254780757
glycyl-tRNA synthetase subunit alpha
GeneID in NCBI database: | 8209762 | Locus tag: | CLIBASIA_03220 |
Protein GI in NCBI database: | 254780757 | Protein Accession: | YP_003065170.1 |
Gene range: | -(509284, 510207) | Protein Length: | 307aa |
Gene description: | glycyl-tRNA synthetase subunit alpha | ||
COG prediction: | none | ||
KEGG prediction: | glyQ; glycyl-tRNA synthetase subunit alpha (EC:6.1.1.14); K01878 glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] | ||
SEED prediction: | Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) | ||
Pathway involved in KEGG: | Aminoacyl-tRNA biosynthesis [PATH:las00970] | ||
Subsystem involved in SEED: | tRNA aminoacylation, Gly | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 307 | glycyl-tRNA synthetase subunit alpha [Candidatus Liberi | |||
315121920 | 308 | glycyl-tRNA synthetase subunit alpha [Candidatus Liberi | 1 | 1e-168 | |
222085062 | 319 | glycyl-tRNA synthetase [Agrobacterium radiobacter K84] | 1 | 1e-140 | |
307309350 | 320 | glycyl-tRNA synthetase, alpha subunit [Sinorhizobium me | 1 | 1e-139 | |
15964604 | 311 | glycyl-tRNA synthetase subunit alpha [Sinorhizobium mel | 1 | 1e-139 | |
227821042 | 320 | glycyl-tRNA synthetase subunit alpha [Sinorhizobium fre | 1 | 1e-139 | |
150395688 | 320 | glycyl-tRNA synthetase subunit alpha [Sinorhizobium med | 1 | 1e-139 | |
325292021 | 320 | glycyl-tRNA synthetase alpha chain [Agrobacterium sp. H | 1 | 1e-139 | |
159184400 | 310 | glycyl-tRNA synthetase subunit alpha [Agrobacterium tum | 1 | 1e-138 | |
86356527 | 318 | glycyl-tRNA synthetase subunit alpha [Rhizobium etli CF | 1 | 1e-138 | |
218682936 | 318 | glycyl-tRNA synthetase subunit alpha [Rhizobium etli CI | 1 | 1e-138 |
>gi|315121920|ref|YP_004062409.1| glycyl-tRNA synthetase subunit alpha [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 308 | Back alignment and organism information |
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Score = 593 bits (1530), Expect = e-168, Method: Compositional matrix adjust. Identities = 277/307 (90%), Positives = 292/307 (95%) Query: 1 MAPIHNKKNDLSFQNIILTLTQYWAQQGCTILQPYDMEVGAGTFHPSTTLRALGPLSWKA 60 MAPIH+KKN SFQNI+L LT+YWA+QGCTILQPYDMEVGAGTFHPSTTLRALGPL WKA Sbjct: 1 MAPIHDKKNKTSFQNIVLILTEYWAKQGCTILQPYDMEVGAGTFHPSTTLRALGPLPWKA 60 Query: 61 AYVQPSRRPLDGRYAENPNRLQHYYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRF 120 AYVQPSRRPLDGRYA+NPNRLQHYYQFQVIIKPNPL+LQ LYIESL+AVGIDPL+HD+RF Sbjct: 61 AYVQPSRRPLDGRYAQNPNRLQHYYQFQVIIKPNPLDLQKLYIESLQAVGIDPLVHDIRF 120 Query: 121 VEDNWESPTLGAWGLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQN 180 VEDNWESPTLGAWGLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQN Sbjct: 121 VEDNWESPTLGAWGLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQN 180 Query: 181 VNSVYDIVFNAIEGQNVLYGDIFAQSEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKK 240 VNSV+DIVFN IEG+NVLYGDIFAQSEQEYSRYNFEYAN ILHNHFID EKEC LL+ Sbjct: 181 VNSVFDIVFNTIEGKNVLYGDIFAQSEQEYSRYNFEYANTNILHNHFIDHEKECQKLLEA 240 Query: 241 GIPNEHHRHHLCVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKACGEAFL 300 G PN+HH HHLCVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKACGEAFL Sbjct: 241 GAPNKHHNHHLCVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKACGEAFL 300 Query: 301 MTPNGGH 307 MT +GG+ Sbjct: 301 MTSSGGY 307 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|222085062|ref|YP_002543592.1| glycyl-tRNA synthetase [Agrobacterium radiobacter K84] Length = 319 | Back alignment and organism information |
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>gi|307309350|ref|ZP_07589013.1| glycyl-tRNA synthetase, alpha subunit [Sinorhizobium meliloti BL225C] Length = 320 | Back alignment and organism information |
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>gi|15964604|ref|NP_384957.1| glycyl-tRNA synthetase subunit alpha [Sinorhizobium meliloti 1021] Length = 311 | Back alignment and organism information |
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>gi|227821042|ref|YP_002825012.1| glycyl-tRNA synthetase subunit alpha [Sinorhizobium fredii NGR234] Length = 320 | Back alignment and organism information |
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>gi|150395688|ref|YP_001326155.1| glycyl-tRNA synthetase subunit alpha [Sinorhizobium medicae WSM419] Length = 320 | Back alignment and organism information |
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>gi|325292021|ref|YP_004277885.1| glycyl-tRNA synthetase alpha chain [Agrobacterium sp. H13-3] Length = 320 | Back alignment and organism information |
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>gi|159184400|ref|NP_353661.2| glycyl-tRNA synthetase subunit alpha [Agrobacterium tumefaciens str. C58] Length = 310 | Back alignment and organism information |
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>gi|86356527|ref|YP_468419.1| glycyl-tRNA synthetase subunit alpha [Rhizobium etli CFN 42] Length = 318 | Back alignment and organism information |
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>gi|218682936|ref|ZP_03530537.1| glycyl-tRNA synthetase subunit alpha [Rhizobium etli CIAT 894] Length = 318 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 307 | glycyl-tRNA synthetase subunit alpha [Candidatus Liberi | ||
PRK09348 | 283 | PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; V | 1e-173 | |
pfam02091 | 284 | pfam02091, tRNA-synt_2e, Glycyl-tRNA synthetase alpha s | 1e-136 | |
cd00733 | 279 | cd00733, GlyRS_alpha_core, Class II Glycyl-tRNA synthet | 1e-134 | |
PRK14908 | 1000 | PRK14908, PRK14908, glycyl-tRNA synthetase; Provisional | 1e-131 | |
TIGR00388 | 293 | TIGR00388, glyQ, glycyl-tRNA synthetase, tetrameric typ | 1e-128 | |
COG0752 | 298 | COG0752, GlyQ, Glycyl-tRNA synthetase, alpha subunit [T | 1e-147 | |
cd00768 | 211 | cd00768, class_II_aaRS-like_core, Class II tRNA amino-a | 7e-08 |
>gnl|CDD|181790 PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
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>gnl|CDD|111033 pfam02091, tRNA-synt_2e, Glycyl-tRNA synthetase alpha subunit | Back alignment and domain information |
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>gnl|CDD|29812 cd00733, GlyRS_alpha_core, Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain | Back alignment and domain information |
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>gnl|CDD|184901 PRK14908, PRK14908, glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
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>gnl|CDD|129483 TIGR00388, glyQ, glycyl-tRNA synthetase, tetrameric type, alpha subunit | Back alignment and domain information |
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>gnl|CDD|31095 COG0752, GlyQ, Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>gnl|CDD|29813 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 307 | glycyl-tRNA synthetase subunit alpha [Candidatus Liberi | ||
PRK09348 | 291 | glyQ glycyl-tRNA synthetase subunit alpha; Validated | 100.0 | |
cd00733 | 279 | GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS | 100.0 | |
pfam02091 | 284 | tRNA-synt_2e Glycyl-tRNA synthetase alpha subunit. | 100.0 | |
COG0752 | 298 | GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation | 100.0 | |
TIGR00388 | 295 | glyQ glycyl-tRNA synthetase, alpha subunit; InterPro: I | 100.0 | |
PRK13902 | 898 | alaS lanyl-tRNA synthetase; Provisional | 98.14 | |
PRK01584 | 593 | alanyl-tRNA synthetase; Provisional | 97.77 | |
PRK00252 | 864 | alaS alanyl-tRNA synthetase; Reviewed | 97.48 | |
COG0013 | 879 | AlaS Alanyl-tRNA synthetase [Translation, ribosomal str | 96.96 | |
cd00673 | 232 | AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core | 96.65 | |
cd00768 | 211 | class_II_aaRS-like_core Class II tRNA amino-acyl synthe | 97.15 | |
PRK10748 | 238 | flavin mononucleotide phosphatase; Provisional | 94.39 | |
PRK09449 | 225 | nucleotidase; Provisional | 91.34 |
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
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>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain | Back alignment and domain information |
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>pfam02091 tRNA-synt_2e Glycyl-tRNA synthetase alpha subunit | Back alignment and domain information |
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>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>TIGR00388 glyQ glycyl-tRNA synthetase, alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
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>PRK13902 alaS lanyl-tRNA synthetase; Provisional | Back alignment and domain information |
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>PRK01584 alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
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>PRK00252 alaS alanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
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>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain | Back alignment and domain information |
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>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
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>PRK10748 flavin mononucleotide phosphatase; Provisional | Back alignment and domain information |
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>PRK09449 nucleotidase; Provisional | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 307 | glycyl-tRNA synthetase subunit alpha [Candidatus Liberi | ||
1j5w_A | 298 | Crystal Structure Of Glycyl-Trna Synthetase Alpha C | 1e-138 | |
3rf1_A | 311 | The Crystal Structure Of Glycyl-Trna Synthetase Sub | 1e-138 |
>gi|22218825|pdb|1J5W|A Chain A, Crystal Structure Of Glycyl-Trna Synthetase Alpha Chain (Tm0216) From Thermotoga Maritima At 1.95 A Resolution Length = 298 | Back alignment and structure |
Score = 496 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 160/293 (54%), Positives = 204/293 (69%), Gaps = 14/293 (4%) Query: 12 SFQNIILTLTQYWAQQGCTILQPYDMEVGAGTFHPSTTLRALGPLSWKAAYVQPSRRPLD 71 Q++I L +WA +GC + QPYD EVGAGTFHP+T +L WK AYVQPSRRP D Sbjct: 14 YLQDVIXKLNDFWASKGCLLEQPYDXEVGAGTFHPATFFGSLRKGPWKVAYVQPSRRPTD 73 Query: 72 GRYAENPNRLQHYYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLG 131 GRY ENPNRLQ Y+Q+QVIIKP+P N Q LY+ESL+ +GI+ HD+RFVEDNWESPTLG Sbjct: 74 GRYGENPNRLQRYFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFVEDNWESPTLG 133 Query: 132 AWGLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVFNA 191 AWG+GWE W DG EI+QFTYFQQ+ GI I EITYGLER+A Y+Q V++VY++ +N Sbjct: 134 AWGVGWEVWLDGXEITQFTYFQQIGGISLKDIPLEITYGLERIAXYLQGVDNVYEVQWN- 192 Query: 192 IEGQNVLYGDIFAQSEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKKGIPNEHHRHHL 251 +NV YGD+F ++E+E+S +NFE AN +L HF + EKE L++K + Sbjct: 193 ---ENVKYGDVFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKNL--------- 240 Query: 252 CVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKACGEAFLMTPN 304 PAYD +K SH FNLLDARG IS ++RQ Y+ RI++ A+ FL Sbjct: 241 -YLPAYDYILKCSHTFNLLDARGAISVSQRQTYVKRIQAXARKAARVFLEVQA 292 |
>gi|329666299|pdb|3RF1|A Chain A, The Crystal Structure Of Glycyl-Trna Synthetase Subunit Alpha From Campylobacter Jejuni Subsp. Jejuni Nctc 11168 Length = 311 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 307 | glycyl-tRNA synthetase subunit alpha [Candidatus Liberi | ||
1j5w_A | 298 | Glycyl-tRNA synthetase alpha chain; structural genomics | 1e-148 | |
2ztg_A | 739 | Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthet | 3e-05 |
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1 Length = 298 | Back alignment and structure |
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Score = 519 bits (1338), Expect = e-148 Identities = 163/292 (55%), Positives = 210/292 (71%), Gaps = 14/292 (4%) Query: 11 LSFQNIILTLTQYWAQQGCTILQPYDMEVGAGTFHPSTTLRALGPLSWKAAYVQPSRRPL 70 + Q++I+ L +WA +GC + QPYDMEVGAGTFHP+T +L WK AYVQPSRRP Sbjct: 13 MYLQDVIMKLNDFWASKGCLLEQPYDMEVGAGTFHPATFFGSLRKGPWKVAYVQPSRRPT 72 Query: 71 DGRYAENPNRLQHYYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTL 130 DGRY ENPNRLQ Y+Q+QVIIKP+P N Q LY+ESL+ +GI+ HD+RFVEDNWESPTL Sbjct: 73 DGRYGENPNRLQRYFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFVEDNWESPTL 132 Query: 131 GAWGLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVFN 190 GAWG+GWE W DGMEI+QFTYFQQ+ GI I EITYGLER+AMY+Q V++VY++ +N Sbjct: 133 GAWGVGWEVWLDGMEITQFTYFQQIGGISLKDIPLEITYGLERIAMYLQGVDNVYEVQWN 192 Query: 191 AIEGQNVLYGDIFAQSEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKKGIPNEHHRHH 250 +NV YGD+F ++E+E+S +NFE AN +L HF + EKE L++K + Sbjct: 193 ----ENVKYGDVFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKNLY------- 241 Query: 251 LCVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKACGEAFLMT 302 PAYD +K SH FNLLDARG IS ++RQ Y+ RI+++A+ FL Sbjct: 242 ---LPAYDYILKCSHTFNLLDARGAISVSQRQTYVKRIQAMARKAARVFLEV 290 |
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 307 | glycyl-tRNA synthetase subunit alpha [Candidatus Liberi | ||
1j5w_A | 298 | Glycyl-tRNA synthetase alpha chain; structural genomics | 100.0 | |
2ztg_A | 739 | Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthet | 98.84 | |
2zze_A | 752 | Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2. | 98.56 | |
1yfs_A | 465 | Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-hel | 98.25 | |
3hy0_A | 441 | Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, liga | 98.13 | |
3dsq_A | 288 | Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA s | 94.71 | |
2zin_A | 291 | Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 93.49 | |
3ib6_A | 189 | Uncharacterized protein; structural genomics, unknown f | 93.28 | |
3l4g_A | 508 | Phenylalanyl-tRNA synthetase alpha chain; aminoacylatio | 91.24 | |
2du7_A | 549 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase | 90.58 |
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1 | Back alignment and structure |
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Probab=100.00 E-value=0 Score=1221.61 Aligned_cols=290 Identities=57% Similarity=1.021 Sum_probs=284.0 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCE Q ss_conf 43356777799999999999986695896116754333224857898744834401676415578876554667750011 Q gi|254780757|r 4 IHNKKNDLSFQNIILTLTQYWAQQGCTILQPYDMEVGAGTFHPSTTLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQH 83 (307) Q Consensus 4 ~~~~~~~~~fq~ii~~L~~fW~~~GC~i~qpyd~e~GAgT~hp~T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~ 83 (307) +....+.|+||+||++||+||+++||+|+||||+|||||||||+|||||||||||++|||||||||+|||||+||||||| T Consensus 6 ~~~~~~~m~fq~~i~~L~~fW~~~GC~i~qpyd~evGAgT~~P~T~lr~lgp~pw~~aYvqPsrRP~DgRYGeNPNRLq~ 85 (298) T 1j5w_A 6 IHHHHHHMYLQDVIMKLNDFWASKGCLLEQPYDMEVGAGTFHPATFFGSLRKGPWKVAYVQPSRRPTDGRYGENPNRLQR 85 (298) T ss_dssp -------CCHHHHHHHHHHHHHHTTCEECCCCSSCCSSGGGSHHHHTGGGCSSCEEEEEEEEEECCC-----CCTTCCSE T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHCE T ss_conf 33210322299999999999987796887675542464668889998631987632664246779998876789323110 Q ss_pred EEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEECCEEEHHHHHHHHHCCCCCCCC Q ss_conf 44445575798335899999999981999621717988328887001101232176887874147778998668257751 Q gi|254780757|r 84 YYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWCDGMEISQFTYFQQVCGIECSPI 163 (307) Q Consensus 84 y~QfQVilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwldGMEItQFTYFQQvGGi~c~pv 163 (307) ||||||||||||+|+|+|||+||++||||+++||||||||||||||||||||||||||||||||||||||||||++|+|| T Consensus 86 y~QfQVilKPsp~n~q~lYL~SL~~igid~~~hDIrFveDnWEsPtLGAwGlGWEVwldGMEItQFTYFQQvGGi~c~pv 165 (298) T 1j5w_A 86 YFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFVEDNWESPTLGAWGVGWEVWLDGMEITQFTYFQQIGGISLKDI 165 (298) T ss_dssp EEEEEEEEESCCSSHHHHHHHHHHHTTCCTTTSCEEEEEECCEEGGGTEEEEEEEEEETTEEEEEEEEEEEBTTBCCSSC T ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEECCEEEEEEEEEEEECCEECCCC T ss_conf 03458997789466899999999983999202144786227778761211200599988768752440311277533442 Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 45678789999999869982113320688878831106244746997776350179899999999999999999850066 Q gi|254780757|r 164 SGEITYGLERLAMYVQNVNSVYDIVFNAIEGQNVLYGDIFAQSEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKKGIP 243 (307) Q Consensus 164 ~~EiTYGLERiaMylQ~vdnvyDl~wn~~~~~~vtYGdif~q~E~E~S~YNFE~Ad~~~L~~~F~~yE~Ea~rLle~~LP 243 (307) ++||||||||||||||+|||||||+|| +++||||||+|+|+|||+||||+||+++|+++|++||+||++||+++|| T Consensus 166 ~~EiTYGLERiaMylQ~vdnv~Dl~w~----~~vtYGDif~q~E~E~S~YNFe~ad~~~L~~~F~~~E~Ea~rLle~~L~ 241 (298) T 1j5w_A 166 PLEITYGLERIAMYLQGVDNVYEVQWN----ENVKYGDVFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKNLY 241 (298) T ss_dssp CEEEEEEHHHHHHHHHTCSSGGGCEEE----TTEEHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCH T ss_pred CHHHHHHHHHHHHHHHCCCHHHCCCCC----CCCCHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 201002499999998487335030057----9974327753558999885535339999999999999999999866999 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CC Q ss_conf 53233553013828999999999878883875017889999999999999999999854516-89 Q gi|254780757|r 244 NEHHRHHLCVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKACGEAFLMTPNG-GH 307 (307) Q Consensus 244 ~~~~~~~~lvlPAYD~~LKaSH~FNLLDARGaISVTERq~YI~RIR~Lak~~A~ayl~~re~-g~ 307 (307) +||||+||||||+||||||||||||||||+||+|||+|||+||++|+++|+. |+ T Consensus 242 ----------lPAYD~~LKaSH~FNLLDARGaISVtER~~YI~RVR~LAk~~A~~y~e~r~~lgf 296 (298) T 1j5w_A 242 ----------LPAYDYILKCSHTFNLLDARGAISVSQRQTYVKRIQAMARKAARVFLEVQANENS 296 (298) T ss_dssp ----------HHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC--- T ss_pred ----------CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf ----------6669999999888888763478758999999999999999999999998875599 |
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
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>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* | Back alignment and structure |
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>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A | Back alignment and structure |
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>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, nucleotide-binding, amino acid-binding, acetylation; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* | Back alignment and structure |
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>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A | Back alignment and structure |
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>2zin_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, pyrrolysine, ATP analogue, non-natural amino acid, unnatural amino acid, ATP-binding; HET: ANP LBY; 1.79A {Methanosarcina mazei} PDB: 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* | Back alignment and structure |
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>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Listeria monocytogenes CLIP81459} | Back alignment and structure |
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>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
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>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
307 | glycyl-tRNA synthetase subunit alpha [Candidatus Liberi | |||
d1j5wa_ | 281 | d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha cha | 1e-139 |
>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]} Length = 281 | Back information, alignment and structure |
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class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) alpha chain species: Thermotoga maritima [TaxId: 2336] Score = 488 bits (1258), Expect = e-139 Identities = 163/292 (55%), Positives = 210/292 (71%), Gaps = 14/292 (4%) Query: 11 LSFQNIILTLTQYWAQQGCTILQPYDMEVGAGTFHPSTTLRALGPLSWKAAYVQPSRRPL 70 + Q++I+ L +WA +GC + QPYDMEVGAGTFHP+T +L WK AYVQPSRRP Sbjct: 1 MYLQDVIMKLNDFWASKGCLLEQPYDMEVGAGTFHPATFFGSLRKGPWKVAYVQPSRRPT 60 Query: 71 DGRYAENPNRLQHYYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTL 130 DGRY ENPNRLQ Y+Q+QVIIKP+P N Q LY+ESL+ +GI+ HD+RFVEDNWESPTL Sbjct: 61 DGRYGENPNRLQRYFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFVEDNWESPTL 120 Query: 131 GAWGLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVFN 190 GAWG+GWE W DGMEI+QFTYFQQ+ GI I EITYGLER+AMY+Q V++VY++ +N Sbjct: 121 GAWGVGWEVWLDGMEITQFTYFQQIGGISLKDIPLEITYGLERIAMYLQGVDNVYEVQWN 180 Query: 191 AIEGQNVLYGDIFAQSEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKKGIPNEHHRHH 250 +NV YGD+F ++E+E+S +NFE AN +L HF + EKE L++K + Sbjct: 181 ----ENVKYGDVFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKNLY------- 229 Query: 251 LCVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKACGEAFLMT 302 PAYD +K SH FNLLDARG IS ++RQ Y+ RI+++A+ FL Sbjct: 230 ---LPAYDYILKCSHTFNLLDARGAISVSQRQTYVKRIQAMARKAARVFLEV 278 |
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 307 | glycyl-tRNA synthetase subunit alpha [Candidatus Liberi | ||
d1j5wa_ | 281 | Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga | 100.0 | |
d1riqa2 | 236 | Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId | 98.02 |
>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) alpha chain species: Thermotoga maritima [TaxId: 2336] Probab=100.00 E-value=0 Score=1223.22 Aligned_cols=281 Identities=58% Similarity=1.037 Sum_probs=278.6 Q ss_pred CCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEE Q ss_conf 77999999999999866958961167543332248578987448344016764155788765546677500114444557 Q gi|254780757|r 11 LSFQNIILTLTQYWAQQGCTILQPYDMEVGAGTFHPSTTLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQHYYQFQVI 90 (307) Q Consensus 11 ~~fq~ii~~L~~fW~~~GC~i~qpyd~e~GAgT~hp~T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq~y~QfQVi 90 (307) |+|||||++||+||+++||+|+||||+|||||||||+||||+||||||++|||||||||+|||||+|||||||||||||| T Consensus 1 m~fq~~i~~L~~~W~~~gC~i~qpyd~evGAgT~~p~T~lr~lgp~pw~~ayvqpsrRP~DgRYg~NPNRlq~y~QfQVi 80 (281) T d1j5wa_ 1 MYLQDVIMKLNDFWASKGCLLEQPYDMEVGAGTFHPATFFGSLRKGPWKVAYVQPSRRPTDGRYGENPNRLQRYFQYQVI 80 (281) T ss_dssp CCHHHHHHHHHHHHHHTTCEECCCCSSCCSSGGGSHHHHTGGGCSSCEEEEEEEEEECCC-----CCTTCCSEEEEEEEE T ss_pred CCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHEEEE T ss_conf 96899999999999878978977765544646687588874049987532343556688654335892044345530235 Q ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEECCEEEHHHHHHHHHCCCCCCCCHHHHHHH Q ss_conf 57983358999999999819996217179883288870011012321768878741477789986682577514567878 Q gi|254780757|r 91 IKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYG 170 (307) Q Consensus 91 lKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwldGMEItQFTYFQQvGGi~c~pv~~EiTYG 170 (307) |||||+|+|+|||+||++||||+++||||||||||||||||||||||||||||||||||||||||||++|+||++||||| T Consensus 81 ~KPsp~n~q~lyL~SL~~igid~~~hDIrfvEDnWEsPtlGAwGlGWEVwldGMEItQFTYFQQvGg~~c~pv~~EiTYG 160 (281) T d1j5wa_ 81 IKPSPENSQELYLESLEYLGINLKEHDIRFVEDNWESPTLGAWGVGWEVWLDGMEITQFTYFQQIGGISLKDIPLEITYG 160 (281) T ss_dssp EESCCSSHHHHHHHHHHHTTCCTTTSCEEEEEECCEEGGGTEEEEEEEEEETTEEEEEEEEEEEBTTBCCSSCCEEEEEE T ss_pred ECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEECCEEEEEEEHHHHHCCCCCCCCCHHHHHH T ss_conf 05894128999999999819993214257873167687602102224788767366532163563683256530554432 Q ss_pred HHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 99999998699821133206888788311062447469977763501798999999999999999998500665323355 Q gi|254780757|r 171 LERLAMYVQNVNSVYDIVFNAIEGQNVLYGDIFAQSEQEYSRYNFEYANPEILHNHFIDSEKECLDLLKKGIPNEHHRHH 250 (307) Q Consensus 171 LERiaMylQ~vdnvyDl~wn~~~~~~vtYGdif~q~E~E~S~YNFE~Ad~~~L~~~F~~yE~Ea~rLle~~LP~~~~~~~ 250 (307) |||||||||+|||||||.|| +++||||||+|+|+|||+||||+||+++|+++|++||+||++|++++|| T Consensus 161 LERiaMylQ~vd~v~Dl~wn----~~vtYgDvf~q~E~E~S~YNFE~Ad~~~L~~~F~~yE~Ea~~Lle~~L~------- 229 (281) T d1j5wa_ 161 LERIAMYLQGVDNVYEVQWN----ENVKYGDVFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKNLY------- 229 (281) T ss_dssp HHHHHHHHHTCSSGGGCEEE----TTEEHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCH------- T ss_pred HHHHHHHHHCCCHHEEEECC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------- T ss_conf 89999998486404032224----8944679887769999998698731999999999999999999865998------- Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 3013828999999999878883875017889999999999999999999854516 Q gi|254780757|r 251 LCVFPAYDQCIKASHIFNLLDARGVISTTERQRYILRIRSLAKACGEAFLMTPNG 305 (307) Q Consensus 251 ~lvlPAYD~~LKaSH~FNLLDARGaISVTERq~YI~RIR~Lak~~A~ayl~~re~ 305 (307) +||||+||||||+||||||||||||||||+||+|||+|||+||++|+++|+. T Consensus 230 ---lPAYD~~LKaSH~FNLLDARGaISVTERa~YI~RIR~LAk~~a~~yle~r~n 281 (281) T d1j5wa_ 230 ---LPAYDYILKCSHTFNLLDARGAISVSQRQTYVKRIQAMARKAARVFLEVQAN 281 (281) T ss_dssp ---HHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_pred ---CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf ---5279999998878764611688548998999999999999999999986459 |
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 307 | glycyl-tRNA synthetase subunit alpha [Candidatus L | ||
1j5w_A_1-199 | 199 | (A:1-199) Glycyl-tRNA synthetase alpha chain; stru | 1e-100 | |
1j5w_A_200-298 | 99 | (A:200-298) Glycyl-tRNA synthetase alpha chain; st | 2e-35 |
>1j5w_A (A:1-199) Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima}Length = 199 | Back alignment and structure |
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Score = 357 bits (919), Expect = e-100 Identities = 120/198 (60%), Positives = 148/198 (74%), Gaps = 4/198 (2%) Query: 4 IHNKKNDLSFQNIILTLTQYWAQQGCTILQPYDMEVGAGTFHPSTTLRALGPLSWKAAYV 63 IH+ + Q++I L +WA +GC + QPYD EVGAGTFHP+T +L WK AYV Sbjct: 6 IHHHHHHXYLQDVIXKLNDFWASKGCLLEQPYDXEVGAGTFHPATFFGSLRKGPWKVAYV 65 Query: 64 QPSRRPLDGRYAENPNRLQHYYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVED 123 QPSRRP DGRY ENPNRLQ Y+Q+QVIIKP+P N Q LY+ESL+ +GI+ HD+RFVED Sbjct: 66 QPSRRPTDGRYGENPNRLQRYFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFVED 125 Query: 124 NWESPTLGAWGLGWECWCDGMEISQFTYFQQVCGIECSPISGEITYGLERLAMYVQNVNS 183 NWESPTLGAWG+GWE W DG EI+QFTYFQQ+ GI I EITYGLER+A Y+Q V++ Sbjct: 126 NWESPTLGAWGVGWEVWLDGXEITQFTYFQQIGGISLKDIPLEITYGLERIAXYLQGVDN 185 Query: 184 VYDIVFNAIEGQNVLYGD 201 VY++ +N +NV YGD Sbjct: 186 VYEVQWN----ENVKYGD 199 |
>1j5w_A (A:200-298) Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima}Length = 99 | Back alignment and structure |
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Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 307 | glycyl-tRNA synthetase subunit alpha [Candidatus Liberi | ||
1j5w_A_1-199 | 199 | Glycyl-tRNA synthetase alpha chain; structural gen | 100.0 | |
2ztg_A_1-260 | 260 | Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy | 98.01 | |
2zze_A_1-266 | 266 | Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML | 97.97 | |
1c0a_A_129-271_422-557 | 279 | Aspartyl tRNA synthetase; protein-RNA complex; HET | 97.25 | |
1yfs_A_1-237 | 237 | Alanyl-tRNA synthetase; alpha-beta fold, helix-loo | 96.93 | |
3hy0_A_1-252 | 252 | Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 96.69 | |
1l0w_A_135-278_415-546 | 276 | Aspartyl-tRNA synthetase; space-grown crystal, dim | 95.69 | |
1j5w_A_200-298 | 99 | Glycyl-tRNA synthetase alpha chain; structural gen | 100.0 |
>1j5w_A (A:1-199) Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} | Back alignment and structure |
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Probab=100.00 E-value=0 Score=856.45 Aligned_cols=195 Identities=62% Similarity=1.127 Sum_probs=191.5 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 64335677779999999999998669589611675433322485789874483440167641557887655466775001 Q gi|254780757|r 3 PIHNKKNDLSFQNIILTLTQYWAQQGCTILQPYDMEVGAGTFHPSTTLRALGPLSWKAAYVQPSRRPLDGRYAENPNRLQ 82 (307) Q Consensus 3 ~~~~~~~~~~fq~ii~~L~~fW~~~GC~i~qpyd~e~GAgT~hp~T~lr~lg~~pw~~aYvqPsrRP~DgRYGeNPNRlq 82 (307) .+..++++++||+||++||+||+++||+|+||||+|||||||||+|||||||||||++|||||||||+|||||||||||| T Consensus 5 ~~~~~~~~~~fq~~I~~Lq~fW~~~GC~i~qpyd~evGAGT~hpaTflralgpepw~~aYVqPsrRP~DgRYGeNPNRLq 84 (199) T 1j5w_A 5 KIHHHHHHXYLQDVIXKLNDFWASKGCLLEQPYDXEVGAGTFHPATFFGSLRKGPWKVAYVQPSRRPTDGRYGENPNRLQ 84 (199) T ss_dssp --------CCHHHHHHHHHHHHHHTTCEECCCCSSCCSSGGGSHHHHTGGGCSSCEEEEEEEEEECCC-----CCTTCCS T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHC T ss_conf 23321021329999999999997779688777654336465888999864198763255424677999887678930320 Q ss_pred EEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHCCCCEEEEECCEEEHHHHHHHHHCCCCCCC Q ss_conf 14444557579833589999999998199962171798832888700110123217688787414777899866825775 Q gi|254780757|r 83 HYYQFQVIIKPNPLNLQNLYIESLKAVGIDPLIHDVRFVEDNWESPTLGAWGLGWECWCDGMEISQFTYFQQVCGIECSP 162 (307) Q Consensus 83 ~y~QfQVilKPsp~niq~lYl~SL~~iGid~~~hDIrFveDnWEsPtLGAwGlGWEvwldGMEItQFTYFQQvGGi~c~p 162 (307) |||||||||||||+|||+|||+||++||||+++|||||||||||||||||||||||||||||||||||||||||||+|+| T Consensus 85 ~yyQfQViiKPsP~niq~lYL~SL~~lGid~~~hDIRFvEDnWEsPtLGAwGlGWEvwldGMEitQfTYFQqvGgi~~~p 164 (199) T 1j5w_A 85 RYFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFVEDNWESPTLGAWGVGWEVWLDGXEITQFTYFQQIGGISLKD 164 (199) T ss_dssp EEEEEEEEEESCCSSHHHHHHHHHHHTTCCTTTSCEEEEEECCEEGGGTEEEEEEEEEETTEEEEEEEEEEEBTTBCCSS T ss_pred EEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEECCEEEEEEEEEEEECCEECCC T ss_conf 01245789778947689999999998099910214478622777877011120059998876875344031027743344 Q ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCH Q ss_conf 145678789999999869982113320688878831106 Q gi|254780757|r 163 ISGEITYGLERLAMYVQNVNSVYDIVFNAIEGQNVLYGD 201 (307) Q Consensus 163 v~~EiTYGLERiaMylQ~vdnvyDl~wn~~~~~~vtYGd 201 (307) |++||||||||||||||+|||||||.|| +++|||| T Consensus 165 v~~EiTYGLERiamylQ~vd~v~dl~w~----~~~tYgd 199 (199) T 1j5w_A 165 IPLEITYGLERIAXYLQGVDNVYEVQWN----ENVKYGD 199 (199) T ss_dssp CCEEEEEEHHHHHHHHHTCSSGGGCEEE----TTEEHHH T ss_pred CCHHHHHHHHHHHHHHHCCCHHHCCCCC----CCCCHHH T ss_conf 2200001499999998387246222167----9974669 |
>2ztg_A (A:1-260) Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
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>2zze_A (A:1-266) Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* | Back alignment and structure |
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>1c0a_A (A:129-271,A:422-557) Aspartyl tRNA synthetase; protein-RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} | Back alignment and structure |
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>1yfs_A (A:1-237) Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} | Back alignment and structure |
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>3hy0_A (A:1-252) Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, nucleotide-binding, amino acid-binding, acetylation; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* | Back alignment and structure |
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>1l0w_A (A:135-278,A:415-546) Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} | Back alignment and structure |
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>1j5w_A (A:200-298) Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} | Back alignment and structure |
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