254780478

 Score =  244 bits (622), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 109/161 (67%), Positives = 138/161 (85%)

Query: 1   MIHFSQVIDDLLDPFLRRRAGISMSLVSAWSEIVGSNIARCCRPEKIIWPNRTSIERQDI 60
           M+HFS++IDDLLDPFLRRRAGIS+SL+  WSE+VG ++A+ C+PEKIIWP R   + +D 
Sbjct: 11  MMHFSEIIDDLLDPFLRRRAGISISLIGVWSELVGDDVAKHCKPEKIIWPRRDYADERDF 70

Query: 61  SSDVSGTLIIACEGSHALFLMHDQSKIIRNVNIFFGFCAIKRIRFLQRSMSIVNQAPSVS 120
           SS++ G L+IACEG +ALFLMHDQSKIIRNVN+FFGFCAIK+IRFLQ+ + I NQ    +
Sbjct: 71  SSNIGGILVIACEGPYALFLMHDQSKIIRNVNVFFGFCAIKKIRFLQKPVGITNQDSPCA 130

Query: 121 IPALEKDDCEKIDKMTEGIKDEQLKRALIRFGHAVVGCSYL 161
           IP+L ++DC+KI+KMTEGIKDE LK+AL+RFGHAV+G SYL
Sbjct: 131 IPSLRENDCKKIEKMTEGIKDEPLKKALVRFGHAVIGFSYL 171

Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  130 bits (326), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 64/155 (41%), Positives = 98/155 (63%), Gaps = 5/155 (3%)

Query: 3   HFSQVIDDLLDPFLRRRAGISMSLVSAWSEIVGSNIARCCRPEKIIWPNRTSIERQDISS 62
             S++ + L+DP L RRAGI+ +L+ +WSEI G + A C RPEKI W    +    +   
Sbjct: 10  QISELANGLIDPVLARRAGINTALLGSWSEIAGEDFADCTRPEKIAWARGGN----ETGG 65

Query: 63  DVSGTLIIACEGSHALFLMHDQSKIIRNVNIFFGFCAIKRIRFLQRSMSIVNQAPSVSIP 122
              G L IACEG+ ALFL H Q ++I+ +N FFGF A+ +IR +Q+ +S   +  S + P
Sbjct: 66  FRPGVLTIACEGARALFLTHAQGELIQRINSFFGFAAVHQIRIVQKPVSQAIRR-SRTPP 124

Query: 123 ALEKDDCEKIDKMTEGIKDEQLKRALIRFGHAVVG 157
            L+ +   K+D M EGI++++L++A+ R G AV+G
Sbjct: 125 PLKGEAARKLDSMMEGIENDKLRQAIQRLGTAVMG 159

Species: Rhizobium leguminosarum
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 94/156 (60%), Gaps = 2/156 (1%)

Query: 1   MIHFSQVIDDLLDPFLRRRAGISMSLVSAWSEIVGSNIARCCRPEKIIWPNRTSIERQDI 60
           ++  S+V + L+DP L +RAGI+  L+ +W EI GS  A C RPEKI WP R S E    
Sbjct: 10  VVQISEVANGLIDPVLAKRAGINTMLLGSWDEIAGSEFADCTRPEKIAWPRRAS-EMTGE 68

Query: 61  SSDVSGTLIIACEGSHALFLMHDQSKIIRNVNIFFGFCAIKRIRFLQRSMSIVNQAPSVS 120
                G L +ACEG+ ALFL H Q ++I+ +N FFGF AI ++R +Q+ ++   +  S  
Sbjct: 69  GGHQPGVLTVACEGARALFLTHAQGELIQRINGFFGFHAIGQLRIVQKPVAPPPKRYSRP 128

Query: 121 IPALEKDDCEKIDKMTEGIKDEQLKRALIRFGHAVV 156
            P L  +   +++ M EG++ E LK AL R G AV+
Sbjct: 129 KP-LVGEAARRLETMMEGVESEALKAALKRLGTAVL 163

Species: Sinorhizobium medicae
Genus: Sinorhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 65/155 (41%), Positives = 97/155 (62%), Gaps = 5/155 (3%)

Query: 3   HFSQVIDDLLDPFLRRRAGISMSLVSAWSEIVGSNIARCCRPEKIIWPNRTSIERQDISS 62
             S++ + L+DP L RRAGI+ +L+ +WSEI G + A C RPEKI W         D  S
Sbjct: 10  QISELANGLIDPVLARRAGINTALLGSWSEIAGEDFADCTRPEKIAWARGGG----DDGS 65

Query: 63  DVSGTLIIACEGSHALFLMHDQSKIIRNVNIFFGFCAIKRIRFLQRSMSIVNQAPSVSIP 122
              G L IACEG+ ALFL H Q ++I+ +N FFGF A+ +IR +Q+ +S   +  S + P
Sbjct: 66  FRPGVLTIACEGARALFLTHAQGELIQRINSFFGFAAVHQIRIVQKPVSQAVRR-SRTPP 124

Query: 123 ALEKDDCEKIDKMTEGIKDEQLKRALIRFGHAVVG 157
            L+ +   K++ M EGI+ ++L++A+ R G AV+G
Sbjct: 125 PLKGEAARKLEGMMEGIEGDKLRQAIQRLGTAVMG 159

Species: Rhizobium etli
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/156 (40%), Positives = 95/156 (60%), Gaps = 3/156 (1%)

Query: 1   MIHFSQVIDDLLDPFLRRRAGISMSLVSAWSEIVGSNIARCCRPEKIIWPNRTSIERQDI 60
           ++  ++V + ++DP L +RAGI+ +L+ +W EI G + A C RPEKI WP R   E  D 
Sbjct: 14  VVQIAEVANGIMDPVLSKRAGINTALLGSWDEIAGDDFADCTRPEKITWPRRD--EGPDR 71

Query: 61  SSDVSGTLIIACEGSHALFLMHDQSKIIRNVNIFFGFCAIKRIRFLQRSMSIVNQAPSVS 120
                G L IACEG+ ALFL H Q ++I  +N FFGF A+++IR +Q+ +S         
Sbjct: 72  GGYQPGVLTIACEGARALFLTHAQGELIARINGFFGFPAVRQIRIVQKPVSQAITRRRKP 131

Query: 121 IPALEKDDCEKIDKMTEGIKDEQLKRALIRFGHAVV 156
            P L  D  +++D M EG++ E L++A+ R G AV+
Sbjct: 132 QP-LRGDAAKRLDDMMEGLESEALRKAVERLGTAVL 166

Species: Agrobacterium tumefaciens
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  128 bits (322), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 101/169 (59%), Gaps = 17/169 (10%)

Query: 3   HFSQVIDDLLDPFLRRRAGISMSLVSAWSEIVGSNIARCCRPEKIIWPNR---------- 52
             S++ + ++DP + RRAGIS +L+S+W EI G++ A C RPEKI+WP R          
Sbjct: 10  QISELANGIIDPVIARRAGISTALLSSWDEIAGADFADCTRPEKIVWPRRDYAGQDSGQK 69

Query: 53  ----TSIERQDISSDVSGTLIIACEGSHALFLMHDQSKIIRNVNIFFGFCAIKRIRFLQR 108
               +S       S  +G L IACEG+ ALFL H Q ++I  +N FFG+ AI +IR +Q+
Sbjct: 70  SGPKSSAPAGQSGSYKAGVLTIACEGARALFLNHAQGELIARINGFFGYPAIGQIRIVQK 129

Query: 109 SMSIVNQAPSVSIPA-LEKDDCEKIDKMTEGIKDEQLKRALIRFGHAVV 156
            +S  N A     P  L+    +K+ +MTEGI+ ++LK+A+ R G AV+
Sbjct: 130 PVS--NTAKHRRGPGRLDAVQAKKLSEMTEGIESDKLKKAVERLGRAVL 176

Species: Agrobacterium vitis
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  128 bits (322), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 64/155 (41%), Positives = 96/155 (61%), Gaps = 5/155 (3%)

Query: 3   HFSQVIDDLLDPFLRRRAGISMSLVSAWSEIVGSNIARCCRPEKIIWPNRTSIERQDISS 62
             S++ + L+DP L RRAGI+ +L+ +WSEI G + A C RPEKI W         D  S
Sbjct: 28  QISELANGLIDPVLARRAGINTALLGSWSEIAGEDFADCTRPEKIAWARGGG----DDGS 83

Query: 63  DVSGTLIIACEGSHALFLMHDQSKIIRNVNIFFGFCAIKRIRFLQRSMSIVNQAPSVSIP 122
              G L IACEG+ ALFL H Q ++I+ +N FFGF A+ +IR +Q+ +S + +      P
Sbjct: 84  FRPGVLTIACEGARALFLTHAQGELIQRINSFFGFAAVHQIRIVQKPVSSLARRSRTPQP 143

Query: 123 ALEKDDCEKIDKMTEGIKDEQLKRALIRFGHAVVG 157
            L+ +   K++ M EGI+ ++L++A+ R G AV+G
Sbjct: 144 -LKGEAARKLEGMMEGIEGDKLRQAIQRLGTAVMG 177

Species: Rhizobium etli
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  127 bits (320), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 63/155 (40%), Positives = 97/155 (62%), Gaps = 5/155 (3%)

Query: 3   HFSQVIDDLLDPFLRRRAGISMSLVSAWSEIVGSNIARCCRPEKIIWPNRTSIERQDISS 62
             S++ + L+DP L RRAGI+ +L+ +WSEI G + A C RPEKI W         +   
Sbjct: 10  QISELANGLIDPVLARRAGINTALLGSWSEIAGEDFADCTRPEKIAWARGGD----ETGG 65

Query: 63  DVSGTLIIACEGSHALFLMHDQSKIIRNVNIFFGFCAIKRIRFLQRSMSIVNQAPSVSIP 122
              G L IACEG+ ALFL H Q ++I+ +N FFGF A+ +IR +Q+ +S   +  S + P
Sbjct: 66  FRPGVLTIACEGARALFLTHAQGELIQRINSFFGFAAVHQIRIVQKPVSQAIRR-SRTPP 124

Query: 123 ALEKDDCEKIDKMTEGIKDEQLKRALIRFGHAVVG 157
            L+ +   K++ M EGI++++L++A+ R G AV+G
Sbjct: 125 PLKGEAARKLEGMMEGIENDKLRQAIQRLGTAVMG 159

Species: Rhizobium leguminosarum
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  127 bits (318), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 94/159 (59%), Gaps = 8/159 (5%)

Query: 1   MIHFSQVIDDLLDPFLRRRAGISMSLVSAWSEIVGSNIARCCRPEKIIWPNRTSIERQDI 60
           ++  S+V + L+DP L +RAGI+  L+ +W EI G+  A C RPEKI WP R S    +I
Sbjct: 10  VVQISEVANGLIDPVLAKRAGINTMLLGSWDEIAGTEFADCTRPEKIAWPRRAS----EI 65

Query: 61  SSDVS---GTLIIACEGSHALFLMHDQSKIIRNVNIFFGFCAIKRIRFLQRSMSIVNQAP 117
             D     G L +ACEG+ ALFL H Q ++I+ +N FFGF AI ++R +Q+ ++     P
Sbjct: 66  GGDGGYQPGVLTVACEGARALFLTHAQGELIQRINGFFGFHAIGQLRIVQKPVA-APPKP 124

Query: 118 SVSIPALEKDDCEKIDKMTEGIKDEQLKRALIRFGHAVV 156
                 L  +   ++D M EGI+ E L+ AL R G AV+
Sbjct: 125 YRRPRPLTGEPARRLDTMVEGIESEALRSALKRLGTAVL 163

Species: Sinorhizobium fredii
Genus: Sinorhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  126 bits (317), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 60/154 (38%), Positives = 97/154 (62%), Gaps = 3/154 (1%)

Query: 3   HFSQVIDDLLDPFLRRRAGISMSLVSAWSEIVGSNIARCCRPEKIIWPNRTSIERQDISS 62
             S++ + ++DP L +RAGI+ +L+ +W EI G + A C RPEKI W  R     +    
Sbjct: 10  QISELTNGIVDPVLAKRAGINTALLGSWDEIAGEDFAECTRPEKIAWAKRVGSGEEGRYQ 69

Query: 63  DVSGTLIIACEGSHALFLMHDQSKIIRNVNIFFGFCAIKRIRFLQRSMSIVNQAPSVSIP 122
              G L IACEG+ ALFL H Q ++I+ +N FFGF A+ +IR +Q+ +S+ ++  S + P
Sbjct: 70  --PGVLTIACEGARALFLTHAQGELIQRINGFFGFHAVSQIRIVQKPVSVASRR-SRTPP 126

Query: 123 ALEKDDCEKIDKMTEGIKDEQLKRALIRFGHAVV 156
            L+ +   K++ M +GI+D++L+ A+ R G A+V
Sbjct: 127 PLKGEAARKLEGMMDGIEDDKLRAAIQRLGTAMV 160

Species: Agrobacterium tumefaciens
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 17/104 (16%)

Query: 3   HFSQVIDDLLDPFLRRRAGISMSLVSAWSEIVGSNIARCCRPEKIIWPNRTSIERQDISS 62
               ++ +LL     ++A     L+ AW EIVG  +A   RP  I               
Sbjct: 1   SLGDLLGELLKSRGLKKALALARLLQAWPEIVGPELAGHTRPVNI--------------- 45

Query: 63  DVSGTLIIACE-GSHALFLMHDQSKIIRNVNIFFGFCAIKRIRF 105
              GTL++  +  + A  L + + +++  +N   G  A++RIRF
Sbjct: 46  -RDGTLVVEVDSAAWATELRYQKPELLERLNERLGEEAVRRIRF 88

This family contains several actinomycete proteins of unknown function. Length = 88

 Score =  141 bits (357), Expect = 7e-35
 Identities = 67/153 (43%), Positives = 95/153 (62%), Gaps = 4/153 (2%)

Query: 5   SQVIDDLLDPFLRRRAGISMSLVSAWSEIVGSNIARCCRPEKIIWPNRTSIERQDISSDV 64
           + V + +LDP LR+RAGI+ +L+ +W EI G  +A   RPE+IIWP R   E        
Sbjct: 29  ADVANGILDPVLRKRAGINTALLQSWEEIAGDTLADRTRPERIIWPRRGREE----GPFQ 84

Query: 65  SGTLIIACEGSHALFLMHDQSKIIRNVNIFFGFCAIKRIRFLQRSMSIVNQAPSVSIPAL 124
            G L+IACEG+ ALFL H+  +II  VN F GF AI RIR +Q+ +    + PS   P L
Sbjct: 85  PGVLVIACEGAAALFLQHETGEIIARVNGFLGFGAIGRIRIVQKPVKAPAKRPSTRPPPL 144

Query: 125 EKDDCEKIDKMTEGIKDEQLKRALIRFGHAVVG 157
           +  + +++D M EGI+D+ L++AL R G AV+ 
Sbjct: 145 DAAEEKRLDDMMEGIEDDALRQALERLGRAVLS 177

Length = 181

Probab=99.98  E-value=4.6e-32  Score=217.80  Aligned_cols=153  Identities=43%  Similarity=0.789  Sum_probs=144.7

Q ss_pred             CCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHH
Q ss_conf             11898899999999984054688999626663108999431112133055444443334567883799993590699999
Q gi|254780478|r    2 IHFSQVIDDLLDPFLRRRAGISMSLVSAWSEIVGSNIARCCRPEKIIWPNRTSIERQDISSDVSGTLIIACEGSHALFLM   81 (161)
Q Consensus         2 ~~ls~ll~~~i~~~~~krg~~~~~l~~~W~~IVG~~~A~~~~P~ki~~~~~~~~~~~~~~~~~~g~L~i~v~~~~a~el~   81 (161)
T Consensus        26 vp~a~~a~g~ldpvL~kRaGin~allqsW~eIaG~~la~~trPerI~wpRr~~----~eg~~~pgvL~iaceG~~Al~lq  101 (181)
T COG5389          26 VPIADVANGILDPVLRKRAGINTALLQSWEEIAGDTLADRTRPERIIWPRRGR----EEGPFQPGVLVIACEGAAALFLQ  101 (181)
T ss_pred             CCHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHCHHHHHCCCCCEECCCCCCC----CCCCCCCCEEEEEECCHHHHHHH
T ss_conf             88566532534688898728678999879987351555247840011465576----55887874489972557887766


Q ss_pred             HHHHHHHHHHHHHHCHHHHHEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             98999999999862731000257785577844435545566798467999999860399989999999998886332
Q gi|254780478|r   82 HDQSKIIRNVNIFFGFCAIKRIRFLQRSMSIVNQAPSVSIPALEKDDCEKIDKMTEGIKDEQLKRALIRFGHAVVGC  158 (161)
Q Consensus        82 ~~~~~Ii~riN~~~G~~aI~~I~~~q~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~I~d~eLr~AL~rLg~~vl~~  158 (161)
T Consensus       102 H~~geii~RvngflGf~aigriRIvQkPv~~~~~r~~~r~~pL~~a~ek~l~~~~egied~aLrqAl~rLG~~vL~~  178 (181)
T COG5389         102 HETGEIIARVNGFLGFGAIGRIRIVQKPVKAPAKRPSTRPPPLDAAEEKRLDDMMEGIEDDALRQALERLGRAVLSE  178 (181)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
T ss_conf             22168999988660633001577721688776557787899988799987999870274379999999983887401

Probab=99.68  E-value=1e-16  Score=123.45  Aligned_cols=94  Identities=22%  Similarity=0.261  Sum_probs=77.0

Q ss_pred             CCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCEEEEEECC-CHHHHH
Q ss_conf             1189889999999998405468899962666310899943111213305544444333456788379999359-069999
Q gi|254780478|r    2 IHFSQVIDDLLDPFLRRRAGISMSLVSAWSEIVGSNIARCCRPEKIIWPNRTSIERQDISSDVSGTLIIACEG-SHALFL   80 (161)
Q Consensus         2 ~~ls~ll~~~i~~~~~krg~~~~~l~~~W~~IVG~~~A~~~~P~ki~~~~~~~~~~~~~~~~~~g~L~i~v~~-~~a~el   80 (161)
T Consensus        65 ~~lGa~~~rlI~~RGW~~~vA~G~V~~~W~~IVG~eIA~H~~P~s~~----------------DG~L~V~~dSTAWATQL  128 (178)
T PRK00111         65 ESLGSVLNKEIQRRGWGKDIAGGWVTSNWEELVGAKIAQHTRVEMIK----------------DKKLFITCDSTAWATNL  128 (178)
T ss_pred             CCHHHHHHHHHHHCCCCCCCCCEEHHCCCHHHHCHHHHCCCCEEEEE----------------CCEEEEEECCHHHHHHH
T ss_conf             76789999999975986564411031362366595665347315751----------------88799996888999999


Q ss_pred             HHHHHHHHHHHHHHHCHHHHHEEEEEECCCCC
Q ss_conf             99899999999986273100025778557784
Q gi|254780478|r   81 MHDQSKIIRNVNIFFGFCAIKRIRFLQRSMSI  112 (161)
Q Consensus        81 ~~~~~~Ii~riN~~~G~~aI~~I~~~q~~~~~  112 (161)
T Consensus       129 RlL~~~LL~~I~~~lG~~vV~~I~V-~GP~aP  159 (178)
T PRK00111        129 RMMQRQILQVIAEKVGPNIITELRI-FGPQAP  159 (178)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEEE-ECCCCC
T ss_conf             9999999999998838984689999-898999

Probab=99.67  E-value=2.2e-16  Score=121.46  Aligned_cols=87  Identities=30%  Similarity=0.488  Sum_probs=79.3

Q ss_pred             CHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCEEEEEECC-CHHHHHH
Q ss_conf             189889999999998405468899962666310899943111213305544444333456788379999359-0699999
Q gi|254780478|r    3 HFSQVIDDLLDPFLRRRAGISMSLVSAWSEIVGSNIARCCRPEKIIWPNRTSIERQDISSDVSGTLIIACEG-SHALFLM   81 (161)
Q Consensus         3 ~ls~ll~~~i~~~~~krg~~~~~l~~~W~~IVG~~~A~~~~P~ki~~~~~~~~~~~~~~~~~~g~L~i~v~~-~~a~el~   81 (161)
T Consensus         1 ~l~~~l~~~~~~~~~~~~~~~~~l~~~W~~ivG~~ia~~~~~~~i~----------------~g~L~v~v~s~~~~~eL~   64 (88)
T pfam05258         1 SLGDLLGELLKSRGLKKALALARLLQAWPEIVGPELAGHTRPVNIR----------------DGTLVVEVDSAAWATELR   64 (88)
T ss_pred             CHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHCHHHHHHHHHHEEE----------------CCEEEEEECCHHHHHHHH
T ss_conf             9899999999972823013688999884798799999753241166----------------899999958278999999


Q ss_pred             HHHHHHHHHHHHHHCHHHHHEEEE
Q ss_conf             989999999998627310002577
Q gi|254780478|r   82 HDQSKIIRNVNIFFGFCAIKRIRF  105 (161)
Q Consensus        82 ~~~~~Ii~riN~~~G~~aI~~I~~  105 (161)
T Consensus        65 ~~~~~Il~~ln~~~g~~~v~~I~~   88 (88)
T pfam05258        65 YQKPELLERLNERLGEEAVRRIRF   88 (88)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             989999999998859674204179

This family contains several actinomycete proteins of unknown function.

Probab=99.65  E-value=3.5e-16  Score=120.19  Aligned_cols=88  Identities=18%  Similarity=0.334  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCEEEEEECC-CHHHHHH
Q ss_conf             899999999984054----68899962666310899943111213305544444333456788379999359-0699999
Q gi|254780478|r    7 VIDDLLDPFLRRRAG----ISMSLVSAWSEIVGSNIARCCRPEKIIWPNRTSIERQDISSDVSGTLIIACEG-SHALFLM   81 (161)
Q Consensus         7 ll~~~i~~~~~krg~----~~~~l~~~W~~IVG~~~A~~~~P~ki~~~~~~~~~~~~~~~~~~g~L~i~v~~-~~a~el~   81 (161)
T Consensus        75 ~lg~~l~~li~~RGW~~~vA~G~V~~rW~~iVG~~IA~H~~P~s~~----------------dg~L~V~~dStAWATQLR  138 (187)
T PRK03195         75 PLGKAARDLAKKRGWSARVAEGTVLGQWSAVVGEQIAEHATPTALN----------------DGVLSVSAESTAWATQLR  138 (187)
T ss_pred             HHHHHHHHHHHHCCCCCCCCEECHHCCCHHHHCHHHHHCCCEEEEE----------------CCEEEEEECCHHHHHHHH
T ss_conf             7999999999976986565502052142476685556027604753----------------896899967879999999


Q ss_pred             HHHHHHHHHHHHHHCHHHHHEEEEEECCCC
Q ss_conf             989999999998627310002577855778
Q gi|254780478|r   82 HDQSKIIRNVNIFFGFCAIKRIRFLQRSMS  111 (161)
Q Consensus        82 ~~~~~Ii~riN~~~G~~aI~~I~~~q~~~~  111 (161)
T Consensus       139 ll~~qLl~ri~~~lG~gvV~~i~V-~GP~a  167 (187)
T PRK03195        139 MMQSQLLAKIAAAVGNGVVTSLKI-TGPAA  167 (187)
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEEE-ECCCC
T ss_conf             989999999998758884689999-79899

Probab=98.24  E-value=1.8e-06  Score=60.49  Aligned_cols=89  Identities=21%  Similarity=0.309  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHCH----HHHHHHHHHHHHHH----HHHHHHHCEEEEECCCCCCCCCCCCCCCCCCEEEEEECC-CHH
Q ss_conf             899999999984054----68899962666310----899943111213305544444333456788379999359-069
Q gi|254780478|r    7 VIDDLLDPFLRRRAG----ISMSLVSAWSEIVG----SNIARCCRPEKIIWPNRTSIERQDISSDVSGTLIIACEG-SHA   77 (161)
Q Consensus         7 ll~~~i~~~~~krg~----~~~~l~~~W~~IVG----~~~A~~~~P~ki~~~~~~~~~~~~~~~~~~g~L~i~v~~-~~a   77 (161)
T Consensus        78 ~lrq~l~~~~~kq~~~~~v~~~~~~~~W~~~vg~~p~~~iA~htr~~~~~----------------d~Vlsv~~d~~~Wa  141 (194)
T COG5512          78 LLRQVLLELLNKQGWSPLVALGFVLSQWREEVGWRPCPVIAEHTRPEPLR----------------DGVLSVTCDLTAWA  141 (194)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC----------------CCEEEEECCHHHHH
T ss_conf             89999999987441336676401255577752778886335778777556----------------76478845167899


Q ss_pred             HHHHHHHHHHHHHHHHHHCHHHHHEEEEEECCCC
Q ss_conf             9999989999999998627310002577855778
Q gi|254780478|r   78 LFLMHDQSKIIRNVNIFFGFCAIKRIRFLQRSMS  111 (161)
Q Consensus        78 ~el~~~~~~Ii~riN~~~G~~aI~~I~~~q~~~~  111 (161)
T Consensus       142 t~L~~r~~~Ll~~i~e~~g~~~~~~~k~~~~~~~  175 (194)
T COG5512         142 TTLRRRQAQLLACIAERVGNNPGESLKIGGPRAP  175 (194)
T ss_pred             HHHHHHHHHHHHCHHHHCCCCCCCEEEECCCCCC
T ss_conf             9999989987423075539984320044266765

Probab=96.74  E-value=0.054  Score=32.95  Aligned_cols=99  Identities=12%  Similarity=0.215  Sum_probs=72.4

Q ss_pred             HHHHCHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCC-HHHHHHHHHHHHHHHHHHH
Q ss_conf             984054688999626663108999431112133055444443334567883799993590-6999999899999999986
Q gi|254780478|r   16 LRRRAGISMSLVSAWSEIVGSNIARCCRPEKIIWPNRTSIERQDISSDVSGTLIIACEGS-HALFLMHDQSKIIRNVNIF   94 (161)
Q Consensus        16 ~~krg~~~~~l~~~W~~IVG~~~A~~~~P~ki~~~~~~~~~~~~~~~~~~g~L~i~v~~~-~a~el~~~~~~Ii~riN~~   94 (161)
T Consensus        26 IqkkalAil~iNr~lq~ilPqqlqg~~RvaN~r----------------q~~LvLEtANAsvrm~llyeQ~~lL~~lrq-   88 (162)
T COG4701          26 IQKKALAILLINRQLQDILPQQLQGQVRVANVR----------------QGNLVLETANASVRMKLLYEQLHLLTQLRQ-   88 (162)
T ss_pred             HHHHHHHHHHHHHHHHHHCHHHHCCCEEEEEEC----------------CCEEEEECCHHHHHHHHHHHHHHHHHHHHH-
T ss_conf             999989999999999986748640414563202----------------762666313099999998855999999986-


Q ss_pred             HCHHHHHEEEEEECCC-------CCCCCCCCCCCCCCCHHHHHH
Q ss_conf             2731000257785577-------844435545566798467999
Q gi|254780478|r   95 FGFCAIKRIRFLQRSM-------SIVNQAPSVSIPALEKDDCEK  131 (161)
Q Consensus        95 ~G~~aI~~I~~~q~~~-------~~~~~~~~~~~~~l~~~~~~~  131 (161)
T Consensus        89 q~fP~l~sieirINP~l~~~~~~~s~da~~~~~~~~~s~~~~h~  132 (162)
T COG4701          89 QGFPHLISIEIRINPELYRQSKITSEDARAANPRPPLSEHAAHV  132 (162)
T ss_pred             CCCCCCEEEEEEECHHHHHCCCCCCHHHHHCCCCCCCCHHHHHH
T ss_conf             23875235899988778734566535466479999987477899

Probab=90.97  E-value=0.85  Score=25.60  Aligned_cols=110  Identities=15%  Similarity=0.127  Sum_probs=68.0

Q ss_pred             HHHHHHHH--------HHHHHHHCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCHH-HHHHHHHHHHHHHHHHHHCHH
Q ss_conf             62666310--------899943111213305544444333456788379999359069-999998999999999862731
Q gi|254780478|r   28 SAWSEIVG--------SNIARCCRPEKIIWPNRTSIERQDISSDVSGTLIIACEGSHA-LFLMHDQSKIIRNVNIFFGFC   98 (161)
Q Consensus        28 ~~W~~IVG--------~~~A~~~~P~ki~~~~~~~~~~~~~~~~~~g~L~i~v~~~~a-~el~~~~~~Ii~riN~~~G~~   98 (161)
T Consensus       539 ~~W~~lV~qL~L~GlarqLAlNs~Lvs~~----------------d~~L~L~L~~~~~hL~ne~~~erL~qALse~lG~~  602 (663)
T PRK08770        539 EQWLELVTRSGLNGPSRQLAANAAFIGHR----------------DGVLRLALAPGFEYLNSERSIANLAQALAPVLGNA  602 (663)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHEEE----------------CCEEEEEECHHHHHHCCHHHHHHHHHHHHHHHCCC
T ss_conf             26999998669817999999834454236----------------89899997888787569999999999999997899


Q ss_pred             HHHEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             0002577855778444355455667984679999998603999899999999988863320
Q gi|254780478|r   99 AIKRIRFLQRSMSIVNQAPSVSIPALEKDDCEKIDKMTEGIKDEQLKRALIRFGHAVVGCS  159 (161)
Q Consensus        99 aI~~I~~~q~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~I~d~eLr~AL~rLg~~vl~~~  159 (161)
T Consensus       603 -V-~L~Ievg~~~~e--TPa~r~~r~~aErqqqAeqaL--qnDP~VQ~L~q~FgAqL~~eS  657 (663)
T PRK08770        603 -P-RIVIETGSADVE--TLHERANRQKGERQSAAETAF--MNDPTVQLLIQQQGARVVPDS  657 (663)
T ss_pred             -E-EEEEEECCCCCC--CHHHHHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHCCEECCCC
T ss_conf             -7-999987998886--999999999999999999999--629899999997299987787

 Score = 41.5 bits (96), Expect = 8e-05
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 6/30 (20%)

Query: 99  AIKRIRFLQRSMSIV--NQAPSVSIPA-LE 125
           A+K+   LQ S+ +   + AP+++I A +E
Sbjct: 21  ALKK---LQASLKLYADDSAPALAIKATME 47