254780474

254780474

ubiquinol oxidase, subunit II

GeneID in NCBI database:8209463Locus tag:CLIBASIA_01795
Protein GI in NCBI database:254780474Protein Accession:YP_003064887.1
Gene range:-(396737, 397735)Protein Length:332aa
Gene description:ubiquinol oxidase, subunit II
COG prediction:[C] Heme/copper-type cytochrome/quinol oxidases, subunit 2
KEGG prediction:cyoA; ubiquinol oxidase, subunit II; K02297 cytochrome o ubiquinol oxidase subunit II [EC:1.10.3.-]
SEED prediction:Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)
Pathway involved in KEGG:Oxidative phosphorylation [PATH:las00190]
Subsystem involved in SEED:Terminal cytochrome O ubiquinol oxidase
sequencesequence profile

Prediction of Local Sequence Properties

SourceSummaryResult
scaler
NCBI Databasesequence
PSIPREDsecondary structure
SSPROsecondary structure
DISEMBLcoil and loop
DISEMBLflexible loop
SEGlow complexity
DISOPREDdisordered
DISEMBLmissing residues
DISPROdisordered
TMHMM3 TM-Helix
TOPPRED4 TM-Helix
HMMTOP3 TM-Helix
MEMSAT1 TM-Helix
MEMSAT_SVMnone TM-Helix
PHOBIUS3 TM-Helix
SignalP_HMMno
SignalP_NNno
COILScoiled coil
70% MSAconservation map
90% MSAconservation map
  
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330--
MSDCLNWMGVSVGKSLKFFFLFFSSVMLSGFEFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAVITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKVKRQGTFLNRQEYLLLKKPSERDSVRYFSPIEKGLYYSILNLCVHPGKICMDEMMRIDALGGGGMRGIDRHSLIYDEGYRQ
cccccccccccccHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccEEEEEEEHHHHHHHHHHHEEEcccEEEccccHHHHHcccccccccccccEEEEEEEEEEEEEEEEcccccccccEEEEccccEEEEEEEEcccEEEEEcccccccEEEccccEEEEEEEEcccEEEEEEccccccccccccEEEEEEEcHHHHHHHHHHHHHccccccHHHHHHHHHHccccccEEcccccHHHHHHHHHHHHcccccccccccccccccccccccccccEEEccccccc
ccHHHHHccccccHHHHHHHHHHHHHHHcccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHccccccccccccEEEEEEEEccEEEEEEccccEEEEcEEEEEcccEEEEEEEEccccEEEEEHHHcEEEEEEccEcEEEEEEccccEEEEEEcccccccccccccEEEEEccHHHHHHHHHHHHHccccccHHHHHHHccccccccEEEEcccccHHHHHHHHHHcccccccccHHHcHHHccccccccccccccHccHHccc
msdclnwmgvsvgKSLKFFFLFFSSVMLSGFefivmdpygdiaLQQASLIRIAVALMLLIVVPVFFSILFFAWKYRstnkkarydpkwchstLLELFVWLVPLVIVGFLAVITwdathrmdpyaplerisesksiaknskPLVVEVVALDWKWLFLLPEQQVAIINELvvpidrplefRITASSVmnsfyipglAGQIYAMAGMETKLHAVMNkkgaysgfsanysgrgfshmrfkfygksekgFEDWISKVKRQGTFLNRQEYLLlkkpserdsvryfspiekGLYYSILNLCVHPGKICMDEMMRIDalggggmrgidrhsliydegyrq
MSDCLNWMGVSVGKSLKFFFLFFSSVMLSGFEFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAVITWDATHRMDPYAPLERisesksiaknskpLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKVKRqgtflnrqeylllkkpserdsvRYFSPIEKGLYYSILNLCVHPGKICMDEMMRIDALGGGGMRGIDRHSLIYDEGYRQ
MSDCLNWMGVsvgkslkffflffssvmlsgfEFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAVITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKVKRQGTFLNRQEYLLLKKPSERDSVRYFSPIEKGLYYSILNLCVHPGKICMDEMMRIDALGGGGMRGIDRHSLIYDEGYRQ
*********VSVGKSLKFFFLFFSSVMLSGFEFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRS***********CHSTLLELFVWLVPLVIVGFLAVITWDATHRMDPYAPLE************KPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWIS*****************************SPIEKGLYYSILNLCV*************************************
MSDCLNWMGVSVGKSLKFFFLFFSSVMLSGFEFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAVITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKVKRQGTFLNRQEYLLLKKPSERDSVRYFSPIEKGLYYSILNLCVHPGKICMDEMMRIDALGGGGMRGIDRHSLIYDEGYRQ
MSDCLNWMGVSVGKSLKFFFLFFSSVMLSGFEFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAVITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKVKRQGTFLNRQEYLLLKKPSERDSVRYFSPIEKGLYYSILNLCVHPGKICMDEMMRIDALGGG*M****RHS*********
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxhhhhhhhhhhhhhhhhhhhhxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSDCLNWMGVSVGKSLKFFFLFFSSVMLSGFEFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAVITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKVKRQGTFLNRQEYLLLKKPSERDSVRYFSPIEKGLYYSILNLCVHPGKICMDEMMRIDALGGGGMRGIDRHSLIYDEGYRQ
MSDCLNWMGVSVGKSLKFFFLFFSSVMLSGFEFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAVITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKVKRQGTFLNRQEYLLLKKPSERDSVRYFSPIEKGLYYSILNLCVHPGKICMDEMMRIDALGGGGMRGIDRHSLIYDEGYRQ
MSDCLNWMGVSVGKSLKFFFLFFSSVMLSGFEFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAVITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKVKRQGTFLNRQEYLLLKKPSERDSVRYFSPIEKGLYYSILNLCVHPGKICMDEMMRIDALGGGGMRGIDRHSLIYDEGYRQ

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

Original result of BLAST against C. L. asiaticus genome

IdentityAlignment graphLength Definition E-value
Target332 ubiquinol oxidase, subunit II [Candidatus Liberibacter
254780586101 BolA family protein [Candidatus Liberibacter asiat 0.016
>gi|254780586|ref|YP_003064999.1| BolA family protein [Candidatus Liberibacter asiaticus str. psy62] Length = 101 Back     alignment 
 Score = 32.0 bits (71), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 13/78 (16%)

Query: 211 VMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFEDWISKVKRQGTFLNRQEYLLLKKP 270
           V+N+   + G    ++G G +H+R K    +  G    ISK     TF +R+ Y LL K 
Sbjct: 27  VINESHLHVGHQPQFNGLGETHIRIKIVSPTFTG----ISK-----TFRHRKIYDLLHKE 77

Query: 271 SERD----SVRYFSPIEK 284
            + +    S+  FSP EK
Sbjct: 78  IKEELHALSIEAFSPDEK 95

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

Original result of PSI-BLAST first 2 iterations

IdentityAlignment graphLength Definition Round E-value
Target332 ubiquinol oxidase, subunit II [Candidatus Liberibacter
315122070329 ubiquinol oxidase, subunit II [Candidatus Liberibacter 1 1e-150
150376513392 ubiquinol oxidase subunit II [Sinorhizobium medicae WSM 1 1e-110
16265063386 putative cytochrome o ubiquinol oxidase chain II protei 1 1e-110
227820109385 cytochrome O ubiquinol oxidase subunit II [Sinorhizobiu 1 1e-108
116255242394 putative ubiquinol oxidase polypeptide II precursor [Rh 1 1e-107
190895347384 cytochrome O ubiquinol oxidase protein, subunit II [Rhi 1 1e-107
209546365390 ubiquinol oxidase subunit II [Rhizobium leguminosarum b 1 1e-106
241667021371 ubiquinol oxidase, subunit II [Rhizobium leguminosarum 1 1e-106
86360308371 cytochrome O ubiquinol oxidase, subunit II protein [Rhi 1 1e-106
222084387375 ubiquinol oxidase, subunit II [Agrobacterium radiobacte 1 1e-105
>gi|315122070|ref|YP_004062559.1| ubiquinol oxidase, subunit II [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 329 Back     alignment and organism information
 Score =  534 bits (1375), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 247/323 (76%), Positives = 289/323 (89%)

Query: 8   MGVSVGKSLKFFFLFFSSVMLSGFEFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFS 67
           M  ++ K++KF  LFFS V+LSGF+F+VM+PYGD+A QQA LI I+V+LMLLIVVPVFFS
Sbjct: 1   MMANMTKNMKFVALFFSIVILSGFDFVVMNPYGDVASQQAGLIYISVSLMLLIVVPVFFS 60

Query: 68  ILFFAWKYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAVITWDATHRMDPYAPLE 127
           ILFFAW+YR+TNKKA YDP W HST LE FVWL+PL+I+G LA ITWDATHRMDPYAPLE
Sbjct: 61  ILFFAWRYRATNKKAHYDPAWYHSTRLEFFVWLIPLIIIGCLAAITWDATHRMDPYAPLE 120

Query: 128 RISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMN 187
           RISE+KSI KNSK L+VEVVALDWKWLFL PEQ++A++NELVVP+DRPLEFRITASSVMN
Sbjct: 121 RISENKSIPKNSKSLIVEVVALDWKWLFLFPEQKIAVVNELVVPVDRPLEFRITASSVMN 180

Query: 188 SFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSEKGFED 247
           SFYIPGLAGQIYAM GMETKLHAVMN++GAYSGFSANYSG+GFSHMRF F+GKSEKGF+D
Sbjct: 181 SFYIPGLAGQIYAMPGMETKLHAVMNREGAYSGFSANYSGKGFSHMRFTFHGKSEKGFDD 240

Query: 248 WISKVKRQGTFLNRQEYLLLKKPSERDSVRYFSPIEKGLYYSILNLCVHPGKICMDEMMR 307
           W++KVKRQG  L+RQ YLLL+KPSE+D V YFS +E GLY +I+N CVHP KICMDE+MR
Sbjct: 241 WVAKVKRQGNCLDRQRYLLLEKPSEKDPVIYFSSVESGLYSAIMNFCVHPNKICMDEVMR 300

Query: 308 IDALGGGGMRGIDRHSLIYDEGY 330
           I+A+GGGG++GIDR  L+YDE Y
Sbjct: 301 INAMGGGGVKGIDRRFLVYDEDY 323



Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria
>gi|150376513|ref|YP_001313109.1| ubiquinol oxidase subunit II [Sinorhizobium medicae WSM419] Length = 392 Back     alignment and organism information
>gi|16265063|ref|NP_437855.1| putative cytochrome o ubiquinol oxidase chain II protein [Sinorhizobium meliloti 1021] Length = 386 Back     alignment and organism information
>gi|227820109|ref|YP_002824080.1| cytochrome O ubiquinol oxidase subunit II [Sinorhizobium fredii NGR234] Length = 385 Back     alignment and organism information
>gi|116255242|ref|YP_771075.1| putative ubiquinol oxidase polypeptide II precursor [Rhizobium leguminosarum bv. viciae 3841] Length = 394 Back     alignment and organism information
>gi|190895347|ref|YP_001985639.1| cytochrome O ubiquinol oxidase protein, subunit II [Rhizobium etli CIAT 652] Length = 384 Back     alignment and organism information
>gi|209546365|ref|YP_002278255.1| ubiquinol oxidase subunit II [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 390 Back     alignment and organism information
>gi|241667021|ref|YP_002985105.1| ubiquinol oxidase, subunit II [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 371 Back     alignment and organism information
>gi|86360308|ref|YP_472196.1| cytochrome O ubiquinol oxidase, subunit II protein [Rhizobium etli CFN 42] Length = 371 Back     alignment and organism information
>gi|222084387|ref|YP_002542916.1| ubiquinol oxidase, subunit II [Agrobacterium radiobacter K84] Length = 375 Back     alignment and organism information

Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Original result of RPS-BLASTagainst CDD database part II

IdentityAlignment graphLength Definition E-value
Target332 ubiquinol oxidase, subunit II [Candidatus Liberibacter
PRK10525315 PRK10525, PRK10525, cytochrome o ubiquinol oxidase subu 1e-86
TIGR01433226 TIGR01433, CyoA, cytochrome o ubiquinol oxidase subunit 3e-86
TIGR01432217 TIGR01432, QOXA, cytochrome aa3 quinol oxidase, subunit 7e-41
TIGR02866201 TIGR02866, CoxB, cytochrome c oxidase, subunit II 7e-25
COG1622247 COG1622, CyoA, Heme/copper-type cytochrome/quinol oxida 6e-62
pfam0648147 pfam06481, COX_ARM, COX Aromatic Rich Motif 1e-08
KOG4767231 KOG4767, KOG4767, KOG4767, Cytochrome c oxidase, subuni 8e-08
MTH00023240 MTH00023, COX2, cytochrome c oxidase subunit II; Valida 1e-04
MTH00051234 MTH00051, COX2, cytochrome c oxidase subunit II; Provis 4e-04
pfam00116120 pfam00116, COX2, Cytochrome C oxidase subunit II, perip 6e-04
MTH00027262 MTH00027, COX2, cytochrome c oxidase subunit II; Provis 8e-04
MTH00185230 MTH00185, COX2, cytochrome c oxidase subunit II; Provis 0.001
>gnl|CDD|182518 PRK10525, PRK10525, cytochrome o ubiquinol oxidase subunit II; Provisional Back     alignment and domain information
>gnl|CDD|130500 TIGR01433, CyoA, cytochrome o ubiquinol oxidase subunit II Back     alignment and domain information
>gnl|CDD|130499 TIGR01432, QOXA, cytochrome aa3 quinol oxidase, subunit II Back     alignment and domain information
>gnl|CDD|163049 TIGR02866, CoxB, cytochrome c oxidase, subunit II Back     alignment and domain information
>gnl|CDD|31809 COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|148220 pfam06481, COX_ARM, COX Aromatic Rich Motif Back     alignment and domain information
>gnl|CDD|39964 KOG4767, KOG4767, KOG4767, Cytochrome c oxidase, subunit II, and related proteins [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|177104 MTH00023, COX2, cytochrome c oxidase subunit II; Validated Back     alignment and domain information
>gnl|CDD|177126 MTH00051, COX2, cytochrome c oxidase subunit II; Provisional Back     alignment and domain information
>gnl|CDD|109183 pfam00116, COX2, Cytochrome C oxidase subunit II, periplasmic domain Back     alignment and domain information
>gnl|CDD|177106 MTH00027, COX2, cytochrome c oxidase subunit II; Provisional Back     alignment and domain information
>gnl|CDD|164736 MTH00185, COX2, cytochrome c oxidase subunit II; Provisional Back     alignment and domain information

Conserved Domains in CDD Database Detected by HHsearch

Original result of HHsearch against CDD database

IdentityAlignment graphLength Definition Probability
Target 332 ubiquinol oxidase, subunit II [Candidatus Liberibacter
PRK10525305 cytochrome o ubiquinol oxidase subunit II; Provisional 100.0
TIGR01433228 CyoA ubiquinol oxidase, subunit II; InterPro: IPR006333 100.0
TIGR02866249 CoxB cytochrome c oxidase, subunit II; InterPro: IPR014 100.0
TIGR01432229 QOXA cytochrome aa3 quinol oxidase, subunit II; InterPr 100.0
MTH00140227 COX2 cytochrome c oxidase subunit II; Provisional 100.0
MTH00129230 COX2 cytochrome c oxidase subunit II; Provisional 100.0
MTH00038229 COX2 cytochrome c oxidase subunit II; Provisional 100.0
MTH00154226 COX2 cytochrome c oxidase subunit II; Provisional 100.0
MTH00185229 COX2 cytochrome c oxidase subunit II; Provisional 100.0
MTH00051247 COX2 cytochrome c oxidase subunit II; Provisional 100.0
MTH00117227 COX2 cytochrome c oxidase subunit II; Provisional 100.0
MTH00139223 COX2 cytochrome c oxidase subunit II; Provisional 100.0
MTH00023247 COX2 cytochrome c oxidase subunit II; Validated 100.0
MTH00168225 COX2 cytochrome c oxidase subunit II; Provisional 100.0
MTH00076228 COX2 cytochrome c oxidase subunit II; Provisional 100.0
MTH00098227 COX2 cytochrome c oxidase subunit II; Validated 100.0
MTH00008228 COX2 cytochrome c oxidase subunit II; Validated 100.0
MTH00027249 COX2 cytochrome c oxidase subunit II; Provisional 100.0
MTH00080231 COX2 cytochrome c oxidase subunit II; Provisional 100.0
KOG4767231 consensus 100.0
COG1622247 CyoA Heme/copper-type cytochrome/quinol oxidases, subun 100.0
MTH00047193 COX2 cytochrome c oxidase subunit II; Provisional 100.0
pfam00116120 COX2 Cytochrome C oxidase subunit II, periplasmic domai 100.0
PTZ00047163 cytochrome C oxidase subunit II; Provisional 100.0
PRK02888637 nitrous-oxide reductase; Validated 98.41
TIGR03096135 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as describ 97.28
COG4263637 NosZ Nitrous oxide reductase [Energy production and con 96.28
pfam0648147 COX_ARM COX Aromatic Rich Motif. COX2 (Cytochrome O ubi 98.97
pfam0279083 COX2_TM Cytochrome C oxidase subunit II, transmembrane 98.54
PRK10263 1355 DNA translocase FtsK; Provisional 93.15
TIGR01477395 RIFIN variant surface antigen, rifin family; InterPro: 92.87
PTZ00042304 stevor; Provisional 92.27
pfam02009289 Rifin_STEVOR Rifin/stevor family. Several multicopy gen 91.35
PTZ00046348 rifin; Provisional 90.25
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional Back     alignment and domain information
>TIGR01433 CyoA ubiquinol oxidase, subunit II; InterPro: IPR006333 Members of this domain catalyze the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water Back     alignment and domain information
>TIGR02866 CoxB cytochrome c oxidase, subunit II; InterPro: IPR014222 This entry contains subunit II (CoxB) of cytochrome c oxidase Back     alignment and domain information
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II; InterPro: IPR006332 Members of this family catalyze the oxidation of quinol with the concomitant reduction of molecular oxygen to water Back     alignment and domain information
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional Back     alignment and domain information
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional Back     alignment and domain information
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional Back     alignment and domain information
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional Back     alignment and domain information
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional Back     alignment and domain information
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional Back     alignment and domain information
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional Back     alignment and domain information
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional Back     alignment and domain information
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated Back     alignment and domain information
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional Back     alignment and domain information
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional Back     alignment and domain information
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated Back     alignment and domain information
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated Back     alignment and domain information
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional Back     alignment and domain information
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional Back     alignment and domain information
>KOG4767 consensus Back     alignment and domain information
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion] Back     alignment and domain information
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional Back     alignment and domain information
>pfam00116 COX2 Cytochrome C oxidase subunit II, periplasmic domain Back     alignment and domain information
>PTZ00047 cytochrome C oxidase subunit II; Provisional Back     alignment and domain information
>PRK02888 nitrous-oxide reductase; Validated Back     alignment and domain information
>TIGR03096 nitroso_cyanin nitrosocyanin Back     alignment and domain information
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion] Back     alignment and domain information
>pfam06481 COX_ARM COX Aromatic Rich Motif Back     alignment and domain information
>pfam02790 COX2_TM Cytochrome C oxidase subunit II, transmembrane domain Back     alignment and domain information
>PRK10263 DNA translocase FtsK; Provisional Back     alignment and domain information
>TIGR01477 RIFIN variant surface antigen, rifin family; InterPro: IPR006373 Malaria is still a major cause of mortality in many areas of the world Back     alignment and domain information
>PTZ00042 stevor; Provisional Back     alignment and domain information
>pfam02009 Rifin_STEVOR Rifin/stevor family Back     alignment and domain information
>PTZ00046 rifin; Provisional Back     alignment and domain information

Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

Original result of PSI-BLAST

IdentityAlignment graphLength Definition E-value
Target332 ubiquinol oxidase, subunit II [Candidatus Liberibacter
1fft_B315 The Structure Of Ubiquinol Oxidase From Escherichia 9e-86
1cyx_A205 Quinol Oxidase (Periplasmic Fragment Of Subunit Ii 2e-55
1cyw_A205 Quinol Oxidase (Periplasmic Fragment Of Subunit Ii) 4e-51
1m56_B264 Structure Of Cytochrome C Oxidase From Rhodobactor 4e-43
2gsm_B262 Catalytic Core (Subunits I And Ii) Of Cytochrome C 5e-42
3om3_B256 Catalytic Core Subunits (I And Ii) Of Cytochrome C 1e-41
1ar1_B298 Structure At 2.7 Angstrom Resolution Of The Paracoc 2e-41
1qle_B252 Cryo-Structure Of The Paracoccus Denitrificans Four 3e-41
gi|11514518|pdb|1FFT|B Chain B, The Structure Of Ubiquinol Oxidase From Escherichia Coli Length = 315 Back     alignment and structure 
 Score =  321 bits (823), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 130/310 (41%), Positives = 189/310 (60%), Gaps = 11/310 (3%)

Query: 14  KSLKFFFLFFSSVMLSGFEFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAW 73
           KSL +  LF  +V+LSG    ++DP G I L+Q SLI  A  LML++V+P     + FAW
Sbjct: 8   KSLGWLSLFAGTVLLSGCNSALLDPKGQIGLEQRSLILTAFGLMLIVVIPAILMAVGFAW 67

Query: 74  KYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAVITWDATHRMDPYAPLERISESK 133
           KYR++NK A+Y P W HS  +E  VW VP++I+ FLAV+TW  TH ++P  PL       
Sbjct: 68  KYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIFLAVLTWKTTHALEPSKPLAH----- 122

Query: 134 SIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPG 193
               + KP+ +EVV++DWKW F+ PEQ +A +NE+  P + P+ F++T++SVMNSF+IP 
Sbjct: 123 ----DEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPVYFKVTSNSVMNSFFIPR 178

Query: 194 LAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKSE-KGFEDWISKV 252
           L  QIYAMAGM+T+LH + N+ G Y G SA+YSG GFS M+FK     +   F+ W++K 
Sbjct: 179 LGSQIYAMAGMQTRLHLIANEPGTYDGISASYSGPGFSGMKFKAIATPDRAAFDQWVAKA 238

Query: 253 KRQGTFL-NRQEYLLLKKPSERDSVRYFSPIEKGLYYSILNLCVHPGKICMDEMMRIDAL 311
           K+    + +   +  L  PSE + V YFS ++  L+  ++N  +  GK         +  
Sbjct: 239 KQSPNTMSDMAAFEKLAAPSEYNQVEYFSNVKPDLFADVINKFMAHGKSMDMTQPEGEHS 298

Query: 312 GGGGMRGIDR 321
              GM G+D 
Sbjct: 299 AHEGMEGMDM 308
>gi|157830777|pdb|1CYX|A Chain A, Quinol Oxidase (Periplasmic Fragment Of Subunit Ii With Engineered Cu-A Binding Site)(Cyoa) Length = 205 Back     alignment and structure
>gi|157830776|pdb|1CYW|A Chain A, Quinol Oxidase (Periplasmic Fragment Of Subunit Ii) (Cyoa) Length = 205 Back     alignment and structure
>gi|23200455|pdb|1M56|B Chain B, Structure Of Cytochrome C Oxidase From Rhodobactor Sphaeroides (Wild Type) Length = 264 Back     alignment and structure
>gi|118137842|pdb|2GSM|B Chain B, Catalytic Core (Subunits I And Ii) Of Cytochrome C Oxidase From Rhodobacter Sphaeroides Length = 262 Back     alignment and structure
>gi|321159890|pdb|3OM3|B Chain B, Catalytic Core Subunits (I And Ii) Of Cytochrome C Oxidase From Rhodobacter Sphaeroides With K362m Mutation In The Reduced State Length = 256 Back     alignment and structure
gi|2914142|pdb|1AR1|B Chain B, Structure At 2.7 Angstrom Resolution Of The Paracoccus Denitrificans Two-Subunit Cytochrome C Oxidase Complexed With An Antibody Fv Fragment Length = 298 Back     alignment and structure
>gi|6730477|pdb|1QLE|B Chain B, Cryo-Structure Of The Paracoccus Denitrificans Four-Subunit Cytochrome C Oxidase In The Completely Oxidized State Complexed With An Antibody Fv Fragment Length = 252 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

IdentityAlignment graphLength Definition E-value
Target332 ubiquinol oxidase, subunit II [Candidatus Liberibacter
1fft_B315 Ubiquinol oxidase; electron transport, cytochrome oxida 5e-81
1cyx_A205 CYOA; electron transport; 2.30A {Escherichia coli} SCOP 1e-41
3hb3_B298 Cytochrome C oxidase subunit 2; electron transfer, prot 6e-29
2gsm_B262 Cytochrome C oxidase subunit 2; transmembrane protein c 3e-23
1v54_B227 Cytochrome C oxidase polypeptide II; oxidoreductase; HE 8e-19
1xme_B168 Cytochrome C oxidase polypeptide II; cytochrome oxidase 4e-17
2cua_A135 Protein (CUA); CUA center, electron transport; 1.60A {T 5e-13
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1 Length = 315 Back     alignment and structure
 Score =  296 bits (759), Expect = 5e-81
 Identities = 132/309 (42%), Positives = 189/309 (61%), Gaps = 11/309 (3%)

Query: 14  KSLKFFFLFFSSVMLSGFEFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAW 73
           KSL +  LF  +V+LSG    ++DP G I L+Q SLI  A  LML++V+P     + FAW
Sbjct: 8   KSLGWLSLFAGTVLLSGCNSALLDPKGQIGLEQRSLILTAFGLMLIVVIPAILMAVGFAW 67

Query: 74  KYRSTNKKARYDPKWCHSTLLELFVWLVPLVIVGFLAVITWDATHRMDPYAPLERISESK 133
           KYR++NK A+Y P W HS  +E  VW VP++I+ FLAV+TW  TH ++P  PL       
Sbjct: 68  KYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIFLAVLTWKTTHALEPSKPL------- 120

Query: 134 SIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPG 193
             A + KP+ +EVV++DWKW F+ PEQ +A +NE+  P + P+ F++T++SVMNSF+IP 
Sbjct: 121 --AHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPVYFKVTSNSVMNSFFIPR 178

Query: 194 LAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKS-EKGFEDWISKV 252
           L  QIYAMAGM+T+LH + N+ G Y G SA+YSG GFS M+FK         F+ W++K 
Sbjct: 179 LGSQIYAMAGMQTRLHLIANEPGTYDGISASYSGPGFSGMKFKAIATPDRAAFDQWVAKA 238

Query: 253 KRQG-TFLNRQEYLLLKKPSERDSVRYFSPIEKGLYYSILNLCVHPGKICMDEMMRIDAL 311
           K+   T  +   +  L  PSE + V YFS ++  L+  ++N  +  GK         +  
Sbjct: 239 KQSPNTMSDMAAFEKLAAPSEYNQVEYFSNVKPDLFADVINKFMAHGKSMDMTQPEGEHS 298

Query: 312 GGGGMRGID 320
              GM G+D
Sbjct: 299 AHEGMEGMD 307
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A Length = 205 Back     alignment and structure
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B* Length = 298 Back     alignment and structure
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 1m56_B* 1m57_B* Length = 262 Back     alignment and structure
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2zxw_B* Length = 227 Back     alignment and structure
>1xme_B Cytochrome C oxidase polypeptide II; cytochrome oxidase, heme, heme-AS, integral membrane protein, oxidoreductase; HET: BNG HEM HAS; 2.30A {Thermus thermophilus} SCOP: b.6.1.2 f.17.2.1 PDB: 1ehk_B* 2qpd_B* 2qpe_B* 3bvd_B* 3eh5_B* 3eh3_B* 3eh4_B* Length = 168 Back     alignment and structure
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B* Length = 135 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by HHsearch

Original result of HHsearch against PDB70 database

IdentityAlignment graphLength Definition Probability
Target332 ubiquinol oxidase, subunit II [Candidatus Liberibacter
1fft_B315 Ubiquinol oxidase; electron transport, cytochrome oxida 100.0
3hb3_B298 Cytochrome C oxidase subunit 2; electron transfer, prot 100.0
2gsm_B262 Cytochrome C oxidase subunit 2; transmembrane protein c 100.0
1v54_B227 Cytochrome C oxidase polypeptide II; oxidoreductase; HE 100.0
1cyx_A205 CYOA; electron transport; 2.30A {Escherichia coli} SCOP 100.0
1xme_B168 Cytochrome C oxidase polypeptide II; cytochrome oxidase 100.0
2cua_A135 Protein (CUA); CUA center, electron transport; 1.60A {T 99.92
1fwx_A595 Nitrous oxide reductase; beta-propeller domain, cupredo 98.92
1qni_A581 Nitrous-oxide reductase; oxidoreductase, denitrificatio 98.65
1qhq_A140 Protein (auracyanin); electron transfer, cupredoxin, bl 97.19
2aan_A139 Auracyanin A; cupredoxin fold, electron transport; 1.85 97.13
3fsa_A125 Azurin; copper, cupredoxin fold, metal-binding, protein 96.58
2ov0_A105 Amicyanin; beta-sandwich, electron transport; 0.75A {Pa 95.57
1cuo_A129 Protein (azurin ISO-2); beta barrel, periplasmic, elect 95.42
2iaa_C128 Azurin; quinoprotein, tryptophan tryptophylquinone, cup 94.97
1nwp_A128 Azurin; electron transport, cupredoxin, electron transf 94.85
2ccw_A129 Azurin II, AZN-2; electron transport (cuproprotein), al 94.44
1oe1_A336 Dissimilatory copper-containing nitrite reductase; deni 91.5
3cvb_A105 Plastocyanin; cupredoxin, SELF assembly, copper, electr 90.49
1iby_A112 Nitrosocyanin; RED copper, cupredoxin, beta hairpin, me 99.34
3c75_A132 Amicyanin; copper proteins, electron transfer complex, 96.89
2dv6_A 447 Nitrite reductase; electron transfer, reduction, denitr 96.7
2cal_A154 Rusticyanin; iron respiratory electron transport chain, 96.12
1id2_A106 Amicyanin; beta barrel, type-1 blue copper protein, ele 95.18
1pcs_A98 Plastocyanin; electron transport; 2.15A {Synechocystis 93.31
3gdc_A288 Multicopper oxidase; beta sandwich, plasmid, oxidoreduc 92.79
2ux6_A122 Pseudoazurin; type-1 copper, metal-binding, redox poten 92.4
1bxv_A91 Plastocyanin; copper protein, electron transfer; 1.80A 92.28
1mzy_A333 Copper-containing nitrite reductase; mutant M182T, gati 91.56
1kdj_A102 Plastocyanin; electron transfer, photosystem, PAI-PAI s 91.46
3erx_A123 Pseudoazurin; copper protein, high-resolution, C electr 90.59
3ef4_A124 Pseudoazurin, blue copper protein; electron transfer, e 90.58
1byp_A99 Protein (plastocyanin); electron transfer, photosynthes 90.39
2zoo_A442 Probable nitrite reductase; electron transfer, electron 96.12
1pmy_A123 Pseudoazurin; electron transfer(cuproprotein); 1.50A {M 93.63
1paz_A123 Pseudoazurin precursor; electron transfer(cuproprotein) 93.55
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1 Back     alignment and structure
Probab=100.00  E-value=0  Score=665.20  Aligned_cols=306  Identities=43%  Similarity=0.802  Sum_probs=291.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             35668899999999998741364326898989999999999999999999999999999998853046777777875345
Q gi|254780474|r   11 SVGKSLKFFFLFFSSVMLSGFEFIVMDPYGDIALQQASLIRIAVALMLLIVVPVFFSILFFAWKYRSTNKKARYDPKWCH   90 (332)
Q Consensus        11 ~~~k~l~~~~l~~~~~lLsGC~~~~l~P~G~ia~~~~~L~~~~~~l~liV~v~V~~l~~~~~~kyR~~~~~a~~~p~~~h   90 (332)
                      +..|.++++++++++++|+||+.++|+|+|++|+++++|+++++++|++|+++|+++++||+||||+++++++|.|+++|
T Consensus         5 ~~~r~l~~l~ll~~~~lLsGC~~~~l~P~G~~a~~~~~L~~~~~~l~l~V~v~v~~~~~~~~~ryR~~~~~~~~~p~~~~   84 (315)
T 1fft_B            5 KYNKSLGWLSLFAGTVLLSGCNSALLDPKGQIGLEQRSLILTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSPNWSH   84 (315)
T ss_dssp             ----------------------CCCSSCCSCCHHHHHHHHHHHHHHTTTTTTHHHHHHHTTTTTTTTSTTTCSSCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCC
T ss_conf             36789999999999999965765445999978999999999999997767767666430034678843677777986355


Q ss_pred             CCEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCEEEEE
Q ss_conf             66125530227899999999999988775134442000012446788888668999998436999962678774306896
Q gi|254780474|r   91 STLLELFVWLVPLVIVGFLAVITWDATHRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVV  170 (332)
Q Consensus        91 s~~lEi~wt~iP~iIi~~L~~~t~~~~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~giatvneL~l  170 (332)
                      |+++|++||++|++|+++|++++|++++.+|+++|.         +.+++|++|+|+|+||+|+|+||++|++|+|||++
T Consensus        85 ~~~lE~i~~~ip~iivi~l~~~~~~~~~~~~~~~~~---------~~~~~~l~I~V~g~qW~W~f~Yp~~~~~t~neL~i  155 (315)
T 1fft_B           85 SNKVEAVVWTVPILIIIFLAVLTWKTTHALEPSKPL---------AHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAF  155 (315)
T ss_dssp             CSHHHHHTTHHHHHHHHHHHHHHHHHSCTTCCSCCC---------CCCSCCCEEEEECCTTSCEEECTTTCCEEESBCCC
T ss_pred             CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---------CCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCC
T ss_conf             745521567766899899999998888865124666---------67899849999866889999735666566765025


Q ss_pred             ECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECC-HHHHHHHH
Q ss_conf             36982899998358101102201074031169851489999427748966613326576113658999708-89999999
Q gi|254780474|r  171 PIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKS-EKGFEDWI  249 (332)
Q Consensus       171 Pv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s-~~~f~~Wv  249 (332)
                      |+|+||+|+|||+|||||||||+||+|+|+||||+|++||+|+++|+|+|+||||||.|||.|+|+|+|++ ++||++|+
T Consensus       156 P~~~pV~~~ltS~DViHsF~VP~l~~k~daiPG~~~~~~~~a~~~G~y~g~Cae~CG~gHs~M~~~v~vv~~~~~f~~Wv  235 (315)
T 1fft_B          156 PANTPVYFKVTSNSVMNSFFIPRLGSQIYAMAGMQTRLHLIANEPGTYDGISASYSGPGFSGMKFKAIATPDRAAFDQWV  235 (315)
T ss_dssp             CSSSEEEEEECBSSSCEEEEEGGGTEEEEECBTSCEEEEEECCSCBCCEEBCCSCCSTTTTTCCEECCBCSSTHHHHHHH
T ss_pred             CCCCEEEEEEECCCCCCEEEECCCCCEEECCCCCEEEEEEECCCCEEEEEEEHHHCCCCCCCCEEEEEEECCHHHHHHHH
T ss_conf             65530189997487112011320085663289861899996189548999805550711335653899987889999999


Q ss_pred             HHHHCCCCCC-CHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCHHHCCCCHHH
Q ss_conf             9986072456-989999976102126321720478354268731524448856602102466688523440110011
Q gi|254780474|r  250 SKVKRQGTFL-NRQEYLLLKKPSERDSVRYFSPIEKGLYYSILNLCVHPGKICMDEMMRIDALGGGGMRGIDRHSLI  325 (332)
Q Consensus       250 ~~~ka~~~~l-~~~~y~~l~~ps~~~~~~~f~~~~~~lf~~i~~~~~~~~~~~~~~~m~~~~~~g~~~~~~~~~~~~  325 (332)
                      +++|+++.++ +.++|++|++|++.++++|||+++|+||+.|+++|+++|+.+...++..++.+++||+++|+...+
T Consensus       236 ~~~k~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~p~Lf~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~g~dm~~~~  312 (315)
T 1fft_B          236 AKAKQSPNTMSDMAAFEKLAAPSEYNQVEYFSNVKPDLFADVINKFMAHGKSMDMTQPEGEHSAHEGMEGMDMSHAE  312 (315)
T ss_dssp             HHHHHCSCCBCCHHHHHHHTSSCSSCCSEEESCBCTTHHHHHHHHTTC-----------------------------
T ss_pred             HHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             98661875566899999986775668853004779732889999873178877877644453447899987777654
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B* Back     alignment and structure
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 1m56_B* 1m57_B* Back     alignment and structure
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* 3ag2_B* 3ag3_B* ... Back     alignment and structure
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A Back     alignment and structure
>1xme_B Cytochrome C oxidase polypeptide II; cytochrome oxidase, heme, heme-AS, integral membrane protein, oxidoreductase; HET: BNG HEM HAS; 2.30A {Thermus thermophilus} SCOP: b.6.1.2 f.17.2.1 PDB: 1ehk_B* 2qpd_B* 2qpe_B* 3bvd_B* 3eh5_B* 3eh3_B* 3eh4_B* Back     alignment and structure
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B* Back     alignment and structure
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site, oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A Back     alignment and structure
>1qni_A Nitrous-oxide reductase; oxidoreductase, denitrification, MAD, electron transfer; 2.40A {Pseudomonas nautica} SCOP: b.6.1.4 b.69.3.1 Back     alignment and structure
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin- like, thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A Back     alignment and structure
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus} Back     alignment and structure
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} PDB: 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 2iwe_A* 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A 1e5z_A 1e5y_A 1e67_A ... Back     alignment and structure
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ... Back     alignment and structure
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A Back     alignment and structure
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C* Back     alignment and structure
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A Back     alignment and structure
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A Back     alignment and structure
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* 1gs7_A* 2bp0_B 1gs6_X 2bo0_A* ... Back     alignment and structure
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A Back     alignment and structure
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A Back     alignment and structure
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans} Back     alignment and structure
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue copper protein, copper, electron transport, metal- binding, periplasmic; 1.1A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A Back     alignment and structure
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1 Back     alignment and structure
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A Back     alignment and structure
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP} Back     alignment and structure
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A Back     alignment and structure
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus pcc 7942} SCOP: b.6.1.1 PDB: 1bxu_A Back     alignment and structure
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron transfer, oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A Back     alignment and structure
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A Back     alignment and structure
>3erx_A Pseudoazurin; copper protein, high-resolution, C electron transport, metal-binding, periplasm, transport; 1.25A {Paracoccus pantotrophus} PDB: 1adw_A Back     alignment and structure
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} Back     alignment and structure
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A Back     alignment and structure
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, metal-binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis TAC125} Back     alignment and structure
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1 Back     alignment and structure
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A* Back     alignment and structure

Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

IdentityAlignment graphLength Definition E-value
Target 332 ubiquinol oxidase, subunit II [Candidatus Liberibacter
d1cyxa_158 b.6.1.2 (A:) Quinol oxidase (CyoA) {Escherichia coli [T 1e-31
d1fftb291 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, sub 3e-23
d3dtub1152 b.6.1.2 (B:130-281) Cytochrome c oxidase {Rhodobacter s 1e-17
d3ehbb1145 b.6.1.2 (B:108-252) Cytochrome c oxidase {Paracoccus de 3e-17
d1v54b1137 b.6.1.2 (B:91-227) Cytochrome c oxidase {Cow (Bos tauru 2e-16
d2cuaa_122 b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus 5e-14
>d1cyxa_ b.6.1.2 (A:) Quinol oxidase (CyoA) {Escherichia coli [TaxId: 562]} Length = 158 Back     information, alignment and structure

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Periplasmic domain of cytochrome c oxidase subunit II
domain: Quinol oxidase (CyoA)
species: Escherichia coli [TaxId: 562]

 Score =  130 bits (328), Expect = 1e-31
 Identities = 65/155 (41%), Positives = 98/155 (63%), Gaps = 2/155 (1%)

Query: 140 KPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIY 199
           KP+ +EVV++DWKW F+ PEQ +A +NE+  P + P+ F++T++SVM+SF+IP L  QIY
Sbjct: 1   KPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPVYFKVTSNSVMHSFFIPRLGSQIY 60

Query: 200 AMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYG-KSEKGFEDWISKVKRQG-T 257
           AMAGM+T+LH + N+ G Y G  A   G G S M+FK         F+ W++K K+   T
Sbjct: 61  AMAGMQTRLHLIANEPGTYDGICAEICGPGHSGMKFKAIATPDRAAFDQWVAKAKQSPNT 120

Query: 258 FLNRQEYLLLKKPSERDSVRYFSPIEKGLYYSILN 292
             +   +  L  PSE + V YFS ++  L+  ++N
Sbjct: 121 MSDMAAFEKLAAPSEYNQVEYFSNVKPDLFADVIN 155
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]} Length = 91 Back     information, alignment and structure
>d3dtub1 b.6.1.2 (B:130-281) Cytochrome c oxidase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 152 Back     information, alignment and structure
>d3ehbb1 b.6.1.2 (B:108-252) Cytochrome c oxidase {Paracoccus denitrificans [TaxId: 266]} Length = 145 Back     information, alignment and structure
>d1v54b1 b.6.1.2 (B:91-227) Cytochrome c oxidase {Cow (Bos taurus) [TaxId: 9913]} Length = 137 Back     information, alignment and structure
>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]} Length = 122 Back     information, alignment and structure

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

IdentityAlignment graphLength Definition Probability
Target332 ubiquinol oxidase, subunit II [Candidatus Liberibacter
d1cyxa_158 Quinol oxidase (CyoA) {Escherichia coli [TaxId: 562]} 100.0
d3ehbb1145 Cytochrome c oxidase {Paracoccus denitrificans [TaxId: 100.0
d1v54b1137 Cytochrome c oxidase {Cow (Bos taurus) [TaxId: 9913]} 100.0
d3dtub1152 Cytochrome c oxidase {Rhodobacter sphaeroides [TaxId: 1 100.0
d2cuaa_122 Cytochrome c oxidase {Thermus thermophilus, ba3 type [T 99.93
d1qnia1131 Nitrous oxide reductase, C-terminal domain {Pseudomonas 99.83
d1fwxa1132 Nitrous oxide reductase, C-terminal domain {Paracoccus 99.7
d1qhqa_139 Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]} 97.33
d2ccwa1129 Azurin {Alcaligenes xylosoxidans, NCIMB (11015), differ 96.07
d1cuoa_129 Azurin {Methylomonas sp. j [TaxId: 32038]} 95.52
d1jzga_128 Azurin {Pseudomonas aeruginosa [TaxId: 287]} 95.14
d1nwpa_128 Azurin {Pseudomonas putida [TaxId: 303]} 94.69
d2ov0a1105 Amicyanin {Paracoccus denitrificans [TaxId: 266]} 94.33
d1fftb291 Cytochrome O ubiquinol oxidase, subunit II {Escherichia 99.81
d3dtub2100 Bacterial aa3 type cytochrome c oxidase subunit II {Rho 99.48
d3ehbb2107 Bacterial aa3 type cytochrome c oxidase subunit II {Par 99.42
d1v54b290 Mitochondrial cytochrome c oxidase, subunit II {Cow (Bo 98.77
d1ibya_112 Red copper protein nitrosocyanin {Nitrosomonas europaea 99.42
d1e30a_153 Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920]} 95.88
d1id2a_106 Amicyanin {Paracoccus versutus (Thiobacillus versutus) 95.09
d2jxma197 Plastocyanin {Photosynthetic prokaryote (Prochlorothrix 94.43
d1bqka_124 Pseudoazurin {Achromobacter cycloclastes [TaxId: 223]} 94.42
d1pcsa_98 Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 6 92.6
d1bypa_99 Plastocyanin {White campion (Silene pratensis) [TaxId: 92.29
d1adwa_123 Pseudoazurin {Thiosphaera pantotropha [TaxId: 82367]} 92.2
d2q5ba1105 Plastocyanin {Cyanobacterium (Phormidium laminosum) [Ta 92.12
d1bxua_91 Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 7 91.44
d1kcwa2146 Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} 91.3
d1kdja_102 Plastocyanin {Fern (Adiantum capillus-veneris) [TaxId: 90.23
d1pmya_123 Pseudoazurin {Methylobacterium extorquens, strain am1 [ 92.61
>d1cyxa_ b.6.1.2 (A:) Quinol oxidase (CyoA) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Periplasmic domain of cytochrome c oxidase subunit II
domain: Quinol oxidase (CyoA)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=388.84  Aligned_cols=156  Identities=41%  Similarity=0.832  Sum_probs=151.6

Q ss_pred             CCEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCHHCCCHHHCCEECCCCCCCEEEEEEECCCEEEE
Q ss_conf             86689999984369999626787743068963698289999835810110220107403116985148999942774896
Q gi|254780474|r  140 KPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQIYAMAGMETKLHAVMNKKGAYS  219 (332)
Q Consensus       140 ~~l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~k~daiPG~~t~l~~~a~~~G~y~  219 (332)
                      ||++|+|+|+||+|+|+||++|+.|+|||++|+|+||+|.|||.|||||||||+|++|+|+||||.|++||+++++|+|+
T Consensus         1 KP~~I~V~g~QW~W~f~Yp~~~i~t~n~l~lP~g~pV~~~ltS~DViHsF~vP~l~~k~daiPG~~~~~~~~~~~~G~y~   80 (158)
T d1cyxa_           1 KPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPVYFKVTSNSVMHSFFIPRLGSQIYAMAGMQTRLHLIANEPGTYD   80 (158)
T ss_dssp             CCEEEEEEEETTEEEEEETTTTEEEESEEEEETTSCEEEEEEESSSCEEEEEGGGTEEEEECTTCCEEEEECCSSSEEEE
T ss_pred             CCEEEEEEEEECEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCCHHHHHHHCCEEECCCCCCEEEEEEEECCCCCEE
T ss_conf             98899999995408988089996512128960797689999759841045664100012027986055665505887388


Q ss_pred             EECCCCCCCCCCCCEEEEEEC-CHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHCCCC
Q ss_conf             661332657611365899970-8899999999986072456-989999976102126321720478354268731524
Q gi|254780474|r  220 GFSANYSGRGFSHMRFKFYGK-SEKGFEDWISKVKRQGTFL-NRQEYLLLKKPSERDSVRYFSPIEKGLYYSILNLCV  295 (332)
Q Consensus       220 G~cae~cG~ghs~M~f~v~v~-s~~~f~~Wv~~~ka~~~~l-~~~~y~~l~~ps~~~~~~~f~~~~~~lf~~i~~~~~  295 (332)
                      |+|+||||.||+.|+|+++++ ++++|++|++++|+++.++ +.++|++|++|++.+++++|+++.|+||+.|+++||
T Consensus        81 g~Cae~CG~gH~~M~~~v~vv~~~~~f~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Lf~~vv~~~~  158 (158)
T d1cyxa_          81 GICAEICGPGHSGMKFKAIATPDRAAFDQWVAKAKQSPNTMSDMAAFEKLAAPSEYNQVEYFSNVKPDLFADVINKFM  158 (158)
T ss_dssp             EEECSCCSTTSTTCCEEEEEESSHHHHHHHHHHHHTCSCCBCSHHHHHHHHSCCSSCCCEEESCBCTTHHHHHHTTTC
T ss_pred             EECHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHCC
T ss_conf             871432071224583699997999999999998673854454256799986786778815642689826999998519
>d3ehbb1 b.6.1.2 (B:108-252) Cytochrome c oxidase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1v54b1 b.6.1.2 (B:91-227) Cytochrome c oxidase {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3dtub1 b.6.1.2 (B:130-281) Cytochrome c oxidase {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]} Back     information, alignment and structure
>d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal domain {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d1fwxa1 b.6.1.4 (A:452-581) Nitrous oxide reductase, C-terminal domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1qhqa_ b.6.1.1 (A:) Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]} Back     information, alignment and structure
>d2ccwa1 b.6.1.1 (A:1-129) Azurin {Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]} Back     information, alignment and structure
>d1cuoa_ b.6.1.1 (A:) Azurin {Methylomonas sp. j [TaxId: 32038]} Back     information, alignment and structure
>d1jzga_ b.6.1.1 (A:) Azurin {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1nwpa_ b.6.1.1 (A:) Azurin {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2ov0a1 b.6.1.1 (A:1-105) Amicyanin {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ibya_ b.6.1.4 (A:) Red copper protein nitrosocyanin {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1id2a_ b.6.1.1 (A:) Amicyanin {Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d2jxma1 b.6.1.1 (A:1-97) Plastocyanin {Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]} Back     information, alignment and structure
>d1bqka_ b.6.1.1 (A:) Pseudoazurin {Achromobacter cycloclastes [TaxId: 223]} Back     information, alignment and structure
>d1pcsa_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1bypa_ b.6.1.1 (A:) Plastocyanin {White campion (Silene pratensis) [TaxId: 52853]} Back     information, alignment and structure
>d1adwa_ b.6.1.1 (A:) Pseudoazurin {Thiosphaera pantotropha [TaxId: 82367]} Back     information, alignment and structure
>d2q5ba1 b.6.1.1 (A:1-105) Plastocyanin {Cyanobacterium (Phormidium laminosum) [TaxId: 32059]} Back     information, alignment and structure
>d1bxua_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]} Back     information, alignment and structure
>d1kcwa2 b.6.1.3 (A:193-338) Ceruloplasmin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kdja_ b.6.1.1 (A:) Plastocyanin {Fern (Adiantum capillus-veneris) [TaxId: 13818]} Back     information, alignment and structure
>d1pmya_ b.6.1.1 (A:) Pseudoazurin {Methylobacterium extorquens, strain am1 [TaxId: 408]} Back     information, alignment and structure

Homologous Domains in MMDB70 Database Detected by RPS-BLAST

Original result of RPS-BLAST against MMDB70 database

IdentityAlignment graphLength Definition E-value
Target 332 ubiquinol oxidase, subunit II [Candidatus Liberiba
1fft_B_119-315197 (B:119-315) Ubiquinol oxidase; electron transport, 2e-29
1cyx_A_205 (A:) CYOA; electron transport; 2.30A {Escherichia 4e-25
2gsm_B_103-262160 (B:103-262) Cytochrome C oxidase subunit 2; transm 4e-16
3hb3_B_137-298162 (B:137-298) Cytochrome C oxidase subunit 2; electr 6e-12
1v54_B_92-227136 (B:92-227) Cytochrome C oxidase polypeptide II; ox 2e-09
1xme_B_55-168114 (B:55-168) Cytochrome C oxidase polypeptide II; cy 3e-09
2cua_A_135 (A:) Protein (CUA); CUA center, electron transport 1e-07
1qni_A_453-581129 (A:453-581) Nitrous-oxide reductase; oxidoreductas 7e-07
1fwx_A_45-81_463-595170 (A:45-81,A:463-595) Nitrous oxide reductase; beta- 2e-05
>1fft_B (B:119-315) Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli}Length = 197 Back     alignment and structure
 Score =  124 bits (311), Expect = 2e-29
 Identities = 75/185 (40%), Positives = 113/185 (61%), Gaps = 2/185 (1%)

Query: 138 NSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAGQ 197
           + KP+ +EVV++DWKW F+ PEQ +A +NE+  P + P+ F++T++SVMNSF+IP L  Q
Sbjct: 5   DEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPVYFKVTSNSVMNSFFIPRLGSQ 64

Query: 198 IYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKS-EKGFEDWISKVKRQG 256
           IYAMAGM+T+LH + N+ G Y G SA+YSG GFS M+FK         F+ W++K K+  
Sbjct: 65  IYAMAGMQTRLHLIANEPGTYDGISASYSGPGFSGMKFKAIATPDRAAFDQWVAKAKQSP 124

Query: 257 TFLNRQE-YLLLKKPSERDSVRYFSPIEKGLYYSILNLCVHPGKICMDEMMRIDALGGGG 315
             ++    +  L  PSE + V YFS ++  L+  ++N  +  GK         +     G
Sbjct: 125 NTMSDMAAFEKLAAPSEYNQVEYFSNVKPDLFADVINKFMAHGKSMDMTQPEGEHSAHEG 184

Query: 316 MRGID 320
           M G+D
Sbjct: 185 MEGMD 189
>1cyx_A (A:) CYOA; electron transport; 2.30A {Escherichia coli}Length = 205 Back     alignment and structure
>2gsm_B (B:103-262) Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides}Length = 160 Back     alignment and structure
>3hb3_B (B:137-298) Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*Length = 162 Back     alignment and structure
>1v54_B (B:92-227) Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus}Length = 136 Back     alignment and structure
>1xme_B (B:55-168) Cytochrome C oxidase polypeptide II; cytochrome oxidase, heme, heme-AS, integral membrane protein, oxidoreductase; HET: BNG HEM HAS; 2.30A {Thermus thermophilus}Length = 114 Back     alignment and structure
>2cua_A (A:) Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus}Length = 135 Back     alignment and structure
>1qni_A (A:453-581) Nitrous-oxide reductase; oxidoreductase, denitrification, MAD, electron transfer; 2.40A {Pseudomonas nautica}Length = 129 Back     alignment and structure
>1fwx_A (A:45-81,A:463-595) Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site, oxidoreductase; 1.60A {Paracoccus denitrificans}Length = 170 Back     alignment and structure

Homologous Domains in MMDB70 Database Detected by HHsearch

Original result of HHsearch against MMDB70 database

IdentityAlignment graphLength Definition Probability
Target332 ubiquinol oxidase, subunit II [Candidatus Liberibacter
1cyx_A_205 CYOA; electron transport; 2.30A {Escherichia coli} 100.0
1fft_B_119-315197 Ubiquinol oxidase; electron transport, cytochrome 100.0
3hb3_B_137-298162 Cytochrome C oxidase subunit 2; electron transfer, 100.0
2gsm_B_103-262160 Cytochrome C oxidase subunit 2; transmembrane prot 100.0
1v54_B_92-227136 Cytochrome C oxidase polypeptide II; oxidoreductas 100.0
1xme_B_55-168114 Cytochrome C oxidase polypeptide II; cytochrome ox 99.98
2cua_A_135 Protein (CUA); CUA center, electron transport; 1.6 99.97
1qni_A_453-581129 Nitrous-oxide reductase; oxidoreductase, denitrifi 99.95
1fwx_A_45-81_463-595170 Nitrous oxide reductase; beta-propeller domain, cu 99.85
1paz_A_123 Pseudoazurin precursor; electron transfer(cupropro 98.65
1pmy_A_123 Pseudoazurin; electron transfer(cuproprotein); 1.5 98.52
3erx_A_123 Pseudoazurin; copper protein, high-resolution,, co 98.41
1id2_A_106 Amicyanin; beta barrel, type-1 blue copper protein 97.7
2ov0_A_105 Amicyanin; beta-sandwich, electron transport; 0.75 97.12
2ux6_A_122 Pseudoazurin; type-1 copper, metal-binding, redox 96.19
1b3i_A_97 PETE protein, protein (plastocyanin); electron tra 95.89
2dv6_A_1-146146 Nitrite reductase; electron transfer, reduction, d 95.79
1sdd_B_188-336149 Coagulation factor V; copper-binding protein, cofa 93.39
1iby_A_112 Nitrosocyanin; RED copper, cupredoxin, beta hairpi 99.94
3ef4_A_124 Pseudoazurin, blue copper protein; electron transf 98.19
1bxv_A_91 Plastocyanin; copper protein, electron transfer; 1 97.18
1iuz_A_98 Plastocyanin; electron transport; 1.60A {Ulva pert 96.61
3fsa_A_125 Azurin; copper, cupredoxin fold, metal-binding, pr 96.36
2aan_A_139 Auracyanin A; cupredoxin fold, electron transport; 95.87
3c75_A_132 Amicyanin; copper proteins, electron transfer comp 95.55
1cuo_A_129 Protein (azurin ISO-2); beta barrel, periplasmic, 95.55
1qhq_A_140 Protein (auracyanin); electron transfer, cupredoxi 94.81
1kdj_A_102 Plastocyanin; electron transfer, photosystem, PAI- 94.78
1byp_A_99 Protein (plastocyanin); electron transfer, photosy 94.67
1plc_A_99 Plastocyanin; electron transport; 1.33A {Populus n 94.66
2j5w_A_213-363151 Ceruloplasmin, ferroxidase; oxidoreductase, plasma 92.05
2plt_A_98 Plastocyanin; electron transport; 1.50A {Chlamydom 91.93
2gim_A_106 Plastocyanin; beta sheet, Cu, helix, electron tran 91.69
1mzy_A_160-333174 Copper-containing nitrite reductase; mutant M182T, 91.48
1mzy_A_1-159159 Copper-containing nitrite reductase; mutant M182T, 91.26
3cvb_A_105 Plastocyanin; cupredoxin, SELF assembly, copper, e 90.36
3hb3_B_1-136136 Cytochrome C oxidase subunit 2; electron transfer, 99.39
>1cyx_A (A:) CYOA; electron transport; 2.30A {Escherichia coli} Back     alignment and structure
Probab=100.00  E-value=0  Score=414.41  Aligned_cols=201  Identities=38%  Similarity=0.717  Sum_probs=190.5

Q ss_pred             HHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCHHCCCHHHCC
Q ss_conf             77513444200001244678888866899999843699996267877430689636982899998358101102201074
Q gi|254780474|r  117 THRMDPYAPLERISESKSIAKNSKPLVVEVVALDWKWLFLLPEQQVAIINELVVPIDRPLEFRITASSVMNSFYIPGLAG  196 (332)
Q Consensus       117 ~~~ldp~~p~~~~~~~~~~~~~~~~l~I~V~a~qW~W~F~YP~~giatvneL~lPv~~pV~f~ltS~DViHSF~IP~l~~  196 (332)
                      |+.|+|++|+         ..++++++|+|+|+||+|.|+||++++.++|+|+||+|+||+|+|||.|||||||||+|++
T Consensus         1 T~a~~~~~~~---------~~~~~~l~I~v~g~qW~W~f~Yp~~~~~~~n~l~iP~~~~V~~~ltS~DViHsF~iP~l~~   71 (205)
T 1cyx_A            1 THALEPSKPL---------AHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPVYFKVTSNSVMHSFFIPRLGS   71 (205)
T ss_dssp             -----------------------CCEEEEEEEETTEEEEEETTTTEEEESEEEEETTSCEEEEEEESSSCEEEEEGGGTE
T ss_pred             CCCCCCCCCC---------CCCCCCEEEEEEEEECEEEEEECCCCCCCCCEEEECCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf             9778989988---------8899988999999944089880899964011388506976899997687411243432210


Q ss_pred             EECCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEECC-HHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHCC
Q ss_conf             031169851489999427748966613326576113658999708-899999999986072456-989999976102126
Q gi|254780474|r  197 QIYAMAGMETKLHAVMNKKGAYSGFSANYSGRGFSHMRFKFYGKS-EKGFEDWISKVKRQGTFL-NRQEYLLLKKPSERD  274 (332)
Q Consensus       197 k~daiPG~~t~l~~~a~~~G~y~G~cae~cG~ghs~M~f~v~v~s-~~~f~~Wv~~~ka~~~~l-~~~~y~~l~~ps~~~  274 (332)
                      |+|+||||.|++||+++++|+|+|+|+||||.|||.|+|+|+|++ +++|++|++++|+.+..+ +.++|+.++.|++.+
T Consensus        72 k~daiPG~~~~~~~~~~~~G~y~g~Cae~CG~~Hs~M~~~v~vv~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (205)
T 1cyx_A           72 QIYAMAGMQTRLHLIANEPGTYDGICAEICGPGHSGMKFKAIATPDRAAFDQWVAKAKQSPNTMSDMAAFEKLAAPSEYN  151 (205)
T ss_dssp             EEEECTTCCEEEEECCSSSEEEEEEECSCCSTTSTTCCEEEEEESSHHHHHHHHHHHHTCSCCBCSHHHHHHHHSCCSSC
T ss_pred             EECCCCCCCEEEEECCCCCCCEEEEEHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC
T ss_conf             01006996047764047764306862112060223583699998999999999999763832354256899987776647


Q ss_pred             CCEEECCCCCCHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCHHHCCCCHHHH
Q ss_conf             3217204783542687315244488566021024666885234401100112
Q gi|254780474|r  275 SVRYFSPIEKGLYYSILNLCVHPGKICMDEMMRIDALGGGGMRGIDRHSLIY  326 (332)
Q Consensus       275 ~~~~f~~~~~~lf~~i~~~~~~~~~~~~~~~m~~~~~~g~~~~~~~~~~~~~  326 (332)
                      +.+|++++.|+||+.+++++++.|+.+.+..+..++.++.+|+++|+...+.
T Consensus       152 ~~~~~~~~~p~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~m~~~~~  203 (205)
T 1cyx_A          152 QVEYFSNVKPDLFADVINKFMAHGKSMDMTQPEGEHSAHEGMEGMDMSHAES  203 (205)
T ss_dssp             CCEEESCBCTTHHHHHHTTTC-------------------------------
T ss_pred             CCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             6126613581357789998753486655777412444468998736333334
>1fft_B (B:119-315) Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} Back     alignment and structure
>3hb3_B (B:137-298) Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B* Back     alignment and structure
>2gsm_B (B:103-262) Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} Back     alignment and structure
>1v54_B (B:92-227) Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} Back     alignment and structure
>1xme_B (B:55-168) Cytochrome C oxidase polypeptide II; cytochrome oxidase, heme, heme-AS, integral membrane protein, oxidoreductase; HET: BNG HEM HAS; 2.30A {Thermus thermophilus} Back     alignment and structure
>2cua_A (A:) Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} Back     alignment and structure
>1qni_A (A:453-581) Nitrous-oxide reductase; oxidoreductase, denitrification, MAD, electron transfer; 2.40A {Pseudomonas nautica} Back     alignment and structure
>1fwx_A (A:45-81,A:463-595) Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site, oxidoreductase; 1.60A {Paracoccus denitrificans} Back     alignment and structure
>1paz_A (A:) Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} Back     alignment and structure
>1pmy_A (A:) Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} Back     alignment and structure
>3erx_A (A:) Pseudoazurin; copper protein, high-resolution,, copper, electron transport, metal-binding, periplasm, transport; 1.25A {Paracoccus pantotrophus} PDB: 1adw_A Back     alignment and structure
>1id2_A (A:) Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} Back     alignment and structure
>2ov0_A (A:) Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} Back     alignment and structure
>2ux6_A (A:) Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A Back     alignment and structure
>1b3i_A (A:) PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} Back     alignment and structure
>2dv6_A (A:1-146) Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans} Back     alignment and structure
>1sdd_B (B:188-336) Coagulation factor V; copper-binding protein, cofactor, blood clotting; HET: NAG NDG; 2.80A {Bos taurus} Back     alignment and structure
>1iby_A (A:) Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} Back     alignment and structure
>3ef4_A (A:) Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} Back     alignment and structure
>1bxv_A (A:) Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus SP} Back     alignment and structure
>1iuz_A (A:) Plastocyanin; electron transport; 1.60A {Ulva pertusa} Back     alignment and structure
>3fsa_A (A:) Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} PDB: 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 2iwe_A* 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A 1e5z_A 1e5y_A 1e67_A ... Back     alignment and structure
>2aan_A (A:) Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus} Back     alignment and structure
>3c75_A (A:) Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>1cuo_A (A:) Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} Back     alignment and structure
>1qhq_A (A:) Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin- like, thermophIle; 1.55A {Chloroflexus aurantiacus} Back     alignment and structure
>1kdj_A (A:) Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} Back     alignment and structure
>1byp_A (A:) Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant; 1.75A {Silene pratensis} Back     alignment and structure
>1plc_A (A:) Plastocyanin; electron transport; 1.33A {Populus nigra} Back     alignment and structure
>2j5w_A (A:213-363) Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} Back     alignment and structure
>2plt_A (A:) Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} Back     alignment and structure
>2gim_A (A:) Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} Back     alignment and structure
>1mzy_A (A:160-333) Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron transfer, oxidoreductase; 1.46A {Rhodobacter sphaeroides} Back     alignment and structure