254780478
hypothetical protein CLIBASIA_01815
GeneID in NCBI database: | 8209467 | Locus tag: | CLIBASIA_01815 |
Protein GI in NCBI database: | 254780478 | Protein Accession: | YP_003064891.1 |
Gene range: | -(399950, 400435) | Protein Length: | 161aa |
Gene description: | hypothetical protein | ||
COG prediction: | none | ||
KEGG prediction: | hypothetical protein | ||
SEED prediction: | Argininosuccinate synthase | ||
Pathway involved in KEGG: | not defined | ||
Subsystem involved in SEED: | - none - | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 161 | hypothetical protein CLIBASIA_01815 [Candidatus Liberib | |||
315122066 | 171 | hypothetical protein CKC_01580 [Candidatus Liberibacter | 1 | 4e-63 | |
241203454 | 163 | hypothetical protein Rleg_0708 [Rhizobium leguminosarum | 1 | 8e-29 | |
150395768 | 168 | hypothetical protein Smed_0544 [Sinorhizobium medicae W | 1 | 2e-28 | |
190890709 | 164 | hypothetical protein RHECIAT_CH0001088 [Rhizobium etli | 1 | 2e-28 | |
15888142 | 175 | hypothetical protein Atu8137 [Agrobacterium tumefaciens | 1 | 2e-28 | |
222147828 | 182 | hypothetical protein Avi_1091 [Agrobacterium vitis S4] | 1 | 3e-28 | |
86356644 | 183 | hypothetical protein RHE_CH00998 [Rhizobium etli CFN 42 | 1 | 3e-28 | |
116250852 | 165 | hypothetical protein RL1079 [Rhizobium leguminosarum bv | 1 | 4e-28 | |
227821136 | 168 | hypothetical protein NGR_c05570 [Sinorhizobium fredii N | 1 | 6e-28 | |
222085161 | 165 | hypothetical protein Arad_1281 [Agrobacterium radiobact | 1 | 8e-28 |
>gi|315122066|ref|YP_004062555.1| hypothetical protein CKC_01580 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 171 | Back alignment and organism information |
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Score = 244 bits (622), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 109/161 (67%), Positives = 138/161 (85%) Query: 1 MIHFSQVIDDLLDPFLRRRAGISMSLVSAWSEIVGSNIARCCRPEKIIWPNRTSIERQDI 60 M+HFS++IDDLLDPFLRRRAGIS+SL+ WSE+VG ++A+ C+PEKIIWP R + +D Sbjct: 11 MMHFSEIIDDLLDPFLRRRAGISISLIGVWSELVGDDVAKHCKPEKIIWPRRDYADERDF 70 Query: 61 SSDVSGTLIIACEGSHALFLMHDQSKIIRNVNIFFGFCAIKRIRFLQRSMSIVNQAPSVS 120 SS++ G L+IACEG +ALFLMHDQSKIIRNVN+FFGFCAIK+IRFLQ+ + I NQ + Sbjct: 71 SSNIGGILVIACEGPYALFLMHDQSKIIRNVNVFFGFCAIKKIRFLQKPVGITNQDSPCA 130 Query: 121 IPALEKDDCEKIDKMTEGIKDEQLKRALIRFGHAVVGCSYL 161 IP+L ++DC+KI+KMTEGIKDE LK+AL+RFGHAV+G SYL Sbjct: 131 IPSLRENDCKKIEKMTEGIKDEPLKKALVRFGHAVIGFSYL 171 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|241203454|ref|YP_002974550.1| hypothetical protein Rleg_0708 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 163 | Back alignment and organism information |
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>gi|150395768|ref|YP_001326235.1| hypothetical protein Smed_0544 [Sinorhizobium medicae WSM419] Length = 168 | Back alignment and organism information |
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>gi|190890709|ref|YP_001977251.1| hypothetical protein RHECIAT_CH0001088 [Rhizobium etli CIAT 652] Length = 164 | Back alignment and organism information |
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>gi|15888142|ref|NP_353823.1| hypothetical protein Atu8137 [Agrobacterium tumefaciens str. C58] Length = 175 | Back alignment and organism information |
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>gi|222147828|ref|YP_002548785.1| hypothetical protein Avi_1091 [Agrobacterium vitis S4] Length = 182 | Back alignment and organism information |
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>gi|86356644|ref|YP_468536.1| hypothetical protein RHE_CH00998 [Rhizobium etli CFN 42] Length = 183 | Back alignment and organism information |
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>gi|116250852|ref|YP_766690.1| hypothetical protein RL1079 [Rhizobium leguminosarum bv. viciae 3841] Length = 165 | Back alignment and organism information |
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>gi|227821136|ref|YP_002825106.1| hypothetical protein NGR_c05570 [Sinorhizobium fredii NGR234] Length = 168 | Back alignment and organism information |
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>gi|222085161|ref|YP_002543691.1| hypothetical protein Arad_1281 [Agrobacterium radiobacter K84] Length = 165 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 161 | hypothetical protein CLIBASIA_01815 [Candidatus Liberib | ||
pfam05258 | 88 | pfam05258, DUF721, Protein of unknown function (DUF721) | 2e-11 | |
COG5389 | 181 | COG5389, COG5389, Uncharacterized protein conserved in | 7e-35 |
>gnl|CDD|147452 pfam05258, DUF721, Protein of unknown function (DUF721) | Back alignment and domain information |
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>gnl|CDD|34951 COG5389, COG5389, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 161 | hypothetical protein CLIBASIA_01815 [Candidatus Liberib | ||
COG5389 | 181 | Uncharacterized protein conserved in bacteria [Function | 99.98 | |
PRK00111 | 178 | hypothetical protein; Provisional | 99.68 | |
pfam05258 | 88 | DUF721 Protein of unknown function (DUF721). This famil | 99.67 | |
PRK03195 | 187 | hypothetical protein; Provisional | 99.65 | |
COG5512 | 194 | Zn-ribbon-containing, possibly RNA-binding protein and | 98.24 | |
COG4701 | 162 | Uncharacterized protein conserved in bacteria [Function | 96.74 | |
PRK08770 | 663 | DNA polymerase III subunits gamma and tau; Validated | 90.97 |
>COG5389 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
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>PRK00111 hypothetical protein; Provisional | Back alignment and domain information |
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>pfam05258 DUF721 Protein of unknown function (DUF721) | Back alignment and domain information |
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>PRK03195 hypothetical protein; Provisional | Back alignment and domain information |
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>COG5512 Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives [General function prediction only] | Back alignment and domain information |
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>COG4701 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
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>PRK08770 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
No homologous structure with e-value below 0.005
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 161 | hypothetical protein CLIBASIA_01815 [Candidatus Liberib | ||
1qzv_F | 154 | Plant photosystem I: subunit PSAF; photosynthesis,plant | 8e-05 |
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
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Score = 41.5 bits (96), Expect = 8e-05 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 6/30 (20%) Query: 99 AIKRIRFLQRSMSIV--NQAPSVSIPA-LE 125 A+K+ LQ S+ + + AP+++I A +E Sbjct: 21 ALKK---LQASLKLYADDSAPALAIKATME 47 |
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 90.00
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 90.00
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
No hit with e-value below 0.005
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
No hit with probability higher than 90.00