254780475
50S ribosomal protein L33
GeneID in NCBI database: | 8209464 | Locus tag: | CLIBASIA_01800 |
Protein GI in NCBI database: | 254780475 | Protein Accession: | YP_003064888.1 |
Gene range: | +(398023, 398190) | Protein Length: | 55aa |
Gene description: | 50S ribosomal protein L33 | ||
COG prediction: | [J] Ribosomal protein L33 | ||
KEGG prediction: | rpmG; 50S ribosomal protein L33; K02913 large subunit ribosomal protein L33 | ||
SEED prediction: | LSU ribosomal protein L33p | ||
Pathway involved in KEGG: | Ribosome [PATH:las03010] | ||
Subsystem involved in SEED: | Ribosome LSU bacterial | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 55 | 50S ribosomal protein L33 [Candidatus Liberibacter asia | |||
315122069 | 55 | 50S ribosomal protein L33 [Candidatus Liberibacter sola | 1 | 4e-18 | |
39936192 | 55 | 50S ribosomal protein L33 [Rhodopseudomonas palustris C | 1 | 9e-17 | |
49475579 | 55 | 50S ribosomal protein L33 [Bartonella henselae str. Hou | 1 | 9e-17 | |
255263269 | 55 | ribosomal protein L33 [Thalassiobium sp. R2A62] Length | 1 | 1e-16 | |
319408529 | 55 | 50S ribosomal protein L33 [Bartonella schoenbuchensis R | 1 | 1e-16 | |
121602423 | 55 | 50S ribosomal protein L33 [Bartonella bacilliformis KC5 | 1 | 1e-16 | |
254502317 | 55 | ribosomal protein L33 [Labrenzia alexandrii DFL-11] Len | 1 | 1e-16 | |
49474249 | 55 | 50S ribosomal protein L33 [Bartonella quintana str. Tou | 1 | 1e-16 | |
159184701 | 55 | 50S ribosomal protein L33 [Agrobacterium tumefaciens st | 1 | 2e-16 | |
254474190 | 55 | ribosomal protein L33 [Pseudovibrio sp. JE062] Length = | 1 | 2e-16 |
>gi|315122069|ref|YP_004062558.1| 50S ribosomal protein L33 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 55 | Back alignment and organism information |
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Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 46/55 (83%), Positives = 50/55 (90%) Query: 1 MAKAATIKIKLISSAGTGSFYVTKKNSRTMSGKMVKNKYDPVIRKHVEFKEGKIK 55 MAKAATIKIKLISS GTG+FYVTKKNSRTM +MVK KYDPV+RKHV+F EGKIK Sbjct: 1 MAKAATIKIKLISSEGTGTFYVTKKNSRTMPKQMVKRKYDPVVRKHVDFTEGKIK 55 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|39936192|ref|NP_948468.1| 50S ribosomal protein L33 [Rhodopseudomonas palustris CGA009] Length = 55 | Back alignment and organism information |
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>gi|49475579|ref|YP_033620.1| 50S ribosomal protein L33 [Bartonella henselae str. Houston-1] Length = 55 | Back alignment and organism information |
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>gi|255263269|ref|ZP_05342611.1| ribosomal protein L33 [Thalassiobium sp. R2A62] Length = 55 | Back alignment and organism information |
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>gi|319408529|emb|CBI82182.1| 50S ribosomal protein L33 [Bartonella schoenbuchensis R1] Length = 55 | Back alignment and organism information |
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>gi|121602423|ref|YP_989134.1| 50S ribosomal protein L33 [Bartonella bacilliformis KC583] Length = 55 | Back alignment and organism information |
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>gi|254502317|ref|ZP_05114468.1| ribosomal protein L33 [Labrenzia alexandrii DFL-11] Length = 55 | Back alignment and organism information |
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>gi|49474249|ref|YP_032291.1| 50S ribosomal protein L33 [Bartonella quintana str. Toulouse] Length = 55 | Back alignment and organism information |
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>gi|159184701|ref|NP_529204.1| 50S ribosomal protein L33 [Agrobacterium tumefaciens str. C58] Length = 55 | Back alignment and organism information |
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>gi|254474190|ref|ZP_05087581.1| ribosomal protein L33 [Pseudovibrio sp. JE062] Length = 55 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 55 | 50S ribosomal protein L33 [Candidatus Liberibacter asia | ||
PRK00595 | 53 | PRK00595, rpmG, 50S ribosomal protein L33; Validated | 1e-13 | |
TIGR01023 | 54 | TIGR01023, rpmG_bact, ribosomal protein L33, bacterial | 6e-08 | |
COG0267 | 50 | COG0267, RpmG, Ribosomal protein L33 [Translation, ribo | 7e-07 | |
KOG3505 | 55 | KOG3505, KOG3505, KOG3505, Mitochondrial/chloroplast ri | 0.001 | |
pfam00471 | 48 | pfam00471, Ribosomal_L33, Ribosomal protein L33 | 1e-09 |
>gnl|CDD|179075 PRK00595, rpmG, 50S ribosomal protein L33; Validated | Back alignment and domain information |
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>gnl|CDD|162161 TIGR01023, rpmG_bact, ribosomal protein L33, bacterial type | Back alignment and domain information |
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>gnl|CDD|30616 COG0267, RpmG, Ribosomal protein L33 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>gnl|CDD|38715 KOG3505, KOG3505, KOG3505, Mitochondrial/chloroplast ribosomal protein L33-like [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>gnl|CDD|144167 pfam00471, Ribosomal_L33, Ribosomal protein L33 | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 55 | 50S ribosomal protein L33 [Candidatus Liberibacter asia | ||
TIGR01023 | 67 | rpmG_bact ribosomal protein L33; InterPro: IPR001705 Ri | 99.93 | |
PRK00595 | 53 | rpmG 50S ribosomal protein L33; Validated | 99.9 | |
CHL00104 | 66 | rpl33 ribosomal protein L33 | 99.85 | |
pfam00471 | 48 | Ribosomal_L33 Ribosomal protein L33. | 99.83 | |
COG0267 | 50 | RpmG Ribosomal protein L33 [Translation, ribosomal stru | 99.82 | |
PRK00504 | 50 | rpmG 50S ribosomal protein L33; Validated | 99.78 | |
KOG3505 | 55 | consensus | 99.51 | |
PRK05767 | 91 | rpl44e 50S ribosomal protein L44e; Validated | 91.75 | |
COG1631 | 94 | RPL42A Ribosomal protein L44E [Translation, ribosomal s | 90.39 |
>TIGR01023 rpmG_bact ribosomal protein L33; InterPro: IPR001705 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
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>PRK00595 rpmG 50S ribosomal protein L33; Validated | Back alignment and domain information |
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>CHL00104 rpl33 ribosomal protein L33 | Back alignment and domain information |
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>pfam00471 Ribosomal_L33 Ribosomal protein L33 | Back alignment and domain information |
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>COG0267 RpmG Ribosomal protein L33 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>PRK00504 rpmG 50S ribosomal protein L33; Validated | Back alignment and domain information |
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>KOG3505 consensus | Back alignment and domain information |
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>PRK05767 rpl44e 50S ribosomal protein L44e; Validated | Back alignment and domain information |
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>COG1631 RPL42A Ribosomal protein L44E [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 55 | 50S ribosomal protein L33 [Candidatus Liberibacter asia | ||
1nkw_1 | 82 | Crystal Structure Of The Large Ribosomal Subunit Fr | 2e-15 | |
1vs6_1 | 55 | Crystal Structure Of The Bacterial Ribosome From Es | 4e-14 | |
1p85_1 | 54 | Real Space Refined Coordinates Of The 50s Subunit F | 2e-13 | |
2gya_1 | 52 | Structure Of The 50s Subunit Of A Pre-Translocation | 1e-12 | |
1nwx_1 | 55 | Complex Of The Large Ribosomal Subunit From Deinoco | 3e-12 | |
3fik_1 | 50 | Ternary Complex-Bound E.Coli 70s Ribosome. This Ent | 6e-12 | |
2j01_6 | 54 | Structure Of The Thermus Thermophilus 70s Ribosome | 2e-11 | |
1pnu_1 | 53 | Crystal Structure Of A Streptomycin Dependent Ribos | 2e-11 | |
3fin_6 | 45 | T. Thermophilus 70s Ribosome In Complex With Mrna, | 1e-08 | |
3pyo_3 | 44 | Crystal Structure Of A Complex Containing Domain 3 | 1e-08 | |
3bbo_3 | 66 | Homology Model For The Spinach Chloroplast 50s Subu | 3e-07 | |
2ftc_P | 52 | Structural Model For The Large Subunit Of The Mamma | 2e-06 |
>gi|28948945|pdb|1NKW|1 Chain 1, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 82 | Back alignment and structure |
Score = 85.7 bits (212), Expect = 2e-15, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 35/55 (63%), Gaps = 1/55 (1%) Query: 1 MAK-AATIKIKLISSAGTGSFYVTKKNSRTMSGKMVKNKYDPVIRKHVEFKEGKI 54 MAK I +K+ SSAGTG +Y T KN R K+ KYDPV +KHV F+E K+ Sbjct: 28 MAKDGPRIIVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKHVVFREKKV 82 |
gi|116666596|pdb|1VS6|1 Chain 1, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 55 | Back alignment and structure |
>gi|33357925|pdb|1P85|1 Chain 1, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 54 | Back alignment and structure |
>gi|116667458|pdb|2GYA|1 Chain 1, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 52 | Back alignment and structure |
gi|29726813|pdb|1NWX|1 Chain 1, Complex Of The Large Ribosomal Subunit From Deinococcus Radiodurans With Abt-773 Length = 55 | Back alignment and structure |
>gi|224510758|pdb|3FIK|1 Chain 1, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit. Length = 50 | Back alignment and structure |
gi|116668228|pdb|2J01|6 Chain 6, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 54 | Back alignment and structure |
>gi|34811580|pdb|1PNU|1 Chain 1, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 53 | Back alignment and structure |
>gi|224510775|pdb|3FIN|6 Chain 6, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef-Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 45 | Back alignment and structure |
>gi|322812600|pdb|3PYO|3 Chain 3, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. Length = 44 | Back alignment and structure |
gi|189096151|pdb|3BBO|3 Chain 3, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 66 | Back alignment and structure |
>gi|99032322|pdb|2FTC|P Chain P, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 52 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 55 | 50S ribosomal protein L33 [Candidatus Liberibacter asia | ||
1nkw_1 | 82 | 50S ribosomal protein L33; ribosome, large subunit, X- | 8e-14 | |
3i1n_1 | 55 | 50S ribosomal protein L33; ribosome structure, protein- | 1e-13 | |
2zjr_1 | 55 | 50S ribosomal protein L33; ribosome, large ribosomal su | 3e-12 | |
3ofq_1 | 50 | 50S ribosomal protein L33; protein biosynthesis, riboso | 8e-12 | |
2ftc_P | 52 | Mitochondrial ribosomal protein L33 isoform A, mitochon | 2e-09 | |
2j01_6 | 54 | 50S ribosomal protein L33; ribosome, tRNA, paromomycin, | 5e-09 | |
3bbo_3 | 66 | Ribosomal protein L33; large ribosomal subunit, spinach | 7e-04 |
>1nkw_1 50S ribosomal protein L33; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_1* 1yl3_6 2b66_6 2b9n_6 2b9p_6 Length = 82 | Back alignment and structure |
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Score = 70.6 bits (173), Expect = 8e-14 Identities = 28/55 (50%), Positives = 35/55 (63%), Gaps = 1/55 (1%) Query: 1 MAK-AATIKIKLISSAGTGSFYVTKKNSRTMSGKMVKNKYDPVIRKHVEFKEGKI 54 MAK I +K+ SSAGTG +Y T KN R K+ KYDPV +KHV F+E K+ Sbjct: 28 MAKDGPRIIVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKHVVFREKKV 82 |
>3i1n_1 50S ribosomal protein L33; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_1 1vs6_1 3i1p_1 3i1r_1 3i1t_1 3i20_1 3i22_1 2qam_1* 1p85_1 1p86_1 2awb_1 2aw4_1 2i2v_1 2j28_1 2i2t_1* 2qao_1* 2qba_1* 2qbc_1* 2qbe_1 2qbg_1 ... Length = 55 | Back alignment and structure |
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>2zjr_1 50S ribosomal protein L33; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.6 PDB: 1nwx_1* 1xbp_1* 2zjp_1* 2zjq_1 1nwy_1 3cf5_1* 3dll_1* 1pnu_1 1pny_1 1vor_3 1vou_3 1vow_3 1voy_3 1vp0_3 Length = 55 | Back alignment and structure |
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>3ofq_1 50S ribosomal protein L33; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 3fik_1 2wwq_4 3ofr_1* 3i1n_1 1vs8_1 1vs6_1 1vt2_1 3i1p_1 3i1r_1 3i1t_1 3i20_1 3i22_1 3kcr_1 3orb_1* 2gya_1 2gyc_1 2qam_1* 1p85_1 1p86_1 2awb_1 ... Length = 50 | Back alignment and structure |
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>2ftc_P Mitochondrial ribosomal protein L33 isoform A, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} PDB: 3iy9_P Length = 52 | Back alignment and structure |
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>2j01_6 50S ribosomal protein L33; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: g.41.8.6 PDB: 2hgq_5 2hgj_5 2hgu_5 2j03_6 2jl6_6 2jl8_6 2v47_6 2v49_6 2wdi_6 2wdj_6 2wdl_6 2wdn_6 2wh2_6 2wh4_6 3d5b_6 3d5d_6 3f1f_6 3f1h_6 3hux_6 3huz_6 ... Length = 54 | Back alignment and structure |
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>3bbo_3 Ribosomal protein L33; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 66 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 55 | 50S ribosomal protein L33 [Candidatus Liberibacter asia | ||
2zjr_1 | 55 | 50S ribosomal protein L33; ribosome, large ribosomal su | 99.91 | |
1nkw_1 | 82 | 50S ribosomal protein L33; ribosome, large subunit, X- | 99.91 | |
2j01_6 | 54 | 50S ribosomal protein L33; ribosome, tRNA, paromomycin, | 99.85 | |
3ofq_1 | 50 | 50S ribosomal protein L33; protein biosynthesis, riboso | 99.84 | |
3bbo_3 | 66 | Ribosomal protein L33; large ribosomal subunit, spinach | 99.83 | |
2ftc_P | 52 | Mitochondrial ribosomal protein L33 isoform A, mitochon | 99.8 | |
1vq8_3 | 92 | 50S ribosomal protein L44E; ribosome 50S, protein-prote | 93.28 | |
2zkr_4 | 106 | 60S ribosomal protein L44E; protein-RNA complex, 60S ri | 90.95 |
>2zjr_1 50S ribosomal protein L33; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.6 PDB: 1nwx_1* 1xbp_1* 2zjp_1* 2zjq_1 1nwy_1 3cf5_1* 3dll_1* 1pnu_1 1pny_1 1vor_3 1vou_3 1vow_3 1voy_3 1vp0_3 | Back alignment and structure |
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Probab=99.91 E-value=3.3e-25 Score=151.20 Aligned_cols=54 Identities=52% Similarity=0.782 Sum_probs=52.7 Q ss_pred CCC-CCEEEEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCCCCEEEEEEEEE Q ss_conf 987-762699999517788759835488998333699413174463446688650 Q gi|254780475|r 1 MAK-AATIKIKLISSAGTGSFYVTKKNSRTMSGKMVKNKYDPVIRKHVEFKEGKI 54 (55) Q Consensus 1 MaK-~~r~~I~L~st~~tg~~Y~T~knk~~~~~klel~Ky~p~~~kHvl~~E~Ki 54 (55) ||| ++|++|+|+|+||+|++|+|+||++|+||||||+||||+||+||+|+|+|| T Consensus 1 MAKk~~rv~I~L~st~~t~~~Y~t~Kn~~~~~~kLel~Ky~p~~rkh~lhkE~Ki 55 (55) T 2zjr_1 1 MAKDGPRIIVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKHVVFREKKV 55 (55) T ss_pred CCCCCCEEEEEEEEECCCCCEEEEECCCCCCCHHEEEECCCCCCCCEEEEEEEEC T ss_conf 9887780799999958989789771688999403179733878872561886309 |
>1nkw_1 50S ribosomal protein L33; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_1* 1yl3_6 2b66_6 2b9n_6 2b9p_6 | Back alignment and structure |
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>2j01_6 50S ribosomal protein L33; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: g.41.8.6 PDB: 2hgq_5 2hgj_5 2hgu_5 2j03_6 2jl6_6 2jl8_6 2v47_6 2v49_6 2wdi_6 2wdj_6 2wdl_6 2wdn_6 2wh2_6 2wh4_6 2wrj_6 2wrl_6 2wro_6 2wrr_6 2x9s_6 2x9u_6 ... | Back alignment and structure |
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>3ofq_1 50S ribosomal protein L33; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 3fik_1 2wwq_4 3ofr_1* 3i1n_1 1vs8_1 1vs6_1 1vt2_1 3i1p_1 3i1r_1 3i1t_1 3i20_1 3i22_1 3kcr_1 3orb_1* 2gya_1 2gyc_1 2qam_1* 1p85_1 1p86_1 2awb_1 ... | Back alignment and structure |
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>3bbo_3 Ribosomal protein L33; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} | Back alignment and structure |
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>2ftc_P Mitochondrial ribosomal protein L33 isoform A, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} PDB: 3iy9_P | Back alignment and structure |
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>1vq8_3 50S ribosomal protein L44E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.3 PDB: 1jj2_2 1k73_4* 1k8a_4* 1k9m_4* 1kc8_4* 1kd1_4* 1kqs_2* 1m1k_4* 1m90_4* 1n8r_4* 1nji_4* 1q7y_4* 1q81_4* 1q82_4* 1q86_4* 1qvf_2 1qvg_2 1s72_3* 1vq4_3* 1vq5_3* ... | Back alignment and structure |
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>2zkr_4 60S ribosomal protein L44E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1 PDB: 1s1i_Z 3jyw_Z | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
55 | 50S ribosomal protein L33 [Candidatus Liberibacter asia | |||
d2gyc11 | 52 | g.41.8.6 (1:1-52) Ribosomal protein L33p {Escherichia c | 3e-12 | |
d2j0161 | 45 | g.41.8.6 (6:9-53) Ribosomal protein L33p {Thermus therm | 3e-04 |
>d2gyc11 g.41.8.6 (1:1-52) Ribosomal protein L33p {Escherichia coli [TaxId: 562]} Length = 52 | Back information, alignment and structure |
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class: Small proteins fold: Rubredoxin-like superfamily: Zn-binding ribosomal proteins family: Ribosomal protein L33p domain: Ribosomal protein L33p species: Escherichia coli [TaxId: 562] Score = 64.2 bits (157), Expect = 3e-12 Identities = 30/52 (57%), Positives = 36/52 (69%) Query: 2 AKAATIKIKLISSAGTGSFYVTKKNSRTMSGKMVKNKYDPVIRKHVEFKEGK 53 AK KIKL+SSAGTG FY T KN RT K+ K+DPV+R+HV +KE K Sbjct: 1 AKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAK 52 |
>d2j0161 g.41.8.6 (6:9-53) Ribosomal protein L33p {Thermus thermophilus [TaxId: 274]} Length = 45 | Back information, alignment and structure |
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Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 55 | 50S ribosomal protein L33 [Candidatus Liberibacter asia | ||
d2zjr11 | 53 | Ribosomal protein L33p {Deinococcus radiodurans [TaxId: | 99.88 | |
d2gyc11 | 52 | Ribosomal protein L33p {Escherichia coli [TaxId: 562]} | 99.86 | |
d2j0161 | 45 | Ribosomal protein L33p {Thermus thermophilus [TaxId: 27 | 99.7 | |
d1vqo31 | 92 | Ribosomal protein L44e {Archaeon Haloarcula marismortui | 93.2 |
>d2zjr11 g.41.8.6 (1:2-54) Ribosomal protein L33p {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
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class: Small proteins fold: Rubredoxin-like superfamily: Zn-binding ribosomal proteins family: Ribosomal protein L33p domain: Ribosomal protein L33p species: Deinococcus radiodurans [TaxId: 1299] Probab=99.88 E-value=1.3e-23 Score=141.66 Aligned_cols=51 Identities=49% Similarity=0.746 Sum_probs=49.6 Q ss_pred CCCEEEEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCCCCEEEEEEEE Q ss_conf 776269999951778875983548899833369941317446344668865 Q gi|254780475|r 3 KAATIKIKLISSAGTGSFYVTKKNSRTMSGKMVKNKYDPVIRKHVEFKEGK 53 (55) Q Consensus 3 K~~r~~I~L~st~~tg~~Y~T~knk~~~~~klel~Ky~p~~~kHvl~~E~K 53 (55) |++|++|+|+|+||+|++|+|+||++|+||||||+||||+|++||+|+|+| T Consensus 3 k~~rv~I~L~st~~tg~~Y~t~Kn~~~~~~klel~KydP~~rkhvl~kE~K 53 (53) T d2zjr11 3 DGPRIIVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKHVVFREKK 53 (53) T ss_pred CCCCEEEEEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCCCEEEEEECC T ss_conf 776289999985898988977067899962057974387875055187449 |
>d2gyc11 g.41.8.6 (1:1-52) Ribosomal protein L33p {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d2j0161 g.41.8.6 (6:9-53) Ribosomal protein L33p {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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>d1vqo31 g.41.8.3 (3:1-92) Ribosomal protein L44e {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
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Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 55 | 50S ribosomal protein L33 [Candidatus Liberibacter | ||
1nkw_1_ | 82 | (1:) 50S ribosomal protein L33; ribosome, large su | 8e-12 | |
3i1n_1_ | 55 | (1:) 50S ribosomal protein L33; ribosome structure | 8e-12 | |
2j01_6_ | 54 | (6:) 50S ribosomal protein L33; ribosome, tRNA, pa | 2e-11 | |
2zjr_1_ | 55 | (1:) 50S ribosomal protein L33; ribosome, large ri | 2e-10 | |
2ftc_P_ | 52 | (P:) Mitochondrial ribosomal protein L33 isoform A | 3e-09 | |
3bbo_3_ | 66 | (3:) Ribosomal protein L33; large ribosomal subuni | 8e-06 |
>1nkw_1 (1:) 50S ribosomal protein L33; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans}Length = 82 | Back alignment and structure |
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Score = 64.0 bits (156), Expect = 8e-12 Identities = 25/53 (47%), Positives = 32/53 (60%) Query: 2 AKAATIKIKLISSAGTGSFYVTKKNSRTMSGKMVKNKYDPVIRKHVEFKEGKI 54 I +K+ SSAGTG +Y T KN R K+ KYDPV +KHV F+E K+ Sbjct: 30 KDGPRIIVKMESSAGTGFYYTTTKNRRNTQAKLELKKYDPVAKKHVVFREKKV 82 |
>3i1n_1 (1:) 50S ribosomal protein L33; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_1 1vs6_1 3i1p_1 3i1r_1 3i1t_1 3i20_1 3i22_1 2qam_1* 1p85_1 1p86_1 2awb_1 2aw4_1 2i2v_1 2j28_1 2i2t_1* 2qao_1* 2qba_1* 2qbc_1* 2qbe_1 2qbg_1 ...Length = 55 | Back alignment and structure |
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>2j01_6 (6:) 50S ribosomal protein L33; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus}Length = 54 | Back alignment and structure |
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>2zjr_1 (1:) 50S ribosomal protein L33; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans}Length = 55 | Back alignment and structure |
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>2ftc_P (P:) Mitochondrial ribosomal protein L33 isoform A, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} PDB: 3iy9_PLength = 52 | Back alignment and structure |
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>3bbo_3 (3:) Ribosomal protein L33; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}Length = 66 | Back alignment and structure |
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Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 55 | 50S ribosomal protein L33 [Candidatus Liberibacter asia | ||
3i1n_1_ | 55 | 50S ribosomal protein L33; ribosome structure, pro | 99.91 | |
2zjr_1_ | 55 | 50S ribosomal protein L33; ribosome, large ribosom | 99.9 | |
1nkw_1_ | 82 | 50S ribosomal protein L33; ribosome, large subunit | 99.89 | |
2j01_6_ | 54 | 50S ribosomal protein L33; ribosome, tRNA, paromom | 99.88 | |
2ftc_P_ | 52 | Mitochondrial ribosomal protein L33 isoform A, mit | 99.84 | |
3bbo_3_ | 66 | Ribosomal protein L33; large ribosomal subunit, sp | 99.83 | |
2zkr_4_ | 106 | 60S ribosomal protein L44E; protein-RNA complex, 6 | 91.95 | |
1vq8_3_ | 92 | 50S ribosomal protein L44E; ribosome 50S, protein- | 91.4 |
>3i1n_1 (1:) 50S ribosomal protein L33; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_1 1vs6_1 3i1p_1 3i1r_1 3i1t_1 3i20_1 3i22_1 2qam_1* 1p85_1 1p86_1 2awb_1 2aw4_1 2i2v_1 2j28_1 2i2t_1* 2qao_1* 2qba_1* 2qbc_1* 2qbe_1 2qbg_1 ... | Back alignment and structure |
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Probab=99.91 E-value=1.7e-25 Score=153.54 Aligned_cols=55 Identities=60% Similarity=0.860 Sum_probs=54.4 Q ss_pred CCCCCEEEEEEEECCCCCCEEEEECCCCCCCCEEEEEECCCCCCCEEEEEEEEEC Q ss_conf 9877626999995177887598354889983336994131744634466886509 Q gi|254780475|r 1 MAKAATIKIKLISSAGTGSFYVTKKNSRTMSGKMVKNKYDPVIRKHVEFKEGKIK 55 (55) Q Consensus 1 MaK~~r~~I~L~st~~tg~~Y~T~knk~~~~~klel~Ky~p~~~kHvl~~E~KiK 55 (55) |||+.|++|+|+|++|+++||+|+||++++||||||+||||+|++||+|+|+||| T Consensus 1 Mak~~r~~i~L~ct~c~~~nY~T~KN~~~~~~rLel~Kycp~~~khtlhkE~Kik 55 (55) T 3i1n_1 1 MAKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQHVIYKEAKIK 55 (55) T ss_dssp ---CCCBCCCEEESSSSCCEECCCBCSSSCCSCCCEEEEETTTTEEEEEECCC-- T ss_pred CCCCCCCEEEEEEECCCCEEEEECCCCCCCCHHEEEECCCCCCCCEEEEEEEECC T ss_conf 9976551699998288881797647888994144897418787856608876529 |
>2zjr_1 (1:) 50S ribosomal protein L33; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} | Back alignment and structure |
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>1nkw_1 (1:) 50S ribosomal protein L33; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} | Back alignment and structure |
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>2j01_6 (6:) 50S ribosomal protein L33; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} | Back alignment and structure |
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>2ftc_P (P:) Mitochondrial ribosomal protein L33 isoform A, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} PDB: 3iy9_P | Back alignment and structure |
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>3bbo_3 (3:) Ribosomal protein L33; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} | Back alignment and structure |
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>2zkr_4 (4:) 60S ribosomal protein L44E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} | Back alignment and structure |
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>1vq8_3 (3:) 50S ribosomal protein L44E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} | Back alignment and structure |
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