Terminal cytochrome O ubiquinol oxidase | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
Identity | Alignment graph | Length | Definition | E-value | |
Target | 332 | ubiquinol oxidase, subunit II [Candidatus Liberibacter | |||
254780586 | 101 | BolA family protein [Candidatus Liberibacter asiat | 0.016 |
>gi|254780586|ref|YP_003064999.1| BolA family protein [Candidatus Liberibacter asiaticus str. psy62] Length = 101 | Back alignment |
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Score = 32.0 bits (71), Expect = 0.016, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 13/78 (16%) Query: 211 VMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKVKRQGTFLNRQEYLLLKKP 270 V+N+ + G ++G G +H+R K + G ISK TF +R+ Y LL K Sbjct: 27 VINESHLHVGHQPQFNGLGETHIRIKIVSPTFTG----ISK-----TFRHRKIYDLLHKE 77 Query: 271 SERD----SVRYFSPIEK 284 + + S+ FSP EK Sbjct: 78 IKEELHALSIEAFSPDEK 95 |
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 332 | ubiquinol oxidase, subunit II [Candidatus Liberibacter | |||
315122070 | 329 | ubiquinol oxidase, subunit II [Candidatus Liberibacter | 1 | 1e-150 | |
150376513 | 392 | ubiquinol oxidase subunit II [Sinorhizobium medicae WSM | 1 | 1e-110 | |
16265063 | 386 | putative cytochrome o ubiquinol oxidase chain II protei | 1 | 1e-110 | |
227820109 | 385 | cytochrome O ubiquinol oxidase subunit II [Sinorhizobiu | 1 | 1e-108 | |
116255242 | 394 | putative ubiquinol oxidase polypeptide II precursor [Rh | 1 | 1e-107 | |
190895347 | 384 | cytochrome O ubiquinol oxidase protein, subunit II [Rhi | 1 | 1e-107 | |
209546365 | 390 | ubiquinol oxidase subunit II [Rhizobium leguminosarum b | 1 | 1e-106 | |
241667021 | 371 | ubiquinol oxidase, subunit II [Rhizobium leguminosarum | 1 | 1e-106 | |
86360308 | 371 | cytochrome O ubiquinol oxidase, subunit II protein [Rhi | 1 | 1e-106 | |
222084387 | 375 | ubiquinol oxidase, subunit II [Agrobacterium radiobacte | 1 | 1e-105 |
>gi|315122070|ref|YP_004062559.1| ubiquinol oxidase, subunit II [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 329 | Back alignment and organism information |
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Score = 534 bits (1375), Expect = e-150, Method: Compositional matrix adjust. Identities = 247/323 (76%), Positives = 289/323 (89%) Query: 8 MGVSVGKSLKFFFLFFSSVMLSGFEFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFS 67 M ++ K++KF LFFS V+LSGF+F+VM+PYGD+A QQA LI I+V+LMLLIVVPVFFS Sbjct: 1 MMANMTKNMKFVALFFSIVILSGFDFVVMNPYGDVASQQAGLIYISVSLMLLIVVPVFFS 60 Query: 68 ILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAVITWDATHRMDPYAPLE 127 ILFFAW+YR+TNKKA YDP W HST LE FVWL+PL+I+G LA ITWDATHRMDPYAPLE Sbjct: 61 ILFFAWRYRATNKKAHYDPAWYHSTRLEFFVWLIPLIIIGCLAAITWDATHRMDPYAPLE 120 Query: 128 RISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMN 187 RISE+KSI KNSK L+VEVVALDWKWLFL PEQ++A++NELVVP+DRPLEFRITASSVMN Sbjct: 121 RISENKSIPKNSKSLIVEVVALDWKWLFLFPEQKIAVVNELVVPVDRPLEFRITASSVMN 180 Query: 188 SFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFED 247 SFYIPGLAGQIYAM GMETKLHAVMN++GAYSGFSANYSG+GFSHMRF F+GKSEKGF+D Sbjct: 181 SFYIPGLAGQIYAMPGMETKLHAVMNREGAYSGFSANYSGKGFSHMRFTFHGKSEKGFDD 240 Query: 248 WISKVKRQGTFLNRQEYLLLKKPSERDSVRYFSPIEKGLYYSILNLCVHPGKICMDEMMR 307 W++KVKRQG L+RQ YLLL+KPSE+D V YFS +E GLY +I+N CVHP KICMDE+MR Sbjct: 241 WVAKVKRQGNCLDRQRYLLLEKPSEKDPVIYFSSVESGLYSAIMNFCVHPNKICMDEVMR 300 Query: 308 IDALGGGGMRGIDRHSLIYDEGY 330 I+A+GGGG++GIDR L+YDE Y Sbjct: 301 INAMGGGGVKGIDRRFLVYDEDY 323 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|150376513|ref|YP_001313109.1| ubiquinol oxidase subunit II [Sinorhizobium medicae WSM419] Length = 392 | Back alignment and organism information |
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>gi|16265063|ref|NP_437855.1| putative cytochrome o ubiquinol oxidase chain II protein [Sinorhizobium meliloti 1021] Length = 386 | Back alignment and organism information |
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>gi|227820109|ref|YP_002824080.1| cytochrome O ubiquinol oxidase subunit II [Sinorhizobium fredii NGR234] Length = 385 | Back alignment and organism information |
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>gi|116255242|ref|YP_771075.1| putative ubiquinol oxidase polypeptide II precursor [Rhizobium leguminosarum bv. viciae 3841] Length = 394 | Back alignment and organism information |
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>gi|190895347|ref|YP_001985639.1| cytochrome O ubiquinol oxidase protein, subunit II [Rhizobium etli CIAT 652] Length = 384 | Back alignment and organism information |
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>gi|209546365|ref|YP_002278255.1| ubiquinol oxidase subunit II [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 390 | Back alignment and organism information |
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>gi|241667021|ref|YP_002985105.1| ubiquinol oxidase, subunit II [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 371 | Back alignment and organism information |
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>gi|86360308|ref|YP_472196.1| cytochrome O ubiquinol oxidase, subunit II protein [Rhizobium etli CFN 42] Length = 371 | Back alignment and organism information |
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>gi|222084387|ref|YP_002542916.1| ubiquinol oxidase, subunit II [Agrobacterium radiobacter K84] Length = 375 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 332 | ubiquinol oxidase, subunit II [Candidatus Liberibacter | ||
PRK10525 | 315 | PRK10525, PRK10525, cytochrome o ubiquinol oxidase subu | 1e-86 | |
TIGR01433 | 226 | TIGR01433, CyoA, cytochrome o ubiquinol oxidase subunit | 3e-86 | |
TIGR01432 | 217 | TIGR01432, QOXA, cytochrome aa3 quinol oxidase, subunit | 7e-41 | |
TIGR02866 | 201 | TIGR02866, CoxB, cytochrome c oxidase, subunit II | 7e-25 | |
COG1622 | 247 | COG1622, CyoA, Heme/copper-type cytochrome/quinol oxida | 6e-62 | |
pfam06481 | 47 | pfam06481, COX_ARM, COX Aromatic Rich Motif | 1e-08 | |
KOG4767 | 231 | KOG4767, KOG4767, KOG4767, Cytochrome c oxidase, subuni | 8e-08 | |
MTH00023 | 240 | MTH00023, COX2, cytochrome c oxidase subunit II; Valida | 1e-04 | |
MTH00051 | 234 | MTH00051, COX2, cytochrome c oxidase subunit II; Provis | 4e-04 | |
pfam00116 | 120 | pfam00116, COX2, Cytochrome C oxidase subunit II, perip | 6e-04 | |
MTH00027 | 262 | MTH00027, COX2, cytochrome c oxidase subunit II; Provis | 8e-04 | |
MTH00185 | 230 | MTH00185, COX2, cytochrome c oxidase subunit II; Provis | 0.001 |
>gnl|CDD|182518 PRK10525, PRK10525, cytochrome o ubiquinol oxidase subunit II; Provisional | Back alignment and domain information |
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>gnl|CDD|130500 TIGR01433, CyoA, cytochrome o ubiquinol oxidase subunit II | Back alignment and domain information |
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>gnl|CDD|130499 TIGR01432, QOXA, cytochrome aa3 quinol oxidase, subunit II | Back alignment and domain information |
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>gnl|CDD|163049 TIGR02866, CoxB, cytochrome c oxidase, subunit II | Back alignment and domain information |
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>gnl|CDD|31809 COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion] | Back alignment and domain information |
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>gnl|CDD|148220 pfam06481, COX_ARM, COX Aromatic Rich Motif | Back alignment and domain information |
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>gnl|CDD|39964 KOG4767, KOG4767, KOG4767, Cytochrome c oxidase, subunit II, and related proteins [Energy production and conversion] | Back alignment and domain information |
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>gnl|CDD|177104 MTH00023, COX2, cytochrome c oxidase subunit II; Validated | Back alignment and domain information |
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>gnl|CDD|177126 MTH00051, COX2, cytochrome c oxidase subunit II; Provisional | Back alignment and domain information |
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>gnl|CDD|109183 pfam00116, COX2, Cytochrome C oxidase subunit II, periplasmic domain | Back alignment and domain information |
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>gnl|CDD|177106 MTH00027, COX2, cytochrome c oxidase subunit II; Provisional | Back alignment and domain information |
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>gnl|CDD|164736 MTH00185, COX2, cytochrome c oxidase subunit II; Provisional | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 332 | ubiquinol oxidase, subunit II [Candidatus Liberibacter | ||
PRK10525 | 305 | cytochrome o ubiquinol oxidase subunit II; Provisional | 100.0 | |
TIGR01433 | 228 | CyoA ubiquinol oxidase, subunit II; InterPro: IPR006333 | 100.0 | |
TIGR02866 | 249 | CoxB cytochrome c oxidase, subunit II; InterPro: IPR014 | 100.0 | |
TIGR01432 | 229 | QOXA cytochrome aa3 quinol oxidase, subunit II; InterPr | 100.0 | |
MTH00140 | 227 | COX2 cytochrome c oxidase subunit II; Provisional | 100.0 | |
MTH00129 | 230 | COX2 cytochrome c oxidase subunit II; Provisional | 100.0 | |
MTH00038 | 229 | COX2 cytochrome c oxidase subunit II; Provisional | 100.0 | |
MTH00154 | 226 | COX2 cytochrome c oxidase subunit II; Provisional | 100.0 | |
MTH00185 | 229 | COX2 cytochrome c oxidase subunit II; Provisional | 100.0 | |
MTH00051 | 247 | COX2 cytochrome c oxidase subunit II; Provisional | 100.0 | |
MTH00117 | 227 | COX2 cytochrome c oxidase subunit II; Provisional | 100.0 | |
MTH00139 | 223 | COX2 cytochrome c oxidase subunit II; Provisional | 100.0 | |
MTH00023 | 247 | COX2 cytochrome c oxidase subunit II; Validated | 100.0 | |
MTH00168 | 225 | COX2 cytochrome c oxidase subunit II; Provisional | 100.0 | |
MTH00076 | 228 | COX2 cytochrome c oxidase subunit II; Provisional | 100.0 | |
MTH00098 | 227 | COX2 cytochrome c oxidase subunit II; Validated | 100.0 | |
MTH00008 | 228 | COX2 cytochrome c oxidase subunit II; Validated | 100.0 | |
MTH00027 | 249 | COX2 cytochrome c oxidase subunit II; Provisional | 100.0 | |
MTH00080 | 231 | COX2 cytochrome c oxidase subunit II; Provisional | 100.0 | |
KOG4767 | 231 | consensus | 100.0 | |
COG1622 | 247 | CyoA Heme/copper-type cytochrome/quinol oxidases, subun | 100.0 | |
MTH00047 | 193 | COX2 cytochrome c oxidase subunit II; Provisional | 100.0 | |
pfam00116 | 120 | COX2 Cytochrome C oxidase subunit II, periplasmic domai | 100.0 | |
PTZ00047 | 163 | cytochrome C oxidase subunit II; Provisional | 100.0 | |
PRK02888 | 637 | nitrous-oxide reductase; Validated | 98.41 | |
TIGR03096 | 135 | nitroso_cyanin nitrosocyanin. Nitrosocyanin, as describ | 97.28 | |
COG4263 | 637 | NosZ Nitrous oxide reductase [Energy production and con | 96.28 | |
pfam06481 | 47 | COX_ARM COX Aromatic Rich Motif. COX2 (Cytochrome O ubi | 98.97 | |
pfam02790 | 83 | COX2_TM Cytochrome C oxidase subunit II, transmembrane | 98.54 | |
PRK10263 | 1355 | DNA translocase FtsK; Provisional | 93.15 | |
TIGR01477 | 395 | RIFIN variant surface antigen, rifin family; InterPro: | 92.87 | |
PTZ00042 | 304 | stevor; Provisional | 92.27 | |
pfam02009 | 289 | Rifin_STEVOR Rifin/stevor family. Several multicopy gen | 91.35 | |
PTZ00046 | 348 | rifin; Provisional | 90.25 |
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional | Back alignment and domain information |
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>TIGR01433 CyoA ubiquinol oxidase, subunit II; InterPro: IPR006333 Members of this domain catalyze the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water | Back alignment and domain information |
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>TIGR02866 CoxB cytochrome c oxidase, subunit II; InterPro: IPR014222 This entry contains subunit II (CoxB) of cytochrome c oxidase | Back alignment and domain information |
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>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II; InterPro: IPR006332 Members of this family catalyze the oxidation of quinol with the concomitant reduction of molecular oxygen to water | Back alignment and domain information |
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>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional | Back alignment and domain information |
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>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional | Back alignment and domain information |
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>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional | Back alignment and domain information |
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>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional | Back alignment and domain information |
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>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional | Back alignment and domain information |
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>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional | Back alignment and domain information |
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>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional | Back alignment and domain information |
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>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional | Back alignment and domain information |
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>MTH00023 COX2 cytochrome c oxidase subunit II; Validated | Back alignment and domain information |
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>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional | Back alignment and domain information |
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>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional | Back alignment and domain information |
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>MTH00098 COX2 cytochrome c oxidase subunit II; Validated | Back alignment and domain information |
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>MTH00008 COX2 cytochrome c oxidase subunit II; Validated | Back alignment and domain information |
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>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional | Back alignment and domain information |
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>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional | Back alignment and domain information |
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>KOG4767 consensus | Back alignment and domain information |
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>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion] | Back alignment and domain information |
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>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional | Back alignment and domain information |
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>pfam00116 COX2 Cytochrome C oxidase subunit II, periplasmic domain | Back alignment and domain information |
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>PTZ00047 cytochrome C oxidase subunit II; Provisional | Back alignment and domain information |
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>PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
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>TIGR03096 nitroso_cyanin nitrosocyanin | Back alignment and domain information |
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>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion] | Back alignment and domain information |
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>pfam06481 COX_ARM COX Aromatic Rich Motif | Back alignment and domain information |
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>pfam02790 COX2_TM Cytochrome C oxidase subunit II, transmembrane domain | Back alignment and domain information |
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>PRK10263 DNA translocase FtsK; Provisional | Back alignment and domain information |
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>TIGR01477 RIFIN variant surface antigen, rifin family; InterPro: IPR006373 Malaria is still a major cause of mortality in many areas of the world | Back alignment and domain information |
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>PTZ00042 stevor; Provisional | Back alignment and domain information |
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>pfam02009 Rifin_STEVOR Rifin/stevor family | Back alignment and domain information |
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>PTZ00046 rifin; Provisional | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 332 | ubiquinol oxidase, subunit II [Candidatus Liberibacter | ||
1fft_B | 315 | The Structure Of Ubiquinol Oxidase From Escherichia | 9e-86 | |
1cyx_A | 205 | Quinol Oxidase (Periplasmic Fragment Of Subunit Ii | 2e-55 | |
1cyw_A | 205 | Quinol Oxidase (Periplasmic Fragment Of Subunit Ii) | 4e-51 | |
1m56_B | 264 | Structure Of Cytochrome C Oxidase From Rhodobactor | 4e-43 | |
2gsm_B | 262 | Catalytic Core (Subunits I And Ii) Of Cytochrome C | 5e-42 | |
3om3_B | 256 | Catalytic Core Subunits (I And Ii) Of Cytochrome C | 1e-41 | |
1ar1_B | 298 | Structure At 2.7 Angstrom Resolution Of The Paracoc | 2e-41 | |
1qle_B | 252 | Cryo-Structure Of The Paracoccus Denitrificans Four | 3e-41 |
gi|11514518|pdb|1FFT|B Chain B, The Structure Of Ubiquinol Oxidase From Escherichia Coli Length = 315 | Back alignment and structure |
Score = 321 bits (823), Expect = 9e-86, Method: Composition-based stats. Identities = 130/310 (41%), Positives = 189/310 (60%), Gaps = 11/310 (3%) Query: 14 KSLKFFFLFFSSVMLSGFEFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAW 73 KSL + LF +V+LSG ++DP G I L+Q SLI A LML++V+P + FAW Sbjct: 8 KSLGWLSLFAGTVLLSGCNSALLDPKGQIGLEQRSLILTAFGLMLIVVIPAILMAVGFAW 67 Query: 74 KYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAVITWDATHRMDPYAPLERISESK 133 KYR++NK A+Y P W HS +E VW VP++I+ FLAV+TW TH ++P PL Sbjct: 68 KYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIFLAVLTWKTTHALEPSKPLAH----- 122 Query: 134 SIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPG 193 + KP+ +EVV++DWKW F+ PEQ +A +NE+ P + P+ F++T++SVMNSF+IP Sbjct: 123 ----DEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPVYFKVTSNSVMNSFFIPR 178 Query: 194 LAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSE-KGFEDWISKV 252 L QIYAMAGM+T+LH + N+ G Y G SA+YSG GFS M+FK + F+ W++K Sbjct: 179 LGSQIYAMAGMQTRLHLIANEPGTYDGISASYSGPGFSGMKFKAIATPDRAAFDQWVAKA 238 Query: 253 KRQGTFL-NRQEYLLLKKPSERDSVRYFSPIEKGLYYSILNLCVHPGKICMDEMMRIDAL 311 K+ + + + L PSE + V YFS ++ L+ ++N + GK + Sbjct: 239 KQSPNTMSDMAAFEKLAAPSEYNQVEYFSNVKPDLFADVINKFMAHGKSMDMTQPEGEHS 298 Query: 312 GGGGMRGIDR 321 GM G+D Sbjct: 299 AHEGMEGMDM 308 |
>gi|157830777|pdb|1CYX|A Chain A, Quinol Oxidase (Periplasmic Fragment Of Subunit Ii With Engineered Cu-A Binding Site)(Cyoa) Length = 205 | Back alignment and structure |
>gi|157830776|pdb|1CYW|A Chain A, Quinol Oxidase (Periplasmic Fragment Of Subunit Ii) (Cyoa) Length = 205 | Back alignment and structure |
>gi|23200455|pdb|1M56|B Chain B, Structure Of Cytochrome C Oxidase From Rhodobactor Sphaeroides (Wild Type) Length = 264 | Back alignment and structure |
>gi|118137842|pdb|2GSM|B Chain B, Catalytic Core (Subunits I And Ii) Of Cytochrome C Oxidase From Rhodobacter Sphaeroides Length = 262 | Back alignment and structure |
>gi|321159890|pdb|3OM3|B Chain B, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase From Rhodobacter Sphaeroides With K362m Mutation In The Reduced State Length = 256 | Back alignment and structure |
gi|2914142|pdb|1AR1|B Chain B, Structure At 2.7 Angstrom Resolution Of The Paracoccus Denitrificans Two-Subunit Cytochrome C Oxidase Complexed With An Antibody Fv Fragment Length = 298 | Back alignment and structure |
>gi|6730477|pdb|1QLE|B Chain B, Cryo-Structure Of The Paracoccus Denitrificans Four-Subunit Cytochrome C Oxidase In The Completely Oxidized State Complexed With An Antibody Fv Fragment Length = 252 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 332 | ubiquinol oxidase, subunit II [Candidatus Liberibacter | ||
1fft_B | 315 | Ubiquinol oxidase; electron transport, cytochrome oxida | 5e-81 | |
1cyx_A | 205 | CYOA; electron transport; 2.30A {Escherichia coli} SCOP | 1e-41 | |
3hb3_B | 298 | Cytochrome C oxidase subunit 2; electron transfer, prot | 6e-29 | |
2gsm_B | 262 | Cytochrome C oxidase subunit 2; transmembrane protein c | 3e-23 | |
1v54_B | 227 | Cytochrome C oxidase polypeptide II; oxidoreductase; HE | 8e-19 | |
1xme_B | 168 | Cytochrome C oxidase polypeptide II; cytochrome oxidase | 4e-17 | |
2cua_A | 135 | Protein (CUA); CUA center, electron transport; 1.60A {T | 5e-13 |
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1 Length = 315 | Back alignment and structure |
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Score = 296 bits (759), Expect = 5e-81 Identities = 132/309 (42%), Positives = 189/309 (61%), Gaps = 11/309 (3%) Query: 14 KSLKFFFLFFSSVMLSGFEFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAW 73 KSL + LF +V+LSG ++DP G I L+Q SLI A LML++V+P + FAW Sbjct: 8 KSLGWLSLFAGTVLLSGCNSALLDPKGQIGLEQRSLILTAFGLMLIVVIPAILMAVGFAW 67 Query: 74 KYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAVITWDATHRMDPYAPLERISESK 133 KYR++NK A+Y P W HS +E VW VP++I+ FLAV+TW TH ++P PL Sbjct: 68 KYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIFLAVLTWKTTHALEPSKPL------- 120 Query: 134 SIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPG 193 A + KP+ +EVV++DWKW F+ PEQ +A +NE+ P + P+ F++T++SVMNSF+IP Sbjct: 121 --AHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPVYFKVTSNSVMNSFFIPR 178 Query: 194 LAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKS-EKGFEDWISKV 252 L QIYAMAGM+T+LH + N+ G Y G SA+YSG GFS M+FK F+ W++K Sbjct: 179 LGSQIYAMAGMQTRLHLIANEPGTYDGISASYSGPGFSGMKFKAIATPDRAAFDQWVAKA 238 Query: 253 KRQG-TFLNRQEYLLLKKPSERDSVRYFSPIEKGLYYSILNLCVHPGKICMDEMMRIDAL 311 K+ T + + L PSE + V YFS ++ L+ ++N + GK + Sbjct: 239 KQSPNTMSDMAAFEKLAAPSEYNQVEYFSNVKPDLFADVINKFMAHGKSMDMTQPEGEHS 298 Query: 312 GGGGMRGID 320 GM G+D Sbjct: 299 AHEGMEGMD 307 |
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A Length = 205 | Back alignment and structure |
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>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B* Length = 298 | Back alignment and structure |
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>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 1m56_B* 1m57_B* Length = 262 | Back alignment and structure |
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>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2zxw_B* Length = 227 | Back alignment and structure |
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>1xme_B Cytochrome C oxidase polypeptide II; cytochrome oxidase, heme, heme-AS, integral membrane protein, oxidoreductase; HET: BNG HEM HAS; 2.30A {Thermus thermophilus} SCOP: b.6.1.2 f.17.2.1 PDB: 1ehk_B* 2qpd_B* 2qpe_B* 3bvd_B* 3eh5_B* 3eh3_B* 3eh4_B* Length = 168 | Back alignment and structure |
---|
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B* Length = 135 | Back alignment and structure |
---|
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 332 | ubiquinol oxidase, subunit II [Candidatus Liberibacter | ||
1fft_B | 315 | Ubiquinol oxidase; electron transport, cytochrome oxida | 100.0 | |
3hb3_B | 298 | Cytochrome C oxidase subunit 2; electron transfer, prot | 100.0 | |
2gsm_B | 262 | Cytochrome C oxidase subunit 2; transmembrane protein c | 100.0 | |
1v54_B | 227 | Cytochrome C oxidase polypeptide II; oxidoreductase; HE | 100.0 | |
1cyx_A | 205 | CYOA; electron transport; 2.30A {Escherichia coli} SCOP | 100.0 | |
1xme_B | 168 | Cytochrome C oxidase polypeptide II; cytochrome oxidase | 100.0 | |
2cua_A | 135 | Protein (CUA); CUA center, electron transport; 1.60A {T | 99.92 | |
1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cupredo | 98.92 | |
1qni_A | 581 | Nitrous-oxide reductase; oxidoreductase, denitrificatio | 98.65 | |
1qhq_A | 140 | Protein (auracyanin); electron transfer, cupredoxin, bl | 97.19 | |
2aan_A | 139 | Auracyanin A; cupredoxin fold, electron transport; 1.85 | 97.13 | |
3fsa_A | 125 | Azurin; copper, cupredoxin fold, metal-binding, protein | 96.58 | |
2ov0_A | 105 | Amicyanin; beta-sandwich, electron transport; 0.75A {Pa | 95.57 | |
1cuo_A | 129 | Protein (azurin ISO-2); beta barrel, periplasmic, elect | 95.42 | |
2iaa_C | 128 | Azurin; quinoprotein, tryptophan tryptophylquinone, cup | 94.97 | |
1nwp_A | 128 | Azurin; electron transport, cupredoxin, electron transf | 94.85 | |
2ccw_A | 129 | Azurin II, AZN-2; electron transport (cuproprotein), al | 94.44 | |
1oe1_A | 336 | Dissimilatory copper-containing nitrite reductase; deni | 91.5 | |
3cvb_A | 105 | Plastocyanin; cupredoxin, SELF assembly, copper, electr | 90.49 | |
1iby_A | 112 | Nitrosocyanin; RED copper, cupredoxin, beta hairpin, me | 99.34 | |
3c75_A | 132 | Amicyanin; copper proteins, electron transfer complex, | 96.89 | |
2dv6_A | 447 | Nitrite reductase; electron transfer, reduction, denitr | 96.7 | |
2cal_A | 154 | Rusticyanin; iron respiratory electron transport chain, | 96.12 | |
1id2_A | 106 | Amicyanin; beta barrel, type-1 blue copper protein, ele | 95.18 | |
1pcs_A | 98 | Plastocyanin; electron transport; 2.15A {Synechocystis | 93.31 | |
3gdc_A | 288 | Multicopper oxidase; beta sandwich, plasmid, oxidoreduc | 92.79 | |
2ux6_A | 122 | Pseudoazurin; type-1 copper, metal-binding, redox poten | 92.4 | |
1bxv_A | 91 | Plastocyanin; copper protein, electron transfer; 1.80A | 92.28 | |
1mzy_A | 333 | Copper-containing nitrite reductase; mutant M182T, gati | 91.56 | |
1kdj_A | 102 | Plastocyanin; electron transfer, photosystem, PAI-PAI s | 91.46 | |
3erx_A | 123 | Pseudoazurin; copper protein, high-resolution, C electr | 90.59 | |
3ef4_A | 124 | Pseudoazurin, blue copper protein; electron transfer, e | 90.58 | |
1byp_A | 99 | Protein (plastocyanin); electron transfer, photosynthes | 90.39 | |
2zoo_A | 442 | Probable nitrite reductase; electron transfer, electron | 96.12 | |
1pmy_A | 123 | Pseudoazurin; electron transfer(cuproprotein); 1.50A {M | 93.63 | |
1paz_A | 123 | Pseudoazurin precursor; electron transfer(cuproprotein) | 93.55 |
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1 | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=665.20 Aligned_cols=306 Identities=43% Similarity=0.802 Sum_probs=291.8 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC Q ss_conf 35668899999999998741364326898989999999999999999999999999999998853046777777875345 Q gi|254780474|r 11 SVGKSLKFFFLFFSSVMLSGFEFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCH 90 (332) Q Consensus 11 ~~~k~l~~~~l~~~~~lLsGC~~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~h 90 (332) +..|.++++++++++++|+||+.++|+|+|++|+++++|+++++++|++|+++|+++++||+||||+++++++|.|+++| T Consensus 5 ~~~r~l~~l~ll~~~~lLsGC~~~~l~P~G~~a~~~~~L~~~~~~l~l~V~v~v~~~~~~~~~ryR~~~~~~~~~p~~~~ 84 (315) T 1fft_B 5 KYNKSLGWLSLFAGTVLLSGCNSALLDPKGQIGLEQRSLILTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSPNWSH 84 (315) T ss_dssp ----------------------CCCSSCCSCCHHHHHHHHHHHHHHTTTTTTHHHHHHHTTTTTTTTSTTTCSSCCCCCC T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCC T ss_conf 36789999999999999965765445999978999999999999997767767666430034678843677777986355 Q ss_pred CCEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCEEEEE Q ss_conf 66125530227899999999999988775134442000012446788888668999998436999962678774306896 Q gi|254780474|r 91 STLLELFVWLVPLVIVGFLAVITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVV 170 (332) Q Consensus 91 s~~lEi~wt~iP~iIi~~L~~~t~~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~giatvneL~l 170 (332) |+++|++||++|++|+++|++++|++++.+|+++|. +.+++|++|+|+|+||+|+|+||++|++|+|||++ T Consensus 85 ~~~lE~i~~~ip~iivi~l~~~~~~~~~~~~~~~~~---------~~~~~~l~I~V~g~qW~W~f~Yp~~~~~t~neL~i 155 (315) T 1fft_B 85 SNKVEAVVWTVPILIIIFLAVLTWKTTHALEPSKPL---------AHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAF 155 (315) T ss_dssp CSHHHHHTTHHHHHHHHHHHHHHHHHSCTTCCSCCC---------CCCSCCCEEEEECCTTSCEEECTTTCCEEESBCCC T ss_pred CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---------CCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCC T ss_conf 745521567766899899999998888865124666---------67899849999866889999735666566765025 Q ss_pred ECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECC-HHHHHHHH Q ss_conf 36982899998358101102201074031169851489999427748966613326576113658999708-89999999 Q gi|254780474|r 171 PIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKS-EKGFEDWI 249 (332) Q Consensus 171 Pv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s-~~~f~~Wv 249 (332) |+|+||+|+|||+|||||||||+||+|+|+||||+|++||+|+++|+|+|+||||||.|||.|+|+|+|++ ++||++|+ T Consensus 156 P~~~pV~~~ltS~DViHsF~VP~l~~k~daiPG~~~~~~~~a~~~G~y~g~Cae~CG~gHs~M~~~v~vv~~~~~f~~Wv 235 (315) T 1fft_B 156 PANTPVYFKVTSNSVMNSFFIPRLGSQIYAMAGMQTRLHLIANEPGTYDGISASYSGPGFSGMKFKAIATPDRAAFDQWV 235 (315) T ss_dssp CSSSEEEEEECBSSSCEEEEEGGGTEEEEECBTSCEEEEEECCSCBCCEEBCCSCCSTTTTTCCEECCBCSSTHHHHHHH T ss_pred CCCCEEEEEEECCCCCCEEEECCCCCEEECCCCCEEEEEEECCCCEEEEEEEHHHCCCCCCCCEEEEEEECCHHHHHHHH T ss_conf 65530189997487112011320085663289861899996189548999805550711335653899987889999999 Q ss_pred HHHHCCCCCC-CHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCHHHCCCCHHH Q ss_conf 9986072456-989999976102126321720478354268731524448856602102466688523440110011 Q gi|254780474|r 250 SKVKRQGTFL-NRQEYLLLKKPSERDSVRYFSPIEKGLYYSILNLCVHPGKICMDEMMRIDALGGGGMRGIDRHSLI 325 (332) Q Consensus 250 ~~~ka~~~~l-~~~~y~~l~~ps~~~~~~~f~~~~~~lf~~i~~~~~~~~~~~~~~~m~~~~~~g~~~~~~~~~~~~ 325 (332) +++|+++.++ +.++|++|++|++.++++|||+++|+||+.|+++|+++|+.+...++..++.+++||+++|+...+ T Consensus 236 ~~~k~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~p~Lf~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~g~dm~~~~ 312 (315) T 1fft_B 236 AKAKQSPNTMSDMAAFEKLAAPSEYNQVEYFSNVKPDLFADVINKFMAHGKSMDMTQPEGEHSAHEGMEGMDMSHAE 312 (315) T ss_dssp HHHHHCSCCBCCHHHHHHHTSSCSSCCSEEESCBCTTHHHHHHHHTTC----------------------------- T ss_pred HHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 98661875566899999986775668853004779732889999873178877877644453447899987777654 |
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B* | Back alignment and structure |
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>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 1m56_B* 1m57_B* | Back alignment and structure |
---|
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* 3ag2_B* 3ag3_B* ... | Back alignment and structure |
---|
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A | Back alignment and structure |
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>1xme_B Cytochrome C oxidase polypeptide II; cytochrome oxidase, heme, heme-AS, integral membrane protein, oxidoreductase; HET: BNG HEM HAS; 2.30A {Thermus thermophilus} SCOP: b.6.1.2 f.17.2.1 PDB: 1ehk_B* 2qpd_B* 2qpe_B* 3bvd_B* 3eh5_B* 3eh3_B* 3eh4_B* | Back alignment and structure |
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>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B* | Back alignment and structure |
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>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site, oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
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>1qni_A Nitrous-oxide reductase; oxidoreductase, denitrification, MAD, electron transfer; 2.40A {Pseudomonas nautica} SCOP: b.6.1.4 b.69.3.1 | Back alignment and structure |
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>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin- like, thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A | Back alignment and structure |
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>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus} | Back alignment and structure |
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>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} PDB: 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 2iwe_A* 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A 1e5z_A 1e5y_A 1e67_A ... | Back alignment and structure |
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>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ... | Back alignment and structure |
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>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A | Back alignment and structure |
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>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C* | Back alignment and structure |
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>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A | Back alignment and structure |
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>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A | Back alignment and structure |
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>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* 1gs7_A* 2bp0_B 1gs6_X 2bo0_A* ... | Back alignment and structure |
---|
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A | Back alignment and structure |
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>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A | Back alignment and structure |
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>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
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>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans} | Back alignment and structure |
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>2cal_A Rusticyanin; iron respiratory electron transport chain, blue copper protein, copper, electron transport, metal- binding, periplasmic; 1.1A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A | Back alignment and structure |
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>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1 | Back alignment and structure |
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>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A | Back alignment and structure |
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>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP} | Back alignment and structure |
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>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A | Back alignment and structure |
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>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus pcc 7942} SCOP: b.6.1.1 PDB: 1bxu_A | Back alignment and structure |
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>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron transfer, oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A | Back alignment and structure |
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>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A | Back alignment and structure |
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>3erx_A Pseudoazurin; copper protein, high-resolution, C electron transport, metal-binding, periplasm, transport; 1.25A {Paracoccus pantotrophus} PDB: 1adw_A | Back alignment and structure |
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>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} | Back alignment and structure |
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>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A | Back alignment and structure |
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>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, metal-binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis TAC125} | Back alignment and structure |
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>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1 | Back alignment and structure |
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>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A* | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
332 | ubiquinol oxidase, subunit II [Candidatus Liberibacter | |||
d1cyxa_ | 158 | b.6.1.2 (A:) Quinol oxidase (CyoA) {Escherichia coli [T | 1e-31 | |
d1fftb2 | 91 | f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, sub | 3e-23 | |
d3dtub1 | 152 | b.6.1.2 (B:130-281) Cytochrome c oxidase {Rhodobacter s | 1e-17 | |
d3ehbb1 | 145 | b.6.1.2 (B:108-252) Cytochrome c oxidase {Paracoccus de | 3e-17 | |
d1v54b1 | 137 | b.6.1.2 (B:91-227) Cytochrome c oxidase {Cow (Bos tauru | 2e-16 | |
d2cuaa_ | 122 | b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus | 5e-14 |
>d1cyxa_ b.6.1.2 (A:) Quinol oxidase (CyoA) {Escherichia coli [TaxId: 562]} Length = 158 | Back information, alignment and structure |
---|
class: All beta proteins fold: Cupredoxin-like superfamily: Cupredoxins family: Periplasmic domain of cytochrome c oxidase subunit II domain: Quinol oxidase (CyoA) species: Escherichia coli [TaxId: 562] Score = 130 bits (328), Expect = 1e-31 Identities = 65/155 (41%), Positives = 98/155 (63%), Gaps = 2/155 (1%) Query: 140 KPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIY 199 KP+ +EVV++DWKW F+ PEQ +A +NE+ P + P+ F++T++SVM+SF+IP L QIY Sbjct: 1 KPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPVYFKVTSNSVMHSFFIPRLGSQIY 60 Query: 200 AMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYG-KSEKGFEDWISKVKRQG-T 257 AMAGM+T+LH + N+ G Y G A G G S M+FK F+ W++K K+ T Sbjct: 61 AMAGMQTRLHLIANEPGTYDGICAEICGPGHSGMKFKAIATPDRAAFDQWVAKAKQSPNT 120 Query: 258 FLNRQEYLLLKKPSERDSVRYFSPIEKGLYYSILN 292 + + L PSE + V YFS ++ L+ ++N Sbjct: 121 MSDMAAFEKLAAPSEYNQVEYFSNVKPDLFADVIN 155 |
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]} Length = 91 | Back information, alignment and structure |
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>d3dtub1 b.6.1.2 (B:130-281) Cytochrome c oxidase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 152 | Back information, alignment and structure |
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>d3ehbb1 b.6.1.2 (B:108-252) Cytochrome c oxidase {Paracoccus denitrificans [TaxId: 266]} Length = 145 | Back information, alignment and structure |
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>d1v54b1 b.6.1.2 (B:91-227) Cytochrome c oxidase {Cow (Bos taurus) [TaxId: 9913]} Length = 137 | Back information, alignment and structure |
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>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]} Length = 122 | Back information, alignment and structure |
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Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 332 | ubiquinol oxidase, subunit II [Candidatus Liberibacter | ||
d1cyxa_ | 158 | Quinol oxidase (CyoA) {Escherichia coli [TaxId: 562]} | 100.0 | |
d3ehbb1 | 145 | Cytochrome c oxidase {Paracoccus denitrificans [TaxId: | 100.0 | |
d1v54b1 | 137 | Cytochrome c oxidase {Cow (Bos taurus) [TaxId: 9913]} | 100.0 | |
d3dtub1 | 152 | Cytochrome c oxidase {Rhodobacter sphaeroides [TaxId: 1 | 100.0 | |
d2cuaa_ | 122 | Cytochrome c oxidase {Thermus thermophilus, ba3 type [T | 99.93 | |
d1qnia1 | 131 | Nitrous oxide reductase, C-terminal domain {Pseudomonas | 99.83 | |
d1fwxa1 | 132 | Nitrous oxide reductase, C-terminal domain {Paracoccus | 99.7 | |
d1qhqa_ | 139 | Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]} | 97.33 | |
d2ccwa1 | 129 | Azurin {Alcaligenes xylosoxidans, NCIMB (11015), differ | 96.07 | |
d1cuoa_ | 129 | Azurin {Methylomonas sp. j [TaxId: 32038]} | 95.52 | |
d1jzga_ | 128 | Azurin {Pseudomonas aeruginosa [TaxId: 287]} | 95.14 | |
d1nwpa_ | 128 | Azurin {Pseudomonas putida [TaxId: 303]} | 94.69 | |
d2ov0a1 | 105 | Amicyanin {Paracoccus denitrificans [TaxId: 266]} | 94.33 | |
d1fftb2 | 91 | Cytochrome O ubiquinol oxidase, subunit II {Escherichia | 99.81 | |
d3dtub2 | 100 | Bacterial aa3 type cytochrome c oxidase subunit II {Rho | 99.48 | |
d3ehbb2 | 107 | Bacterial aa3 type cytochrome c oxidase subunit II {Par | 99.42 | |
d1v54b2 | 90 | Mitochondrial cytochrome c oxidase, subunit II {Cow (Bo | 98.77 | |
d1ibya_ | 112 | Red copper protein nitrosocyanin {Nitrosomonas europaea | 99.42 | |
d1e30a_ | 153 | Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920]} | 95.88 | |
d1id2a_ | 106 | Amicyanin {Paracoccus versutus (Thiobacillus versutus) | 95.09 | |
d2jxma1 | 97 | Plastocyanin {Photosynthetic prokaryote (Prochlorothrix | 94.43 | |
d1bqka_ | 124 | Pseudoazurin {Achromobacter cycloclastes [TaxId: 223]} | 94.42 | |
d1pcsa_ | 98 | Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 6 | 92.6 | |
d1bypa_ | 99 | Plastocyanin {White campion (Silene pratensis) [TaxId: | 92.29 | |
d1adwa_ | 123 | Pseudoazurin {Thiosphaera pantotropha [TaxId: 82367]} | 92.2 | |
d2q5ba1 | 105 | Plastocyanin {Cyanobacterium (Phormidium laminosum) [Ta | 92.12 | |
d1bxua_ | 91 | Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 7 | 91.44 | |
d1kcwa2 | 146 | Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} | 91.3 | |
d1kdja_ | 102 | Plastocyanin {Fern (Adiantum capillus-veneris) [TaxId: | 90.23 | |
d1pmya_ | 123 | Pseudoazurin {Methylobacterium extorquens, strain am1 [ | 92.61 |
>d1cyxa_ b.6.1.2 (A:) Quinol oxidase (CyoA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: All beta proteins fold: Cupredoxin-like superfamily: Cupredoxins family: Periplasmic domain of cytochrome c oxidase subunit II domain: Quinol oxidase (CyoA) species: Escherichia coli [TaxId: 562] Probab=100.00 E-value=0 Score=388.84 Aligned_cols=156 Identities=41% Similarity=0.832 Sum_probs=151.6 Q ss_pred CCEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEE Q ss_conf 86689999984369999626787743068963698289999835810110220107403116985148999942774896 Q gi|254780474|r 140 KPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYS 219 (332) Q Consensus 140 ~~l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~ 219 (332) ||++|+|+|+||+|+|+||++|+.|+|||++|+|+||+|.|||.|||||||||+|++|+|+||||.|++||+++++|+|+ T Consensus 1 KP~~I~V~g~QW~W~f~Yp~~~i~t~n~l~lP~g~pV~~~ltS~DViHsF~vP~l~~k~daiPG~~~~~~~~~~~~G~y~ 80 (158) T d1cyxa_ 1 KPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPVYFKVTSNSVMHSFFIPRLGSQIYAMAGMQTRLHLIANEPGTYD 80 (158) T ss_dssp CCEEEEEEEETTEEEEEETTTTEEEESEEEEETTSCEEEEEEESSSCEEEEEGGGTEEEEECTTCCEEEEECCSSSEEEE T ss_pred CCEEEEEEEEECEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCCHHHHHHHCCEEECCCCCCEEEEEEEECCCCCEE T ss_conf 98899999995408988089996512128960797689999759841045664100012027986055665505887388 Q ss_pred EECCCCCCCCCCCCEEEEEEC-CHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHCCCC Q ss_conf 661332657611365899970-8899999999986072456-989999976102126321720478354268731524 Q gi|254780474|r 220 GFSANYSGRGFSHMRFKFYGK-SEKGFEDWISKVKRQGTFL-NRQEYLLLKKPSERDSVRYFSPIEKGLYYSILNLCV 295 (332) Q Consensus 220 G~cae~cG~ghs~M~f~v~v~-s~~~f~~Wv~~~ka~~~~l-~~~~y~~l~~ps~~~~~~~f~~~~~~lf~~i~~~~~ 295 (332) |+|+||||.||+.|+|+++++ ++++|++|++++|+++.++ +.++|++|++|++.+++++|+++.|+||+.|+++|| T Consensus 81 g~Cae~CG~gH~~M~~~v~vv~~~~~f~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Lf~~vv~~~~ 158 (158) T d1cyxa_ 81 GICAEICGPGHSGMKFKAIATPDRAAFDQWVAKAKQSPNTMSDMAAFEKLAAPSEYNQVEYFSNVKPDLFADVINKFM 158 (158) T ss_dssp EEECSCCSTTSTTCCEEEEEESSHHHHHHHHHHHHTCSCCBCSHHHHHHHHSCCSSCCCEEESCBCTTHHHHHHTTTC T ss_pred EECHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHCC T ss_conf 871432071224583699997999999999998673854454256799986786778815642689826999998519 |
>d3ehbb1 b.6.1.2 (B:108-252) Cytochrome c oxidase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
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>d1v54b1 b.6.1.2 (B:91-227) Cytochrome c oxidase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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>d3dtub1 b.6.1.2 (B:130-281) Cytochrome c oxidase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
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>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]} | Back information, alignment and structure |
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>d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
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>d1fwxa1 b.6.1.4 (A:452-581) Nitrous oxide reductase, C-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
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>d1qhqa_ b.6.1.1 (A:) Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
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>d2ccwa1 b.6.1.1 (A:1-129) Azurin {Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]} | Back information, alignment and structure |
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>d1cuoa_ b.6.1.1 (A:) Azurin {Methylomonas sp. j [TaxId: 32038]} | Back information, alignment and structure |
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>d1jzga_ b.6.1.1 (A:) Azurin {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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>d1nwpa_ b.6.1.1 (A:) Azurin {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
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>d2ov0a1 b.6.1.1 (A:1-105) Amicyanin {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
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>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
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>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
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>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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>d1ibya_ b.6.1.4 (A:) Red copper protein nitrosocyanin {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
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>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920]} | Back information, alignment and structure |
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>d1id2a_ b.6.1.1 (A:) Amicyanin {Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
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>d2jxma1 b.6.1.1 (A:1-97) Plastocyanin {Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]} | Back information, alignment and structure |
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>d1bqka_ b.6.1.1 (A:) Pseudoazurin {Achromobacter cycloclastes [TaxId: 223]} | Back information, alignment and structure |
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>d1pcsa_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]} | Back information, alignment and structure |
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>d1bypa_ b.6.1.1 (A:) Plastocyanin {White campion (Silene pratensis) [TaxId: 52853]} | Back information, alignment and structure |
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>d1adwa_ b.6.1.1 (A:) Pseudoazurin {Thiosphaera pantotropha [TaxId: 82367]} | Back information, alignment and structure |
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>d2q5ba1 b.6.1.1 (A:1-105) Plastocyanin {Cyanobacterium (Phormidium laminosum) [TaxId: 32059]} | Back information, alignment and structure |
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>d1bxua_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]} | Back information, alignment and structure |
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>d1kcwa2 b.6.1.3 (A:193-338) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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>d1kdja_ b.6.1.1 (A:) Plastocyanin {Fern (Adiantum capillus-veneris) [TaxId: 13818]} | Back information, alignment and structure |
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>d1pmya_ b.6.1.1 (A:) Pseudoazurin {Methylobacterium extorquens, strain am1 [TaxId: 408]} | Back information, alignment and structure |
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Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 332 | ubiquinol oxidase, subunit II [Candidatus Liberiba | ||
1fft_B_119-315 | 197 | (B:119-315) Ubiquinol oxidase; electron transport, | 2e-29 | |
1cyx_A_ | 205 | (A:) CYOA; electron transport; 2.30A {Escherichia | 4e-25 | |
2gsm_B_103-262 | 160 | (B:103-262) Cytochrome C oxidase subunit 2; transm | 4e-16 | |
3hb3_B_137-298 | 162 | (B:137-298) Cytochrome C oxidase subunit 2; electr | 6e-12 | |
1v54_B_92-227 | 136 | (B:92-227) Cytochrome C oxidase polypeptide II; ox | 2e-09 | |
1xme_B_55-168 | 114 | (B:55-168) Cytochrome C oxidase polypeptide II; cy | 3e-09 | |
2cua_A_ | 135 | (A:) Protein (CUA); CUA center, electron transport | 1e-07 | |
1qni_A_453-581 | 129 | (A:453-581) Nitrous-oxide reductase; oxidoreductas | 7e-07 | |
1fwx_A_45-81_463-595 | 170 | (A:45-81,A:463-595) Nitrous oxide reductase; beta- | 2e-05 |
>1fft_B (B:119-315) Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli}Length = 197 | Back alignment and structure |
---|
Score = 124 bits (311), Expect = 2e-29 Identities = 75/185 (40%), Positives = 113/185 (61%), Gaps = 2/185 (1%) Query: 138 NSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQ 197 + KP+ +EVV++DWKW F+ PEQ +A +NE+ P + P+ F++T++SVMNSF+IP L Q Sbjct: 5 DEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPVYFKVTSNSVMNSFFIPRLGSQ 64 Query: 198 IYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKS-EKGFEDWISKVKRQG 256 IYAMAGM+T+LH + N+ G Y G SA+YSG GFS M+FK F+ W++K K+ Sbjct: 65 IYAMAGMQTRLHLIANEPGTYDGISASYSGPGFSGMKFKAIATPDRAAFDQWVAKAKQSP 124 Query: 257 TFLNRQE-YLLLKKPSERDSVRYFSPIEKGLYYSILNLCVHPGKICMDEMMRIDALGGGG 315 ++ + L PSE + V YFS ++ L+ ++N + GK + G Sbjct: 125 NTMSDMAAFEKLAAPSEYNQVEYFSNVKPDLFADVINKFMAHGKSMDMTQPEGEHSAHEG 184 Query: 316 MRGID 320 M G+D Sbjct: 185 MEGMD 189 |
>1cyx_A (A:) CYOA; electron transport; 2.30A {Escherichia coli}Length = 205 | Back alignment and structure |
---|
>2gsm_B (B:103-262) Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides}Length = 160 | Back alignment and structure |
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>3hb3_B (B:137-298) Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*Length = 162 | Back alignment and structure |
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>1v54_B (B:92-227) Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus}Length = 136 | Back alignment and structure |
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>1xme_B (B:55-168) Cytochrome C oxidase polypeptide II; cytochrome oxidase, heme, heme-AS, integral membrane protein, oxidoreductase; HET: BNG HEM HAS; 2.30A {Thermus thermophilus}Length = 114 | Back alignment and structure |
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>2cua_A (A:) Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus}Length = 135 | Back alignment and structure |
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>1qni_A (A:453-581) Nitrous-oxide reductase; oxidoreductase, denitrification, MAD, electron transfer; 2.40A {Pseudomonas nautica}Length = 129 | Back alignment and structure |
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>1fwx_A (A:45-81,A:463-595) Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site, oxidoreductase; 1.60A {Paracoccus denitrificans}Length = 170 | Back alignment and structure |
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Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 332 | ubiquinol oxidase, subunit II [Candidatus Liberibacter | ||
1cyx_A_ | 205 | CYOA; electron transport; 2.30A {Escherichia coli} | 100.0 | |
1fft_B_119-315 | 197 | Ubiquinol oxidase; electron transport, cytochrome | 100.0 | |
3hb3_B_137-298 | 162 | Cytochrome C oxidase subunit 2; electron transfer, | 100.0 | |
2gsm_B_103-262 | 160 | Cytochrome C oxidase subunit 2; transmembrane prot | 100.0 | |
1v54_B_92-227 | 136 | Cytochrome C oxidase polypeptide II; oxidoreductas | 100.0 | |
1xme_B_55-168 | 114 | Cytochrome C oxidase polypeptide II; cytochrome ox | 99.98 | |
2cua_A_ | 135 | Protein (CUA); CUA center, electron transport; 1.6 | 99.97 | |
1qni_A_453-581 | 129 | Nitrous-oxide reductase; oxidoreductase, denitrifi | 99.95 | |
1fwx_A_45-81_463-595 | 170 | Nitrous oxide reductase; beta-propeller domain, cu | 99.85 | |
1paz_A_ | 123 | Pseudoazurin precursor; electron transfer(cupropro | 98.65 | |
1pmy_A_ | 123 | Pseudoazurin; electron transfer(cuproprotein); 1.5 | 98.52 | |
3erx_A_ | 123 | Pseudoazurin; copper protein, high-resolution,, co | 98.41 | |
1id2_A_ | 106 | Amicyanin; beta barrel, type-1 blue copper protein | 97.7 | |
2ov0_A_ | 105 | Amicyanin; beta-sandwich, electron transport; 0.75 | 97.12 | |
2ux6_A_ | 122 | Pseudoazurin; type-1 copper, metal-binding, redox | 96.19 | |
1b3i_A_ | 97 | PETE protein, protein (plastocyanin); electron tra | 95.89 | |
2dv6_A_1-146 | 146 | Nitrite reductase; electron transfer, reduction, d | 95.79 | |
1sdd_B_188-336 | 149 | Coagulation factor V; copper-binding protein, cofa | 93.39 | |
1iby_A_ | 112 | Nitrosocyanin; RED copper, cupredoxin, beta hairpi | 99.94 | |
3ef4_A_ | 124 | Pseudoazurin, blue copper protein; electron transf | 98.19 | |
1bxv_A_ | 91 | Plastocyanin; copper protein, electron transfer; 1 | 97.18 | |
1iuz_A_ | 98 | Plastocyanin; electron transport; 1.60A {Ulva pert | 96.61 | |
3fsa_A_ | 125 | Azurin; copper, cupredoxin fold, metal-binding, pr | 96.36 | |
2aan_A_ | 139 | Auracyanin A; cupredoxin fold, electron transport; | 95.87 | |
3c75_A_ | 132 | Amicyanin; copper proteins, electron transfer comp | 95.55 | |
1cuo_A_ | 129 | Protein (azurin ISO-2); beta barrel, periplasmic, | 95.55 | |
1qhq_A_ | 140 | Protein (auracyanin); electron transfer, cupredoxi | 94.81 | |
1kdj_A_ | 102 | Plastocyanin; electron transfer, photosystem, PAI- | 94.78 | |
1byp_A_ | 99 | Protein (plastocyanin); electron transfer, photosy | 94.67 | |
1plc_A_ | 99 | Plastocyanin; electron transport; 1.33A {Populus n | 94.66 | |
2j5w_A_213-363 | 151 | Ceruloplasmin, ferroxidase; oxidoreductase, plasma | 92.05 | |
2plt_A_ | 98 | Plastocyanin; electron transport; 1.50A {Chlamydom | 91.93 | |
2gim_A_ | 106 | Plastocyanin; beta sheet, Cu, helix, electron tran | 91.69 | |
1mzy_A_160-333 | 174 | Copper-containing nitrite reductase; mutant M182T, | 91.48 | |
1mzy_A_1-159 | 159 | Copper-containing nitrite reductase; mutant M182T, | 91.26 | |
3cvb_A_ | 105 | Plastocyanin; cupredoxin, SELF assembly, copper, e | 90.36 | |
3hb3_B_1-136 | 136 | Cytochrome C oxidase subunit 2; electron transfer, | 99.39 |
>1cyx_A (A:) CYOA; electron transport; 2.30A {Escherichia coli} | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=414.41 Aligned_cols=201 Identities=38% Similarity=0.717 Sum_probs=190.5 Q ss_pred HHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCHHCCCHHHCC Q ss_conf 77513444200001244678888866899999843699996267877430689636982899998358101102201074 Q gi|254780474|r 117 THRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAG 196 (332) Q Consensus 117 ~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~ 196 (332) |+.|+|++|+ ..++++++|+|+|+||+|.|+||++++.++|+|+||+|+||+|+|||.|||||||||+|++ T Consensus 1 T~a~~~~~~~---------~~~~~~l~I~v~g~qW~W~f~Yp~~~~~~~n~l~iP~~~~V~~~ltS~DViHsF~iP~l~~ 71 (205) T 1cyx_A 1 THALEPSKPL---------AHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPVYFKVTSNSVMHSFFIPRLGS 71 (205) T ss_dssp -----------------------CCEEEEEEEETTEEEEEETTTTEEEESEEEEETTSCEEEEEEESSSCEEEEEGGGTE T ss_pred CCCCCCCCCC---------CCCCCCEEEEEEEEECEEEEEECCCCCCCCCEEEECCCCEEEEEEECCCCCHHHHHHHHHH T ss_conf 9778989988---------8899988999999944089880899964011388506976899997687411243432210 Q ss_pred EECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECC-HHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHCC Q ss_conf 031169851489999427748966613326576113658999708-899999999986072456-989999976102126 Q gi|254780474|r 197 QIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKS-EKGFEDWISKVKRQGTFL-NRQEYLLLKKPSERD 274 (332) Q Consensus 197 k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s-~~~f~~Wv~~~ka~~~~l-~~~~y~~l~~ps~~~ 274 (332) |+|+||||.|++||+++++|+|+|+|+||||.|||.|+|+|+|++ +++|++|++++|+.+..+ +.++|+.++.|++.+ T Consensus 72 k~daiPG~~~~~~~~~~~~G~y~g~Cae~CG~~Hs~M~~~v~vv~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (205) T 1cyx_A 72 QIYAMAGMQTRLHLIANEPGTYDGICAEICGPGHSGMKFKAIATPDRAAFDQWVAKAKQSPNTMSDMAAFEKLAAPSEYN 151 (205) T ss_dssp EEEECTTCCEEEEECCSSSEEEEEEECSCCSTTSTTCCEEEEEESSHHHHHHHHHHHHTCSCCBCSHHHHHHHHSCCSSC T ss_pred EECCCCCCCEEEEECCCCCCCEEEEEHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC T ss_conf 01006996047764047764306862112060223583699998999999999999763832354256899987776647 Q ss_pred CCEEECCCCCCHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCHHHCCCCHHHH Q ss_conf 3217204783542687315244488566021024666885234401100112 Q gi|254780474|r 275 SVRYFSPIEKGLYYSILNLCVHPGKICMDEMMRIDALGGGGMRGIDRHSLIY 326 (332) Q Consensus 275 ~~~~f~~~~~~lf~~i~~~~~~~~~~~~~~~m~~~~~~g~~~~~~~~~~~~~ 326 (332) +.+|++++.|+||+.+++++++.|+.+.+..+..++.++.+|+++|+...+. T Consensus 152 ~~~~~~~~~p~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~ 203 (205) T 1cyx_A 152 QVEYFSNVKPDLFADVINKFMAHGKSMDMTQPEGEHSAHEGMEGMDMSHAES 203 (205) T ss_dssp CCEEESCBCTTHHHHHHTTTC------------------------------- T ss_pred CCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 6126613581357789998753486655777412444468998736333334 |
>1fft_B (B:119-315) Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} | Back alignment and structure |
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>3hb3_B (B:137-298) Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B* | Back alignment and structure |
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>2gsm_B (B:103-262) Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} | Back alignment and structure |
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>1v54_B (B:92-227) Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} | Back alignment and structure |
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>1xme_B (B:55-168) Cytochrome C oxidase polypeptide II; cytochrome oxidase, heme, heme-AS, integral membrane protein, oxidoreductase; HET: BNG HEM HAS; 2.30A {Thermus thermophilus} | Back alignment and structure |
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>2cua_A (A:) Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} | Back alignment and structure |
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>1qni_A (A:453-581) Nitrous-oxide reductase; oxidoreductase, denitrification, MAD, electron transfer; 2.40A {Pseudomonas nautica} | Back alignment and structure |
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>1fwx_A (A:45-81,A:463-595) Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site, oxidoreductase; 1.60A {Paracoccus denitrificans} | Back alignment and structure |
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>1paz_A (A:) Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} | Back alignment and structure |
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>1pmy_A (A:) Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} | Back alignment and structure |
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>3erx_A (A:) Pseudoazurin; copper protein, high-resolution,, copper, electron transport, metal-binding, periplasm, transport; 1.25A {Paracoccus pantotrophus} PDB: 1adw_A | Back alignment and structure |
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>1id2_A (A:) Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} | Back alignment and structure |
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>2ov0_A (A:) Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} | Back alignment and structure |
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>2ux6_A (A:) Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A | Back alignment and structure |
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>1b3i_A (A:) PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} | Back alignment and structure |
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>2dv6_A (A:1-146) Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans} | Back alignment and structure |
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>1sdd_B (B:188-336) Coagulation factor V; copper-binding protein, cofactor, blood clotting; HET: NAG NDG; 2.80A {Bos taurus} | Back alignment and structure |
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>1iby_A (A:) Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} | Back alignment and structure |
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>3ef4_A (A:) Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} | Back alignment and structure |
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>1bxv_A (A:) Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus SP} | Back alignment and structure |
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>1iuz_A (A:) Plastocyanin; electron transport; 1.60A {Ulva pertusa} | Back alignment and structure |
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>3fsa_A (A:) Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} PDB: 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 2iwe_A* 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A 1e5z_A 1e5y_A 1e67_A ... | Back alignment and structure |
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>2aan_A (A:) Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus} | Back alignment and structure |
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>3c75_A (A:) Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
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>1cuo_A (A:) Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} | Back alignment and structure |
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>1qhq_A (A:) Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin- like, thermophIle; 1.55A {Chloroflexus aurantiacus} | Back alignment and structure |
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>1kdj_A (A:) Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} | Back alignment and structure |
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>1byp_A (A:) Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant; 1.75A {Silene pratensis} | Back alignment and structure |
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>1plc_A (A:) Plastocyanin; electron transport; 1.33A {Populus nigra} | Back alignment and structure |
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>2j5w_A (A:213-363) Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} | Back alignment and structure |
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>2plt_A (A:) Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} | Back alignment and structure |
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>2gim_A (A:) Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} | Back alignment and structure |
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>1mzy_A (A:160-333) Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron transfer, oxidoreductase; 1.46A {Rhodobacter sphaeroides} | Back alignment and structure |
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