254781101
UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase
GeneID in NCBI database: | 8210126 | Locus tag: | CLIBASIA_05015 |
Protein GI in NCBI database: | 254781101 | Protein Accession: | YP_003065514.1 |
Gene range: | -(1100178, 1101596) | Protein Length: | 472aa |
Gene description: | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase | ||
COG prediction: | [M] UDP-N-acetylmuramyl pentapeptide synthase | ||
KEGG prediction: | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/D-alanyl-D -alanyl ligase; K01929 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D -alanyl-D-alanine ligase [EC:6.3.2.10] | ||
SEED prediction: | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10) | ||
Pathway involved in KEGG: | Lysine biosynthesis [PATH:las00300]
Peptidoglycan biosynthesis [PATH:las00550] | ||
Subsystem involved in SEED: | Peptidoglycan Biosynthesis | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
Identity | Alignment graph | Length | Definition | E-value | |
Target | 472 | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimel | |||
254781102 | 497 | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin | 3e-09 | ||
254781096 | 474 | UDP-N-acetylmuramate--L-alanine ligase [Candidatus | 1e-05 | ||
254780858 | 425 | NADH dehydrogenase I subunit F [Candidatus Liberib | 0.001 | ||
254781099 | 468 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 0.018 |
>gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 497 | Back alignment |
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Score = 54.7 bits (130), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 87/376 (23%), Positives = 153/376 (40%), Gaps = 42/376 (11%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-----DMVASIGSL 81 +N +S DSR I F AI G DGH FI A+ +GA +VV++ D A+I S Sbjct: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS- 88 Query: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-----IALSSIK-K 135 + P+ VD+ L+ A + I+A+TG+ GK++ + LSS + Sbjct: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 Query: 136 TYACIGSY--NNHIGV--PLTLAR----------MPVDVDFGIFELGMSHLGEIRFLTHL 181 + I S+ +N + P+ LA+ V V+ L L I+ + Sbjct: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSH 240 T + H+ + +AK +FE L K + DD++ + + ++H Sbjct: 207 -----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 G + + S G + L+K + + + ++GK + + G N L+ Sbjct: 262 NAGCR-VLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G+ + D ++ L H GR + + ++G +D ++ +N M +L Sbjct: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEM-----IL 373 Query: 361 SQISPHGEGRRIAVLG 376 I GR I V G Sbjct: 374 KNIRTITSGRIIVVFG 389 |
>gi|254781096|ref|YP_003065509.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 474 | Back alignment |
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Score = 42.4 bits (98), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 79/367 (21%), Positives = 145/367 (39%), Gaps = 39/367 (10%) Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPV 158 +A +R + +I +++G+ GKTTT ++ L K I G N G T AR+ Sbjct: 100 LAGLMRCRKSI-SVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINSYG---TNARIGT 155 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218 ++ + E S IR + +V V+T I P HL + I +A + + + Sbjct: 156 S-EWIVVEADESDGTFIRLPSDIV-----VVTNIDPEHLDYYGDFNAIRAAFYKFIDNIP 209 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 G + D L A+ + + I ++G+ AD + ++ S +S +V +QG Sbjct: 210 FYGFAVVCMDHPEVRSLIAR---IQNRKIITYGRHPQADIRYSNIRKYSGRSIFDVSVQG 266 Query: 279 ---KSMEVVHH----GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331 K + V+ IG H N ++ + L + K L+ F G +R+ Sbjct: 267 NVTKDLTVIKDLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASF---SGIKRRFT 323 Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--- 388 + D+ Y +P + + ++ + QI P R+I + LS F Sbjct: 324 LVGVWNDVHVFDD-YGHHPIEISSVLAAVRQICP----RKIIAIHQPHRYSRLSTLFDQF 378 Query: 389 -----HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSL 441 D+ + +Y+ + GF L + H +Y ++ D L I + Sbjct: 379 SSCFGDADIVLISPVYSAGEKEIPGFSSPELVKNIKLQGHPQAYYMDSFDHLVSKILAIA 438 Query: 442 VDGDVVV 448 GD ++ Sbjct: 439 EPGDFII 445 |
>gi|254780858|ref|YP_003065271.1| NADH dehydrogenase I subunit F [Candidatus Liberibacter asiaticus str. psy62] Length = 425 | Back alignment |
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Score = 36.2 bits (82), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 12/107 (11%) Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT----AIKALSVFHPKEGRGKRY 330 Q++G M+ Y + M LG +++ D T AI LSVF+ E G+ Sbjct: 297 QMRGAIMD-------YDGLKEMGSGLGTAAVIVMDRSTDIIKAIWRLSVFYKHESCGQCT 349 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 C G+ + E A K I +L ++S + EGR I LGD Sbjct: 350 PCREGTGWMMRVMERLVKGIAQ-KREIDLLYEVSKNIEGRTICALGD 395 |
>gi|254781099|ref|YP_003065512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 468 | Back alignment |
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Score = 32.3 bits (72), Expect = 0.018, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 9/125 (7%) Query: 90 DVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 +++G + R S ++ IA+TG+ GK++T +++ L K Y +IG Sbjct: 94 EIIGDIELFVRERRFSSLQSPFIAVTGTNGKSSTVALISHVLR--KNGYDV--QLGGNIG 149 Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208 +P+ F + E + LT + P I V+ I+P HL +E + Sbjct: 150 LPILNLEYFSPNRFYVIECSSYQIE----LTPTIDPSIGVLLNISPDHLDRHHTLENYVN 205 Query: 209 AKAEI 213 K +I Sbjct: 206 IKKKI 210 |
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 472 | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimel | |||
315122415 | 472 | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimel | 1 | 0.0 | |
209550178 | 477 | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimel | 1 | 1e-138 | |
116253052 | 477 | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine lig | 1 | 1e-136 | |
241205561 | 477 | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimel | 1 | 1e-135 | |
222086448 | 486 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L- lysyl- D -a | 1 | 1e-132 | |
327194626 | 479 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -ala | 1 | 1e-132 | |
190892587 | 470 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -ala | 1 | 1e-128 | |
86358454 | 470 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -ala | 1 | 1e-127 | |
325293469 | 477 | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimel | 1 | 1e-127 | |
222149140 | 477 | UDP-MurNAc-pentapeptide synthetase [Agrobacterium vitis | 1 | 1e-123 |
>gi|315122415|ref|YP_004062904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 472 | Back alignment and organism information |
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Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/472 (75%), Positives = 408/472 (86%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWTFHDLL AIQG ++G VP+ FV GISIDSRSIAP+EAFFAIKG HYDGHDF+LHA Sbjct: 1 MSNLWTFHDLLHAIQGKALGEVPEDFVQGISIDSRSIAPKEAFFAIKGDHYDGHDFVLHA 60 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 VQK A LVV+N +M+ASIG LS+PVF V+DVL ALNKLA AARLRS+A IIAITGSVGKT Sbjct: 61 VQKSACLVVINAEMMASIGPLSVPVFVVEDVLSALNKLASAARLRSQAKIIAITGSVGKT 120 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 T KEML +ALSS K + I SYNNHIGVPLTLA+MP D +FGIFELGMSHLGEIRFLTH Sbjct: 121 TAKEMLKLALSSAGKIHVSIASYNNHIGVPLTLAQMPADAEFGIFELGMSHLGEIRFLTH 180 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 LVRPHIA+ITTIAPAHL NFSGIEEIASAK+EIFEGLEKTGT+ LN DDSFFE LK KSH Sbjct: 181 LVRPHIAMITTIAPAHLGNFSGIEEIASAKSEIFEGLEKTGTVLLNRDDSFFEFLKEKSH 240 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 LGI +Y+FG+S +ADF+L +QCSE+S M VQLQGKS EVVHH +G HMAQN+L TL Sbjct: 241 LLGIYNVYTFGESIDADFRLLTLEQCSEESRMRVQLQGKSAEVVHHAVGRHMAQNILATL 300 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 GIVS+L A ++ AI+ +S+F+P++GRGKRYRCAL +GFFTLIDESYNANP SM+AAISVL Sbjct: 301 GIVSLLDASIEKAIQDISLFYPQKGRGKRYRCALKEGFFTLIDESYNANPTSMRAAISVL 360 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 SQISPHG+GRRIAVLGDM EMGE ++SFHIDLAE+L YNISHVWLSG HVLALK+ALP+ Sbjct: 361 SQISPHGKGRRIAVLGDMSEMGERAESFHIDLAEILCSYNISHVWLSGVHVLALKNALPK 420 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 +HVHY E +D LFIQSSL+DGDV+V+KSS+SCGF+ L+ LLLEEF IQ Sbjct: 421 DMHVHYRERIDDFLLFIQSSLIDGDVIVIKSSHSCGFHSLVELLLEEFTLIQ 472 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|209550178|ref|YP_002282095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 477 | Back alignment and organism information |
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Score = 494 bits (1273), Expect = e-138, Method: Compositional matrix adjust. Identities = 245/469 (52%), Positives = 330/469 (70%), Gaps = 1/469 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT D++ A+ G G +P+G + GISIDSRSIAP EAFFAIKG DGHD+ A Sbjct: 1 MSWLWTTEDMIAAMAGRPFGTLPEG-ITGISIDSRSIAPGEAFFAIKGDRVDGHDYASMA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA L+VV+ + ++G L++P+ V+DVL AL +L +A+R RSKA IIA+TGSVGKT Sbjct: 60 MANGASLLVVSEARLPAMGRLTVPMIVVEDVLAALGRLGLASRQRSKARIIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML LS K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L Sbjct: 120 TTKEMLRHVLSPSGKVHASVASFNNHWGVPLTLARMPDDTDYGVFEVGMNHPGEIRPLVE 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++RPH+A+ITTIAPAHL NF I+EIA+AKAEIFEGLE G + LN D+ F L + Sbjct: 180 MIRPHVAIITTIAPAHLGNFKNIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQ 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +LGI+ I+SFG+ A+F+L ++ E S + + + G+++EV G H+A+N L L Sbjct: 240 SLGIEHIHSFGQHAKAEFRLAEFNGADENSTLWLTIGGETLEVAIGAPGRHIAENALAAL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G+V I+ AD++ AI AL+ P++GRGKR+R ++ G FTLIDESYNANPASM+AAI++L Sbjct: 300 GVVRIVGADMEKAIAALATLKPEKGRGKRHRLSIGSGSFTLIDESYNANPASMRAAIALL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + P GRRIAVLGDM EMGE +Q H DL L I HVWL+G + ALK++LP Sbjct: 360 AASEPTSRGRRIAVLGDMLEMGEYAQKVHTDLVVPLLAAGIEHVWLAGAEMAALKESLPE 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 S+HV Y E L ++ +S+ GDV++VKSS GF +++ LL++FP Sbjct: 420 SVHVEYRENTGELTDYVLNSVAPGDVLMVKSSLGIGFGKIVAALLDKFP 468 |
Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|116253052|ref|YP_768890.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rhizobium leguminosarum bv. viciae 3841] Length = 477 | Back alignment and organism information |
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Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 242/469 (51%), Positives = 328/469 (69%), Gaps = 1/469 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT D++ + G G +P+G + GISIDSRSI P EAFFAIKG DGHD+ A Sbjct: 1 MSWLWTTEDMIAVMAGRPFGTLPEG-ITGISIDSRSITPGEAFFAIKGDRVDGHDYASMA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA L++V+ + ++G L++P+ V+DVL AL +L +A+R RS+A IIA+TGSVGKT Sbjct: 60 MANGASLLIVSEARLPAMGRLTVPMIVVEDVLAALGRLGLASRERSRARIIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML LS K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L Sbjct: 120 TTKEMLRHVLSPSGKVHASVASFNNHWGVPLTLARMPEDTDYGVFEVGMNHPGEIRPLVA 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++RP +A+ITTIAPAHL NF I+EIA+AKAEIFEGLE G + LN D+ F L + Sbjct: 180 MIRPDVAIITTIAPAHLGNFKNIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQ 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +LGI+ I+SFG+ A+F+L ++ E S + + + G+++EV G H+A+N L L Sbjct: 240 SLGIEHIHSFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVALGAPGRHIAENALAAL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G+V I+ AD+ AI+AL+ P++GRGKR+R + G FTLIDESYNANPASM+AAI++L Sbjct: 300 GVVRIVGADMQKAIEALATLRPEKGRGKRHRLVIGGGSFTLIDESYNANPASMRAAIALL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + P G GRRIAVLGDM EMGE +Q H DLA L I HVWL+G + ALK++LP Sbjct: 360 AASEPTGRGRRIAVLGDMLEMGEYAQKVHTDLAVPLLAAGIEHVWLAGAEMAALKESLPE 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 S+HV Y E L ++ +S+ GDV++VKSS GF +++ LL++FP Sbjct: 420 SVHVEYRENTSELTDYVLNSVAPGDVLMVKSSLGIGFGKIVAALLDKFP 468 |
Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|241205561|ref|YP_002976657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 477 | Back alignment and organism information |
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Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 240/469 (51%), Positives = 328/469 (69%), Gaps = 1/469 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT D++ A+ G G +P+G + GISIDSRS P AFFAIKG DGHD+ A Sbjct: 1 MSWLWTTEDMIAAMAGRPFGTLPEG-ITGISIDSRSTTPGAAFFAIKGDRVDGHDYASMA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA L+VV+ + ++G L++P+ V+DVL AL +L +A+R RSKA IIA+TGSVGKT Sbjct: 60 MANGASLLVVSEARLPAMGRLTVPMIVVEDVLAALGRLGLASRERSKARIIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML L+ K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GE+R L Sbjct: 120 TTKEMLRHVLAPSGKVHASVASFNNHWGVPLTLARMPEDTDYGVFEVGMNHPGEVRPLVA 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++RP +A+ITTIAPAHL NF I+EIA+AKAEIFEGLE G + LN D+ F L + Sbjct: 180 MIRPDVAIITTIAPAHLGNFKNIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQ 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +LGI+ I+SFG+ A+F+L ++ E S + + + G+++EV G H+A+N L L Sbjct: 240 SLGIEHIHSFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVALGAPGRHIAENALAAL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G+V I+ AD+ AI+AL+ P++GRGKR+R ++ G FTLIDESYNANPASM+AAI++L Sbjct: 300 GVVRIVGADMQKAIEALATLKPEKGRGKRHRLSIGGGSFTLIDESYNANPASMRAAIALL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + P G GRRIAVLGDM EMG+ +Q H DLA L I HVWL+G + ALK++LP Sbjct: 360 AASEPTGRGRRIAVLGDMLEMGDYAQKVHTDLAVPLLAAGIEHVWLAGAEMAALKESLPE 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469 S+HV Y E L ++ +S+ GDV++VKSS GF +++ LL++FP Sbjct: 420 SVHVEYRENTSELTDYVLNSVAPGDVLMVKSSLGIGFGKIVAALLDKFP 468 |
Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|222086448|ref|YP_002544982.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L- lysyl- D -alanyl-D-alanine synthetase protein [Agrobacterium radiobacter K84] Length = 486 | Back alignment and organism information |
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Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust. Identities = 240/475 (50%), Positives = 327/475 (68%), Gaps = 6/475 (1%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT D++ AI G S G +P+G + GISIDSRSI P EAFFAIKG DGHD+ A Sbjct: 1 MSWLWTTEDMIAAIVGRSFGAMPEG-ITGISIDSRSIKPGEAFFAIKGDRVDGHDYANLA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA ++V++ + ++G L++P VDDVL AL +L VAAR R++A IIA+TGSVGKT Sbjct: 60 MANGAAMIVISEARLPAMGRLTVPKIVVDDVLAALGRLGVAARQRTQAKIIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML LS K +A + S+NNH GVPLTLARMP D DFG+FE+GM+H EIR L Sbjct: 120 TTKEMLRRTLSPSGKVHASVASFNNHWGVPLTLARMPEDTDFGVFEIGMNHPEEIRPLAK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +V PH+A+ITTIAPAHL NF I EIA+AKAEIF+G+ G + LN D+ FE L+ + Sbjct: 180 MVEPHVAIITTIAPAHLGNFKSITEIAAAKAEIFDGVAPGGHVILNRDNDQFEFLERAAL 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 A G++ ++SFG+ AD +L ++ E S + + + G++MEV G H+A+N L L Sbjct: 240 AAGVEHVHSFGQHAKADVRLAEFNASEENSTLWLTIGGETMEVAIGAPGRHIAENALAVL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G V ++ AD+D AI AL+ ++GRG+R++ + G+FTLIDESYNANPASM+AAI++L Sbjct: 300 GTVMLVDADLDKAIDALATLQAEKGRGQRHKRVVGNGYFTLIDESYNANPASMRAAIALL 359 Query: 361 SQISPHGE-----GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415 + SP GRRIAVLGDM EMG+ +Q H +LA L I +VWL+G + AL+ Sbjct: 360 ATSSPDANVGSRAGRRIAVLGDMLEMGDYAQRVHANLAGPLLAAGIEYVWLAGPEMAALR 419 Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 DALP S++V Y E + L F+ +S+ GDV++VKSS GF +++ LL++FPA Sbjct: 420 DALPESVYVEYRENTEELAEFVLNSVAPGDVLMVKSSLGTGFGKIVTALLDKFPA 474 |
Species: Agrobacterium tumefaciens Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|327194626|gb|EGE61476.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase protein [Rhizobium etli CNPAF512] Length = 479 | Back alignment and organism information |
---|
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 244/472 (51%), Positives = 330/472 (69%), Gaps = 3/472 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M+ LWT D++ A+ G G +P+G + GISIDSRSIA EAFFAIKG DGHD+ A Sbjct: 1 MSWLWTTEDMIAAMAGRPFGALPEG-ITGISIDSRSIASGEAFFAIKGDRVDGHDYASMA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 + GA L+VV+ + ++G L++P+ V+DVL AL +L A+R RS+A IIA+TGSVGKT Sbjct: 60 MANGASLLVVSEARLPAMGRLTVPMIVVEDVLAALGRLGQASRERSRAKIIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML LS K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L Sbjct: 120 TTKEMLRHVLSPSGKVHASVASFNNHWGVPLTLARMPDDTDYGVFEVGMNHPGEIRPLVA 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 ++RP +AVITTIAPAHL NF I+EIA+AKAEIFEGLE G + LN D+ F L + Sbjct: 180 MIRPDVAVITTIAPAHLGNFKSIKEIAAAKAEIFEGLEAGGHVVLNRDNDQFNFLDRTAQ 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 +LGI+ I+SFG+ A+F+L ++ E S + + + G+++EV G H+A+N L L Sbjct: 240 SLGIENIHSFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGRHIAENALAAL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAAIS 358 G+V I+ AD++ AI AL+ P++GRGKR+R ++ G FTLIDESYNANPASM+AAI+ Sbjct: 300 GVVRIVGADLEKAIAALATLKPEKGRGKRHRLSIGSGNGSFTLIDESYNANPASMRAAIA 359 Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 +L+ P G GRRIAVLGDM EMGE ++ H DLA L I HVWL+G + ALK++L Sbjct: 360 LLAAAEPSGRGRRIAVLGDMLEMGEYAEKVHTDLAGPLLAAGIEHVWLAGADMAALKESL 419 Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 P S+HV Y E L ++ +++ GDV++VKSS GF +++ LL++FPA Sbjct: 420 PESVHVEYREKTSELTDYVLNAVAPGDVLMVKSSLGIGFGKIVAALLDKFPA 471 |
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|190892587|ref|YP_001979129.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase [Rhizobium etli CIAT 652] Length = 470 | Back alignment and organism information |
---|
Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 237/463 (51%), Positives = 323/463 (69%), Gaps = 3/463 (0%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 ++ A+ G G +P+G + GISIDSRSI EAFFAIKG DGHD+ A+ GA L+V Sbjct: 1 MIAAMAGRPFGALPEG-ITGISIDSRSITSGEAFFAIKGDRVDGHDYASMAMANGASLLV 59 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 V+ + ++G L++P+ V+DVL AL +L A+R RS+A IIA+TGSVGKTTTKEML Sbjct: 60 VSEARLPAMGRLTVPMIVVEDVLAALGRLGQASRERSRAKIIAVTGSVGKTTTKEMLRHV 119 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 LS K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L ++RP +AVI Sbjct: 120 LSPSGKVHASVASFNNHWGVPLTLARMPDDTDYGVFEVGMNHPGEIRPLVTMIRPDVAVI 179 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 TTIAPAHL NF I+EIA+AKAEIFEGLE G + LN D+ F L + +LG++ I+S Sbjct: 180 TTIAPAHLGNFKSIKEIAAAKAEIFEGLEAGGHVVLNRDNDQFNFLDRTAQSLGVEHIHS 239 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 FG+ A+F+L ++ E S + + + G+++EV G H+A+N L LG+V I+ AD Sbjct: 240 FGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGRHIAENALAALGVVRIVGAD 299 Query: 310 VDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 ++ AI AL+ P++GRGKR+R ++ G FTLIDESYNANPASM+AAI++L+ P G Sbjct: 300 LEKAIAALATLKPEKGRGKRHRLSIGSGNGSFTLIDESYNANPASMRAAIALLAAAEPTG 359 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427 GRRIAVLGDM EMGE ++ H DLA L I HVWL+G + ALK++LP S+HV Y Sbjct: 360 RGRRIAVLGDMLEMGEYAEKVHTDLAGPLLAAGIEHVWLAGADMAALKESLPESVHVEYR 419 Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 E L ++ +++ GDV++VKSS GF +++ LL++FPA Sbjct: 420 EKTSELTDYVLNAVAPGDVLMVKSSLGIGFGKIVAALLDKFPA 462 |
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|86358454|ref|YP_470346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase protein [Rhizobium etli CFN 42] Length = 470 | Back alignment and organism information |
---|
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust. Identities = 237/461 (51%), Positives = 321/461 (69%), Gaps = 3/461 (0%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 ++ A+ G G +P+G + GISIDSRSI EAFFAIKG DGHD+ A+ GA L+V Sbjct: 1 MIAAMAGRPFGTLPEG-ITGISIDSRSITSGEAFFAIKGDRVDGHDYASMAMANGASLLV 59 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129 V+ + ++G L++P+ VDDVL AL +L A+R RS A IIA+TGSVGKTTTKEML Sbjct: 60 VSEARLPAMGRLTVPMIVVDDVLAALGRLGQASRERSGAKIIAVTGSVGKTTTKEMLRHV 119 Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 LS K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L ++RP++AVI Sbjct: 120 LSPSGKVHASVASFNNHWGVPLTLARMPDDTDYGVFEVGMNHPGEIRPLVAMIRPYVAVI 179 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 TTIAPAHL NF I+EIA+AKAEIFEGLE G + LN D+ F L + +LG++ I+S Sbjct: 180 TTIAPAHLGNFKSIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQSLGVEHIHS 239 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 FG+ A+F+L ++ E S + + + G+++EV G H+A+N L LG+V I+ AD Sbjct: 240 FGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGRHIAENALAALGVVRIVGAD 299 Query: 310 VDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 ++ AI AL+ P++GRGKR+R ++ G FTLIDESYNANPASM+AAI++L+ P G Sbjct: 300 MEKAIAALATLKPEKGRGKRHRLSMGGGNGSFTLIDESYNANPASMRAAIALLAAAEPTG 359 Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427 GRRIAVLGDM EMGE ++ H DLA L I HVWL+G + ALK++LP S+HV Y Sbjct: 360 RGRRIAVLGDMLEMGEYAEKVHTDLAGPLLAAGIEHVWLAGADMAALKESLPESVHVEYR 419 Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 E L ++ +S+ GDV++VKSS GF +++ LL++F Sbjct: 420 EKTSELTEYVLNSVAPGDVLMVKSSLGIGFGKIVAALLDKF 460 |
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|325293469|ref|YP_004279333.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanine ligase [Agrobacterium sp. H13-3] Length = 477 | Back alignment and organism information |
---|
Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 237/470 (50%), Positives = 315/470 (67%), Gaps = 1/470 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 MN LWT D++ G +G +P G + GISIDSR++ EAFFAIKG DGHD+ A Sbjct: 1 MNWLWTVADMIAITAGRPVGNLPTG-ITGISIDSRTVKAGEAFFAIKGDRVDGHDYTSFA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GAGL+VV + ++G L++P+ V+DVL AL KLA+AAR R+ A IIA+TGSVGKT Sbjct: 60 VANGAGLLVVAEGKLPALGRLTVPMIVVEDVLAALGKLAIAARERTTARIIAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML AL+ + +A + S+NNH GVPLTLARMP D +FG+FE+GM+H GEIR L Sbjct: 120 TTKEMLRQALAPSGRVHAAVASFNNHWGVPLTLARMPADTEFGVFEIGMNHSGEIRPLVK 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRPH+A+ITTIAPAHL NF IEEIASAKAEIFEGLE G + LN D++ FE L+ + Sbjct: 180 MVRPHVAIITTIAPAHLGNFKNIEEIASAKAEIFEGLEDGGFVILNRDNAQFEQLEEAAQ 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 GI+ I +FG+ ADF+L ++ S S + L G++ E+ + G H+A N + L Sbjct: 240 DQGIEHILTFGQHAKADFRLADFESTSTGSTIWAILNGETSELHLNIPGRHIADNAMAVL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G V++ A++D A + L +GRG+R+R + G F LIDESYNANPASM+AAI+VL Sbjct: 300 GAVAVTGANLDRAFEVLGTLEAVKGRGQRHRLTIESGSFLLIDESYNANPASMRAAIAVL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 ++ G GRR+AVLGDM EMGE S H +LA L I HVWL+G + AL+DALP Sbjct: 360 AETETQGYGRRVAVLGDMLEMGEFSAQLHEELAGPLLAGGIEHVWLAGEAMAALRDALPD 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 S+ V + T L F + GD ++VKSS GF +++ LL+++PA Sbjct: 420 SVTVIWFPTTAELADFALQWVQPGDALMVKSSLGLGFGKIVAALLDKYPA 469 |
Species: Agrobacterium sp. H13-3 Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|222149140|ref|YP_002550097.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium vitis S4] Length = 477 | Back alignment and organism information |
---|
Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 241/472 (51%), Positives = 318/472 (67%), Gaps = 1/472 (0%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M LWT DL+ A+ G +G +P G + GISIDSRSI P EAFFAIKG DGHD+ A Sbjct: 1 MTLLWTIEDLVAAMTGRPVGTMPPG-ITGISIDSRSIQPGEAFFAIKGDRVDGHDYASIA 59 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 V GA L+VVN + ++G L++P+ VDDVL AL +LA+AAR RS+A I+A+TGSVGKT Sbjct: 60 VANGAALMVVNEAKLPALGRLTVPMIVVDDVLQALGRLAIAARARSRAKIVAVTGSVGKT 119 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 TTKEML L+ + +A + S+NNH GVPLTLARMP +G+FE+GM+H GEI L Sbjct: 120 TTKEMLRQVLAPSGEVHAAVASFNNHWGVPLTLARMPATAQYGVFEIGMNHSGEITPLVQ 179 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 +VRPH+AVITTIAPAHL NF+ ++EIA AKAEIF G+ G + LN+D+ +FE L+ K+ Sbjct: 180 MVRPHLAVITTIAPAHLGNFTSVDEIADAKAEIFSGVAANGGVLLNHDNPYFEYLEHKAQ 239 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 GI I+SFG+ A+F+L ++ +E S + G++ EVV G H+A+N + L Sbjct: 240 EAGITHIHSFGQHAKAEFRLAEFDGAAESSTAWAIIDGETREVVIAAPGRHIAENAMAAL 299 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 G +L AD+D A+ ALS P +GRG+R+R G FTLIDESYNANPASM+AAI+VL Sbjct: 300 GAARLLGADLDGAVDALSRLSPVKGRGERHRLRCASGLFTLIDESYNANPASMRAAIAVL 359 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 + P GEG RIAVLGDM EMGE S+ H DLA L I HVWL+G + AL+ LP Sbjct: 360 AAAQPRGEGHRIAVLGDMLEMGEFSEELHADLAGPLLAAGIEHVWLAGPAMAALRAQLPE 419 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472 ++ V T + L F +S+ GDVV+VKSS GF +++ LL+ +P + Sbjct: 420 TVSVASFNTAEDLAAFAVASVHGGDVVMVKSSLGIGFGKIVAALLDNYPPLD 471 |
Species: Agrobacterium vitis Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 472 | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimel | ||
PRK14093 | 479 | PRK14093, PRK14093, UDP-N-acetylmuramoylalanyl-D-glutam | 1e-123 | |
TIGR01143 | 417 | TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide--D-ala | 5e-98 | |
PRK11929 | 958 | PRK11929, PRK11929, putative bifunctional UDP-N-acetylm | 1e-79 | |
PRK11930 | 822 | PRK11930, PRK11930, putative bifunctional UDP-N-acetylm | 6e-46 | |
COG0770 | 451 | COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthas | 1e-105 | |
PRK10773 | 453 | PRK10773, murF, UDP-N-acetylmuramoyl-tripeptide--D-alan | 9e-56 | |
PRK11929 | 958 | PRK11929, PRK11929, putative bifunctional UDP-N-acetylm | 1e-28 | |
COG0769 | 475 | COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase | 2e-25 | |
TIGR01085 | 464 | TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide synthet | 2e-23 | |
PRK00139 | 460 | PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate- | 3e-23 | |
pfam08245 | 188 | pfam08245, Mur_ligase_M, Mur ligase middle domain | 1e-36 | |
PRK02472 | 447 | PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutama | 5e-10 | |
PRK14573 | 809 | PRK14573, PRK14573, bifunctional D-alanyl-alanine synth | 9e-08 | |
COG0773 | 459 | COG0773, MurC, UDP-N-acetylmuramate-alanine ligase [Cel | 2e-24 | |
PRK00421 | 461 | PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; | 4e-16 | |
COG0771 | 448 | COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate | 1e-20 | |
TIGR01087 | 433 | TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-glutama | 9e-19 | |
TIGR01082 | 448 | TIGR01082, murC, UDP-N-acetylmuramate--alanine ligase | 1e-17 | |
PRK14106 | 450 | PRK14106, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutama | 1e-11 | |
PRK01438 | 480 | PRK01438, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutama | 1e-09 | |
PRK02006 | 498 | PRK02006, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutama | 3e-06 | |
pfam01225 | 76 | pfam01225, Mur_ligase, Mur ligase family, catalytic dom | 4e-09 | |
PRK14022 | 481 | PRK14022, PRK14022, UDP-N-acetylmuramoylalanyl-D-glutam | 3e-08 | |
PRK01710 | 458 | PRK01710, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutama | 5e-08 | |
PRK01368 | 454 | PRK01368, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutama | 4e-06 | |
PRK01390 | 460 | PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutama | 8e-05 | |
PRK03815 | 401 | PRK03815, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutama | 0.001 | |
PRK04308 | 445 | PRK04308, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutama | 5e-07 | |
PRK03803 | 448 | PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutama | 7e-06 | |
PRK04663 | 438 | PRK04663, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutama | 1e-04 | |
PRK03806 | 438 | PRK03806, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutama | 2e-04 | |
pfam02875 | 87 | pfam02875, Mur_ligase_C, Mur ligase family, glutamate l | 1e-05 | |
COG0285 | 427 | COG0285, FolC, Folylpolyglutamate synthase [Coenzyme me | 0.001 | |
PRK04690 | 468 | PRK04690, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutama | 0.003 |
>gnl|CDD|184501 PRK14093, PRK14093, UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional | Back alignment and domain information |
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Score = 436 bits (1122), Expect = e-123 Identities = 203/468 (43%), Positives = 267/468 (57%), Gaps = 2/468 (0%) Query: 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62 PLWT + +A+ G +P+ V GISIDSR++AP +A+FAIKG +DGH F+ A++ Sbjct: 5 PLWTSDAMAEAMGATRSGALPRD-VTGISIDSRTLAPGDAYFAIKGDVHDGHAFVAAALK 63 Query: 63 KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 GA L VV + P+ VDDVL AL L AAR R +A +IA+TGSVGKT+T Sbjct: 64 AGAALAVVERAQRDKF-AADAPLLVVDDVLAALRDLGRAARARLEAKVIAVTGSVGKTST 122 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE L L + +T+A + S+NNH GVPL+LAR P D F +FE+GM+H GEI L +V Sbjct: 123 KEALRGVLGAQGETHASVASFNNHWGVPLSLARCPADARFAVFEIGMNHAGEIEPLVKMV 182 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 RPH+A+ITT+ P HL FSGIE IA AKAEIF GLE G LN D+ F+ L A + A Sbjct: 183 RPHVAIITTVEPVHLEFFSGIEAIADAKAEIFTGLEPGGAAVLNRDNPQFDRLAASARAA 242 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 GI I SFG + AD +L ++ S + + G + G H+A N L L Sbjct: 243 GIARIVSFGADEKADARLLDVALHADCSAVHADILGHDVTYKLGMPGRHIAMNSLAVLAA 302 Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362 + AD+ A ALS P GRG R+ + G TLIDESYNANPASM AA+ VL + Sbjct: 303 AELAGADLALAALALSQVQPAAGRGVRHTLEVGGGEATLIDESYNANPASMAAALGVLGR 362 Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 +GRRIAVLGDM E+G H LAE + I V+ G + L DAL Sbjct: 363 APVGPQGRRIAVLGDMLELGPRGPELHRGLAEAIRANAIDLVFCCGPLMRNLWDALSSGK 422 Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 Y+E L + +++ GDV++VK S ++ L + FP Sbjct: 423 RGGYAEDAAALESQVVAAIRAGDVIMVKGSLGSRMKTIVTALEKRFPG 470 |
Length = 479 |
>gnl|CDD|162224 TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | Back alignment and domain information |
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Score = 353 bits (908), Expect = 5e-98 Identities = 162/435 (37%), Positives = 227/435 (52%), Gaps = 20/435 (4%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91 DSR+I P + F A+KG +DGHDF+ A+ GA V+V+ ++ G +P VDD Sbjct: 1 TDSRAIKPGDLFIALKGERFDGHDFVEQALAAGAVAVLVDREVGPDNG---LPQILVDDT 57 Query: 92 LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151 L AL LA A R + +I ITGS GKTTTKEML LS K +A G++NN IG+PL Sbjct: 58 LEALQALASAKRAKFSGKVIGITGSSGKTTTKEMLAAILSHKYKVFATPGNFNNEIGLPL 117 Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211 TL R P D D+ + E+G SH GEI +L + +P IAVIT I PAHL F +E IA AK Sbjct: 118 TLLRAPGDHDYAVLEMGASHPGEIAYLAEIAKPDIAVITNIGPAHLEGFGSLEGIAEAKG 177 Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 EI +GL++ G +N DD F + K I SFG + DF S Sbjct: 178 EILQGLKENGIAVINADDPAFAKFAKRLPN---KAILSFGF-EGGDFSAADISY-SALGS 232 Query: 272 MEVQLQ--GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329 L G EV +G H N L + L ++ + L+ +GR + Sbjct: 233 TGFTLVAPGGEFEVSLPLLGRHNVMNALAAAALALELGIPLEEIAEGLAELKLVKGRFE- 291 Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389 + TLID++YNANP SM+AA+ L++ G++I VLGDM E+GE S+ H Sbjct: 292 ---IQTKNGLTLIDDTYNANPDSMRAALDALARFP----GKKILVLGDMAELGEYSEELH 344 Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 ++ + I V+L G + D+L H+++ D L F++ L +GDVV+V Sbjct: 345 AEVGRYANSLGIDLVFLVGEEAAVIYDSLGCKGF-HFAD-KDELLAFLKLELGEGDVVLV 402 Query: 450 KSSNSCGFYRLINLL 464 K S S +++ L Sbjct: 403 KGSRSVKLEKVVEAL 417 |
This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ. Length = 417 |
>gnl|CDD|183385 PRK11929, PRK11929, putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase; Provisional | Back alignment and domain information |
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Score = 292 bits (749), Expect = 1e-79 Identities = 139/447 (31%), Positives = 209/447 (46%), Gaps = 22/447 (4%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 +S DSRS+ E F A++G ++DGHD++ A GA VV + + +P Sbjct: 526 AGAVSTDSRSVGRGELFVALRGENFDGHDYLPQAFAAGACAAVVER----QVADVDLPQI 581 Query: 87 GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY---ACIGSY 143 VDD AL +LA A R R ++AITGS GKTTTKEM+ L++ + A G++ Sbjct: 582 VVDDTRAALGRLATAWRARFSLPVVAITGSNGKTTTKEMIAAILAAWQGEDRVLATEGNF 641 Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203 NN IGVPLTL R+ +FELGM+H GEI +L + P +A++T H + Sbjct: 642 NNEIGVPLTLLRLRAQHRAAVFELGMNHPGEIAYLAAIAAPTVALVTNAQREHQEFMHSV 701 Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 E +A AK EI L + G +N DD + + G + + FG AD K Sbjct: 702 EAVARAKGEIIAALPEDGVAVVNGDDPYTAIWAK---LAGARRVLRFGLQPGADVYAEKI 758 Query: 264 KQCSE-----QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318 + + +V S EV IG H +N L + A + L Sbjct: 759 AKDISVGEAGGTRCQVVTPAGSAEVYLPLIGEHNLRNALAAIACALAAGASLKQIRAGLE 818 Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378 F P GR +R R + +ID++YNANP SM+AAI VL+++ G R VLGDM Sbjct: 819 RFQPVAGRMQRRRLSCG---TRIIDDTYNANPDSMRAAIDVLAELP---NGPRALVLGDM 872 Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438 E+G+ + H ++ + I + G A ++D + ++ Sbjct: 873 LELGDNGPAMHREVGKYARQLGIDALITLGEAARDAAAAFGAGARGVC-ASVDEIIAALR 931 Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLL 465 +L +GD V++K S R+++ L Sbjct: 932 GALPEGDSVLIKGSRFMRLERVVDALS 958 |
Length = 958 |
>gnl|CDD|183386 PRK11930, PRK11930, putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional | Back alignment and domain information |
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Score = 180 bits (459), Expect = 6e-46 Identities = 110/467 (23%), Positives = 198/467 (42%), Gaps = 25/467 (5%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63 T + + +G ++ I DSRS+ FFA+KG DGH +I +K Sbjct: 4 TLESISGILGAEGLGDKDA-IIDQILTDSRSLSFPENTLFFALKGERNDGHRYIQELYEK 62 Query: 64 GAGLVVVNTDMVASIGSLSIPVF-GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122 G VV+ + S F V D L AL +LA R + +I ITGS GKT Sbjct: 63 GVRNFVVS-EEKHPEESYPDANFLKVKDPLKALQELAAYHRSQFDIPVIGITGSNGKTIV 121 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182 KE L LS SYN+ IGVPL++ ++ + + GIFE G+S GE+ L ++ Sbjct: 122 KEWLYQLLSPDYNIVRSPRSYNSQIGVPLSVWQLNEEHELGIFEAGISQPGEMEALQKII 181 Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242 +P I ++T I AH NF I++ K ++F+ + + + + L Sbjct: 182 KPTIGILTNIGGAHQENFRSIKQKIMEKLKLFKDCDVIIYN-GDNELISSCI---TKSNL 237 Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 +K I K A + ++ + + + +G+ I +N++ + + Sbjct: 238 TLKLISWSRKDPEAPLYIPFVEKKEDHTVISYTYKGEDFHFEIPFIDDASIENLIHCIAV 297 Query: 303 VSILTADVDTAIKALSVFHPKEGR-----GKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + L D + ++ P R G C TLI++SYN++ S+ A+ Sbjct: 298 LLYLGYSADQIQERMARLEPVAMRLEVKEGIN-NC-------TLINDSYNSDLQSLDIAL 349 Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417 L++ S ++ +L D+ + G+ + + +A+++S I + G + + Sbjct: 350 DFLNRRSQS--KKKTLILSDILQSGQSPEELYRKVAQLISKRGIDRLIGIGEEISSEASK 407 Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + T L F + ++++VK + F ++ LL Sbjct: 408 FEGTEKEFFKTTEAFLKSFAFLKFRN-ELILVKGARKFEFEQITELL 453 |
Length = 822 |
>gnl|CDD|31113 COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
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Score = 376 bits (968), Expect = e-105 Identities = 175/464 (37%), Positives = 244/464 (52%), Gaps = 14/464 (3%) Query: 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 L T +L + G +G P +G+SIDSR + P + F A+KG +DGHDFI A+ Sbjct: 2 LLTLDELADILGGALVGADPVVV-SGVSIDSRKVKPGDLFVALKGERFDGHDFIEQALAA 60 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA V+V ++ ++ + V V D L AL KLA A R + A +IAITGS GKTTTK Sbjct: 61 GAAAVLVARPVLPP--AIPLVVLLVLDTLEALGKLAKAYRQKFNAKVIAITGSNGKTTTK 118 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 EML LS+ K +A G++NN IG+PLTL R+P D ++ + E+GM+H GEI L+ + R Sbjct: 119 EMLAAILSTKGKVHATPGNFNNEIGLPLTLLRLPADTEYAVLEMGMNHPGEIAELSEIAR 178 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P IAVIT I AHL F E IA AKAEI GL G LN D+ + AK +G Sbjct: 179 PDIAVITNIGEAHLEGFGSREGIAEAKAEILAGLRPEGIAILNADNPLLKNWAAK---IG 235 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 + SFG + DF+ E S + ++G E G H N L + Sbjct: 236 NAKVLSFGLNNGGDFRATNIHLDEEGSSFTLDIEGGEAEFELPLPGRHNVTNALAAAALA 295 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 L D++ L P +GR + L TLID+SYNANP SM+AA+ +L+ + Sbjct: 296 LELGLDLEEIAAGLKELKPVKGRLEVI---LLANGKTLIDDSYNANPDSMRAALDLLAAL 352 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 + IAVLGDM E+GE S+ H ++ E I V+L G A+ +AL Sbjct: 353 PG---RKGIAVLGDMLELGEESEELHEEVGEYAVEAGIDLVFLVGELSKAIAEALGN--K 407 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 Y + L +++ L GDVV+VK S ++++ LL + Sbjct: 408 GIYFADKEELITSLKALLRKGDVVLVKGSRGMKLEKVVDALLGK 451 |
Length = 451 |
>gnl|CDD|182718 PRK10773, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed | Back alignment and domain information |
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Score = 213 bits (544), Expect = 9e-56 Identities = 127/416 (30%), Positives = 188/416 (45%), Gaps = 49/416 (11%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T L + G G ++ ++ D+R + P F A+KG +D HDF A GA Sbjct: 5 TLSQLADILNGELQGADIT--IDAVTTDTRKVTPGCLFVALKGERFDAHDFADDAKAAGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G ++V+ + + +P V D A +LA R + A ++A+TGS GKT+ KEM Sbjct: 63 GALLVSRPL-----DIDLPQLVVKDTRLAFGQLAAWVRQQVPARVVALTGSSGKTSVKEM 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 L T G+ NN IGVPLTL R+ + D+ + ELG +H GEI + L RP Sbjct: 118 TAAILRQCGNTLYTAGNLNNDIGVPLTLLRLTPEHDYAVIELGANHQGEIAYTVSLTRPE 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A++ +A AHL F + +A AK EIF GL + G +N D + + + +G K Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADSNDWLNWQ---SVIGSK 234 Query: 246 TIYSF--GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-----------IGYHM 292 T++ F + + DF + + + E H G H Sbjct: 235 TVWRFSPNAANSVDF-----------TATNIHVTSHGTEFTLHTPTGSVDVLLPLPGRHN 283 Query: 293 AQNMLMTLGIVSILTADVD---TAIKA-LSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348 N L + L V A+KA L+ GR + A Q L+D+SYNA Sbjct: 284 IANALAA----AALAMSVGATLDAVKAGLANLKAVPGRLFPIQLAEGQ---LLLDDSYNA 336 Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 N SM AA VL+++ G R+ V+GDM E+G S++ H + E I V Sbjct: 337 NVGSMTAAAQVLAEMP----GYRVMVVGDMAELGAESEACHRQVGEAAKAAGIDKV 388 |
Length = 453 |
>gnl|CDD|183385 PRK11929, PRK11929, putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase; Provisional | Back alignment and domain information |
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Score = 122 bits (309), Expect = 1e-28 Identities = 98/391 (25%), Positives = 157/391 (40%), Gaps = 38/391 (9%) Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69 LLQA+ + + +DSR + P + F A +G DG FI A+ +GA V+ Sbjct: 15 LLQALAWLRGCVAA---TADLRLDSREVQPGDLFVACRGAASDGRAFIDQALARGAAAVL 71 Query: 70 VNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLT 127 V + + + V V D+ AL +LA R + +++A+TG+ GKT+ ++L Sbjct: 72 VEAEGEDQVAAADALVLPVADLRKALGELAARWYGRPSEQLSLVAVTGTNGKTSCAQLLA 131 Query: 128 IALSSIKKTYACIGSYNNH-----IGVPLT----------LARMPVD-VDFGIFE----- 166 L+ + K IG+ I LT LARM D E Sbjct: 132 QLLTRLGKPCGSIGTLGARLDGRLIPGSLTTPDAIILHRILARMRAAGADAVAMEASSHG 191 Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 L L +R +A T + HL +++ AKA +F L G +N Sbjct: 192 LEQGRLDGLRI-------AVAGFTNLTRDHLDYHGTMQDYEEAKAALFSKLPGLGAAVIN 244 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286 DD L A G+K YS + AD Q R + + + S ++V Sbjct: 245 ADDPAAARLLAA-LPRGLKVGYSPQNAG-ADVQARDLRATAHGQVFTLATPDGSYQLVTR 302 Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR-YRCALNQGFFTLIDES 345 +G N+L+ + L + +AL+ P GR +R A QG ++D Sbjct: 303 LLGRFNVSNLLLVAAALKKLGLPLAQIARALAAVSPVPGRMERVGPTAGAQGPLVVVD-- 360 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLG 376 Y P ++ A++ L ++ GR + V G Sbjct: 361 YAHTPDALAKALTALRPVAQARNGRLVCVFG 391 |
Length = 958 |
>gnl|CDD|31112 COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
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Score = 112 bits (282), Expect = 2e-25 Identities = 93/370 (25%), Positives = 138/370 (37%), Gaps = 33/370 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 G+++DSR + + F A G DGHDFI A+ GA VVV D+ + +PV Sbjct: 10 PTGLTLDSRKVKEGDLFVAKPGTKVDGHDFIAGAIAPGAVAVVVEKDIKLAEA--GVPVI 67 Query: 87 GVDDVLGAL--NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG--- 141 V G L LA K +I +TG+ GKTTT +L L + K A IG Sbjct: 68 VVTGTNGKLTTLALAFYGLPSGKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEG 127 Query: 142 -SYNNHIGVP-----------LTLARMPVD--VDFGIFELGMSHLGEIRFLTHLVRPHIA 187 + I P L R +D + + E SH G ++ V + Sbjct: 128 DELSPGILEPTGLTTPEALDLQNLLRDLLDRGAEIAVME-VSSH-GLVQGRVEGVTFDVG 185 Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247 V T ++ HL +E +AKA +FE L +G +N DD K + Sbjct: 186 VFTNLSRDHLDYHGTMEYYGAAKAVLFESLPHSGEAVINPDDGHGLDYKERLKNALGD-Y 244 Query: 248 YSFGKSKNADFQLRKWKQCSEQSWM-EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306 ++G + + S + G E G N L + L Sbjct: 245 ITYGCDFKRPDLDYRGIEESSSGSDFVFEPSGGIGEYELPLPGLFNVYNALAAVAAALAL 304 Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366 D++ + L P GR + G ++D Y NP ++ A+ + H Sbjct: 305 GVDLEDILAGLETLKPVPGRMELVNIG---GKLVIVD--YAHNPDGLEKALRAV---RLH 356 Query: 367 GEGRRIAVLG 376 GR I V G Sbjct: 357 AAGRLIVVFG 366 |
Length = 475 |
>gnl|CDD|162196 TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide synthetase | Back alignment and domain information |
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Score = 105 bits (265), Expect = 2e-23 Identities = 99/380 (26%), Positives = 153/380 (40%), Gaps = 48/380 (12%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 V G+++DSR + P + F AIKG H DGHDFI A+ GA VVV D +PV Sbjct: 4 VTGLTLDSREVKPGDLFVAIKGTHVDGHDFIHDAIANGAVAVVVERD--VDFYVAPVPVI 61 Query: 87 GVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144 V D+ AL+ LA K +I +TG+ GKTTT ++ L + K IG+ Sbjct: 62 IVPDLRHALSSLAAAFYGHPSKKLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIG 121 Query: 145 NHIG------------------VPLTLARMPVD-VDFGIFELGMSH------LGEIRFLT 179 +G + TLA M + + E+ SH + +RF Sbjct: 122 YRLGGNDLIKNPAALTTPEALTLQSTLAEMVEAGAQYAVMEVS-SHALAQGRVRGVRFD- 179 Query: 180 HLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKA 237 AV T ++ HL +F G +E +AKA +F L +N DD + + +K Sbjct: 180 ------AAVFTNLSRDHL-DFHGTMENYFAAKASLFTELGLKRFAVINLDDEYGAQFVKR 232 Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297 + + I + D ++ E + + IG N+L Sbjct: 233 LPKDITVSAITQPADGRAQDIKITDSGYSFEGQQFTFETPAGEGHLHTPLIGRFNVYNLL 292 Query: 298 MTLGIV-SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + D++ + AL F GR + Q F ++D Y P +++ Sbjct: 293 AALATLLHLGGIDLEDIVAALEKFRGVPGRMELVD--GGQKFLVIVD--YAHTPDALE-- 346 Query: 357 ISVLSQISPHGEGRRIAVLG 376 L + H +GR I V G Sbjct: 347 -KALRTLRKHKDGRLIVVFG 365 |
A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown. Length = 464 |
>gnl|CDD|178894 PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Provisional | Back alignment and domain information |
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Score = 105 bits (264), Expect = 3e-23 Identities = 105/381 (27%), Positives = 154/381 (40%), Gaps = 70/381 (18%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 + G++ DSR + P + F A+ G DG DFI A+ GA VV D A G I V Sbjct: 15 ITGLTYDSRKVKPGDLFVALPGHKVDGRDFIAQAIANGAAAVVAEADGEAGTGVPVIIVP 74 Query: 87 GVDDVLGALNKLAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142 + L L AA K +I +TG+ GKTTT +L L + + A IG+ Sbjct: 75 DLRKALALL-----AAAFYGHPSDKLKLIGVTGTNGKTTTAYLLAQILRLLGEKTALIGT 129 Query: 143 YNNHIG---VP--LT----------LARMPVD--VDFGIFELGMSH------LGEIRFLT 179 N IG +P LT LA + VD V + E+ SH + ++F Sbjct: 130 LGNGIGGELIPSGLTTPDALDLQRLLAEL-VDAGVTYAAMEVS-SHALDQGRVDGLKF-- 185 Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 +AV T ++ HL +E+ +AKA +F L I N DD L A Sbjct: 186 -----DVAVFTNLSRDHLDYHGTMEDYLAAKARLFSELGLAAVI--NADDEVGRRLLALP 238 Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----IGYHMAQN 295 A + AD + +E G++ +V IG N Sbjct: 239 DAYAVSM-------AGADLRATD---------VEYTDSGQTFTLVTEVESPLIGRFNVSN 282 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355 +L L + L ++ A+ AL+ GR +R QG ++D Y P +++ Sbjct: 283 LLAALAALLALGVPLEDALAALAKLQGVPGRMERVDAG--QGPLVIVD--YAHTPDALEK 338 Query: 356 AISVLSQISPHGEGRRIAVLG 376 VL + PH +GR I V G Sbjct: 339 ---VLEALRPHAKGRLICVFG 356 |
Length = 460 |
>gnl|CDD|149357 pfam08245, Mur_ligase_M, Mur ligase middle domain | Back alignment and domain information |
---|
Score = 149 bits (379), Expect = 1e-36 Identities = 72/193 (37%), Positives = 93/193 (48%), Gaps = 7/193 (3%) Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIFELGMSH 171 ITG+ GKTTT E++ LS+ G+ NN IG+PL LA M D+ + EL Sbjct: 1 ITGTNGKTTTTELIAALLSAAGGVVGTGGNTNNAIGLPLLLALMERKGADYAVLELSSFG 60 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 LGE R L L +P IAVIT I+P HL +E A+AKAEIFEGL + G +N DD Sbjct: 61 LGEGR-LEGLAKPDIAVITNISPDHLDYHGTMENYAAAKAEIFEGLPEDGIAVINADD-- 117 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGY 290 L + G K I +FG AD + SE + + G +E+ G Sbjct: 118 -PELAKRLKNAGAKVI-TFGLENEADDRAANIYVSSEGGKIVLFTVPGGELEISLPLPGR 175 Query: 291 HMAQNMLMTLGIV 303 H N L L Sbjct: 176 HNVYNALAALAAA 188 |
Length = 188 |
>gnl|CDD|179428 PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
Score = 61.4 bits (150), Expect = 5e-10 Identities = 55/219 (25%), Positives = 85/219 (38%), Gaps = 24/219 (10%) Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164 S+A II ITGS GKTTT ++ L + + +IG P + +A+ D + Sbjct: 106 SEAPIIGITGSNGKTTTTTLIGEMLKAGGQH----ALLAGNIGYPASEVAQKATADDTLV 161 Query: 165 FELGMSHL-GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 EL L G RPHIAVIT I PAHL E +AK I + + + Sbjct: 162 MELSSFQLMG-----IETFRPHIAVITNIYPAHLDYHGTFENYVAAKWNIQKNQTEDDYL 216 Query: 224 FLNYDDSFFELLKAKSHALGIKTIY-SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282 +N+D E +K + + S + + + + + K M Sbjct: 217 VINFDQ---EEVKELAKQTKATVVPFSTTEKVEDGAYI-------KDGALYFK-GEKIMA 265 Query: 283 VVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + G H +N L + +L + + LS F Sbjct: 266 ADDIVLPGSHNLENALAAIAAAKLLGVSNEAIREVLSTF 304 |
Length = 447 |
>gnl|CDD|184752 PRK14573, PRK14573, bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
---|
Score = 53.7 bits (129), Expect = 9e-08 Identities = 56/223 (25%), Positives = 87/223 (39%), Gaps = 24/223 (10%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT--YACIGSYNNHIGVPLTLARMPVD 159 A L + I ++GS GKTT ++T KK YA IG N L Sbjct: 98 AELMQEQISILVSGSHGKTTVSSLITAIFQEAKKDPSYA-IGGLNQ-----EGLNGYSGS 151 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLE 218 ++ + E S G ++ T P +VIT I HLSNF G E + ++ + ++ Sbjct: 152 SEYFVAEADESD-GSLKHYT----PEFSVITNIDNEHLSNFEGDRELLLASIQDFARKVQ 206 Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 + F N D + K G S+G S + D + + Q +S+ + G Sbjct: 207 QINKCFYNGDCP-----RLKGCLQGH----SYGFSSSCDLHILSYYQEGWRSYFSAKFLG 257 Query: 279 KSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + + + +G H N +GI L D AL F Sbjct: 258 VVYQDIELNLVGMHNVANAAAAMGIALTLGIDEGAIRNALKGF 300 |
Length = 809 |
>gnl|CDD|31116 COG0773, MurC, UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
---|
Score = 109 bits (274), Expect = 2e-24 Identities = 93/426 (21%), Positives = 161/426 (37%), Gaps = 56/426 (13%) Query: 45 AIKGPHYDGHDFILHAVQKGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKL 98 A+ + GHD A +VVV+ + + + IPV ++L L Sbjct: 50 ALGIEIFIGHD---AENILDADVVVVSNAIKEDNPEIVAALERGIPVISRAEMLAEL--- 103 Query: 99 AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK--TYACIGSYNNHIGVPLTLARM 156 +R + T IA+ G+ GKTTT ML L + T+ IG + G T AR+ Sbjct: 104 -----MRFR-TSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFL-IGGILKNFG---TNARL 153 Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 D+ + E S H P +A++T I HL + +E I A Sbjct: 154 G-SGDYFVAEADESD----SSFLHY-NPRVAIVTNIEFDHLDYYGDLEAIKQAFHHFVRN 207 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 + G + DD L+ + ++G AD++ +Q + +V Sbjct: 208 VPFYGRAVVCGDD---PNLRELLSRGCWSPVVTYGFDDEADWRAENIRQDGSGTTFDVLF 264 Query: 277 QGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 +G+ + V + G H N L + + L D + +AL+ F +G +R+ Sbjct: 265 RGEELGEVKLPLPGRHNVLNALAAIAVARELGIDPEAIAEALASF---QGVKRRFELKGE 321 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD------MCEMGELSQSF- 388 T+ID+ Y +P +KA ++ Q P G R +AV + + +++ Sbjct: 322 VNGVTVIDD-YAHHPTEIKATLAAARQKVPGG-KRIVAVFQPHRYSRTRDLLDDFAKALS 379 Query: 389 HIDLAEVLSLY-----NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 D +L +Y I L + + + HV + D L + Sbjct: 380 DADEVILLDVYAAGEEPIEGDV----SSEDLAEKIRQPGHVDVPDLDD-LVELLAKVAQP 434 Query: 444 GDVVVV 449 GDV++ Sbjct: 435 GDVILF 440 |
Length = 459 |
>gnl|CDD|179018 PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
---|
Score = 81.3 bits (202), Expect = 4e-16 Identities = 101/419 (24%), Positives = 161/419 (38%), Gaps = 78/419 (18%) Query: 63 KGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115 K A +VV N ++VA+ L IPV ++L L +R + T IA+ G Sbjct: 65 KDADVVVYSSAIPDDNPELVAAR-ELGIPVVRRAEMLAEL--------MRFR-TSIAVAG 114 Query: 116 SVGKTTTKEMLTIALSSIKK--TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS--H 171 + GKTTT +L L+ T+ IG N G T AR+ + D+ + E S Sbjct: 115 THGKTTTTSLLAHVLAEAGLDPTFL-IGGILNAAG---TNARLG-NSDYFVAEADESDRS 169 Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 FL L P IA++T I HL + E++ A E L G + DD Sbjct: 170 -----FL-KL-HPDIAIVTNIDADHLDYYGDFEDLKDAFQEFAHNLPFYGALVACGDDPE 222 Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGY 290 L + + + ++G S++ADF+ +Q + +V +G+ + G Sbjct: 223 LRELLPRVS----RPVITYGFSEDADFRAENIRQDGGGTHFDVLRRGEVLGDFTLPLPGR 278 Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 H N L + + L D + +AL+ F +G +R+ G LID+ Y +P Sbjct: 279 HNVLNALAAIAVALELGIDDEAIREALATF---KGVKRRFEEKGEVGGVVLIDD-YAHHP 334 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--H-----IDLAE--VLSLYNI 401 +KA + Q P R +AV F H DL + +L + Sbjct: 335 TEIKATLKAARQGYPD--KRIVAV-------------FQPHRYSRTRDLLDEFAEALSDA 379 Query: 402 SHVWLS-----------GFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVV 448 V L G L + R + ++ L + L GD+V+ Sbjct: 380 DEVILLDIYAAGEEPIGGVDSEDLARKIKRGHRDPIFVPDLEDLAELLAEVLKPGDLVL 438 |
Length = 461 |
>gnl|CDD|31114 COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
---|
Score = 96.9 bits (241), Expect = 1e-20 Identities = 89/357 (24%), Positives = 134/357 (37%), Gaps = 38/357 (10%) Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVD 159 RL +A I+AITG+ GKTTT ++ L + G+ IG P L L Sbjct: 103 FYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGN----IGTPALELLEQAEP 158 Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219 D + EL L T +RP IAVI I+ HL +E A+AK I EG + Sbjct: 159 ADVYVLELSSFQL----ETTSSLRPEIAVILNISEDHLDRHGSMENYAAAKLRILEG--Q 212 Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279 T +N DD LK + + F + E L Sbjct: 213 TEVAVINADD---AYLKTLADEATKARVIWFSFGEPLADGDY-IYDGKLVFKGEKLLPAD 268 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 +++ G H +N L L + L + ++ALS F R + F Sbjct: 269 ELKLP----GAHNLENALAALALARALGVPPEAILEALSSFTGLPHRLEFVGEKDGVLF- 323 Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 I++S N + AA+S +G I + G + + S LAE+L+ Sbjct: 324 --INDSKATNVDATLAALSGF-------DGPVILIAGGDDKGADFS-----PLAEILAKV 369 Query: 400 NISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455 I + L G + AL + ET++ + GDVV++ S +C Sbjct: 370 -IKKLVLIGEDAEKIAAALKEAGPSLVICETLEEAVQLARELAQPGDVVLL--SPAC 423 |
Length = 448 |
>gnl|CDD|162197 TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
---|
Score = 90.5 bits (225), Expect = 9e-19 Identities = 79/355 (22%), Positives = 131/355 (36%), Gaps = 45/355 (12%) Query: 98 LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVP-LTLAR 155 + + RL ++AITG+ GKTTT +L L + K + +IG P L + Sbjct: 93 IELFLRL-VPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLG-----GNIGTPALEVLD 146 Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 + + EL L T +RP IA+I I+ HL E+ +AK +IF Sbjct: 147 QE-GAELYVLELSSFQL----ETTESLRPEIALILNISEDHLDWHGSFEDYVAAKLKIFA 201 Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275 + LN DD F L KS A + F K+A+ L + Sbjct: 202 RQTEGDVAVLNADDPRFARLAQKSKA----QVIWFSVEKDAERGL---CIRDGGLY---- 250 Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335 L+ +E G H A+N+L + + L +++ ++AL F R + Sbjct: 251 LKPNDLEGSLL--GLHNAENILAAIALAKSLGLNLEAILEALRSFKGLPHRLEYVGQKNG 308 Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL-GDMCEMGELSQSFHIDLAE 394 F ++S N + AA+S + ++ G + + S LA Sbjct: 309 VHF---YNDSKATNVHATLAALSAF--------DNPVILIVGGDDKGADFS-----PLAP 352 Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVV 448 + V G + L + Y E+++ + GDVV+ Sbjct: 353 AAAGKVK-AVLAIGEDAAKIAPLLKEAGLSVYLVESLEEAVQAAREVASPGDVVL 406 |
Length = 433 |
>gnl|CDD|162195 TIGR01082, murC, UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
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Score = 86.6 bits (215), Expect = 1e-17 Identities = 81/385 (21%), Positives = 145/385 (37%), Gaps = 53/385 (13%) Query: 83 IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-TYACIG 141 IPV ++L L + IA+ G+ GKTTT M+ + L +G Sbjct: 83 IPVIRRAEMLAELMR---------FRHSIAVAGTHGKTTTTAMIAVILKEAGLDPTVVVG 133 Query: 142 SY------NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 N +G ++ + E S HL +P++A++T I P Sbjct: 134 GLVKEAGTNARLGSG----------EYLVAEADESD----ASFLHL-QPNVAIVTNIEPD 178 Query: 196 HLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254 HL + S E + +A + L G + DD L K+ + I G + Sbjct: 179 HLDTYGSSFERLKAAFEKFIHNLPFYGLAVICADDPVLRELVPKAT---EQVITYGGSGE 235 Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQNMLMTLGIVSILTADVDTA 313 +AD++ +Q + V+ +GK + G H N L + + L D + Sbjct: 236 DADYRAENIQQSGAEGKFSVRGKGKLYLEFTLNLPGRHNVLNALAAIAVALELGIDFEAI 295 Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 ++AL+ F G +R+ G LID+ Y +P +KA + Q P +RI Sbjct: 296 LRALANFQ---GVKRRFEILGEFGGVLLIDD-YAHHPTEIKATLKAARQGYPD---KRIV 348 Query: 374 VL-------GDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDAL--PRSIH 423 V+ + ++ D +L +Y ++G +L + I Sbjct: 349 VVFQPHRYSRTRDLFDDFAKVLSDADELILLDIYAAGEEPINGIDGKSLARKITQLGKIE 408 Query: 424 VHYSETMDGLFLFIQSSLVDGDVVV 448 ++ + L F+ + L GD+++ Sbjct: 409 PYFVPDLAELVEFLAAVLQSGDLIL 433 |
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. Length = 448 |
>gnl|CDD|184511 PRK14106, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
Score = 66.5 bits (163), Expect = 1e-11 Identities = 59/189 (31%), Positives = 80/189 (42%), Gaps = 33/189 (17%) Query: 63 KGAGLVVVN------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 +G LVVV+ + V I V G ++ +A R SKA I+AITG+ Sbjct: 67 EGVDLVVVSPGVPLDSPPVVQAHKKGIEVIG---------EVELAYRF-SKAPIVAITGT 116 Query: 117 VGKTTTKEML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS--HLG 173 GKTTT +L I ++ +KT +IG PL A D I +S L Sbjct: 117 NGKTTTTTLLGEIFKNAGRKTLVA-----GNIGYPLIDAVEEYGED-DIIVAEVSSFQLE 170 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD---- 229 I+ +P + I I P HL +E AKA IFE + LNYDD Sbjct: 171 TIKEF----KPKVGCILNITPDHLDRHKTMENYIKAKARIFENQRPSDYTVLNYDDPRTR 226 Query: 230 SFFELLKAK 238 S + KA+ Sbjct: 227 SLAKKAKAR 235 |
Length = 450 |
>gnl|CDD|179297 PRK01438, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
Score = 60.1 bits (146), Expect = 1e-09 Identities = 56/176 (31%), Positives = 77/176 (43%), Gaps = 29/176 (16%) Query: 64 GAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK---ATIIAIT 114 LVV + ++A+ IPV+G +V +A RLR A +A+T Sbjct: 78 DTDLVVTSPGWRPDAPLLAAAADAGIPVWG--EV-------ELAWRLRDPDRPAPWLAVT 128 Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLG 173 G+ GKTTT +ML L + A +G+ IG P+ A R P D EL L Sbjct: 129 GTNGKTTTVQMLASMLRAAGLRAAAVGN----IGTPVLDAVRDPEGYDVLAVELSSFQL- 183 Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229 + V PH A + +AP HL +E A+AKA I+EG T N D Sbjct: 184 ---HWSPSVSPHSAAVLNLAPDHLDWHGSMEAYAAAKARIYEG--TTVACVYNVAD 234 |
Length = 480 |
>gnl|CDD|179359 PRK02006, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
Score = 48.9 bits (117), Expect = 3e-06 Identities = 56/207 (27%), Positives = 80/207 (38%), Gaps = 31/207 (14%) Query: 35 RSIAPQEAFFAIKGPH----YDGHDFILHAVQKGAGLVVVNT-DMVASIGSLSIPVFGVD 89 R+ P F GP DG D + A+ G + +VA+ IPV+G Sbjct: 49 RAELPDAEFVG--GPFDPALLDGVDLV--ALSPGLSPLEAALAPLVAAARERGIPVWGEI 104 Query: 90 DVLG-ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148 ++ AL L + ++AITG+ GKTTT + + K A G+ I Sbjct: 105 ELFAQALAALGASGY---APKVLAITGTNGKTTTTALTGLLCERAGKKVAVAGN----IS 157 Query: 149 VPLTLARMPVDVDFG------IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202 P L ++ +D G + EL L TH + P A + I HL Sbjct: 158 -PAALDKLMEAIDAGALPDVWVLELSSFQLET----THTLAPDAATVLNITQDHLDWHGS 212 Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDD 229 + A+AKA IF LN DD Sbjct: 213 MAAYAAAKARIFGP---RTVRVLNRDD 236 |
Length = 498 |
>gnl|CDD|144716 pfam01225, Mur_ligase, Mur ligase family, catalytic domain | Back alignment and domain information |
---|
Score = 58.3 bits (142), Expect = 4e-09 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86 ++ I IDSR ++P F A+KG DG DF A+ GA VV + + + +P Sbjct: 2 IHFIGIDSRGMSPGALFLALKGYRVDGSDFAESAIALGAVAVVSSA--IPRDPNPEVPGI 59 Query: 87 GVDDVLGALNKLA 99 V D AL +LA Sbjct: 60 PVIDRREALAELA 72 |
This family contains a number of related ligase enzymes which have EC numbers 6.3.2.*. This family includes: MurC, MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure and MurF catalyse consecutive steps in the synthesis of peptidoglycan. Peptidoglycan consists of a sheet of two sugar derivatives, with one of these N-acetylmuramic acid attaching to a small pentapeptide. The pentapeptide is is made of L-alanine, D-glutamic acid, Meso-diaminopimelic acid and D-alanyl alanine. The peptide moiety is synthesized by successively adding these amino acids to UDP-N-acetylmuramic acid. MurC transfers the L-alanine, MurD transfers the D-glutamate, MurE transfers the diaminopimelic acid, and MurF transfers the D-alanyl alanine. This family also includes Folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate. Length = 76 |
>gnl|CDD|184459 PRK14022, PRK14022, UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional | Back alignment and domain information |
---|
Score = 55.4 bits (134), Expect = 3e-08 Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 9/127 (7%) Query: 14 IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73 Q H + IS DSR+ FFA Y H F+ +A+ +G L V D Sbjct: 21 DQDHYHYNYSGVQFDDISYDSRTADEGTLFFAKGA--YFKHKFLQNAITQGLKLYVSEKD 78 Query: 74 MVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALS 131 + IP V D+ A++ +A+ + K ++A TG+ GKTT L Sbjct: 79 Y-----EVGIPQVIVPDIKKAMSLIAMEFYDNPQHKLKLLAFTGTKGKTTAAYFAYHILK 133 Query: 132 SIKKTYA 138 + K Sbjct: 134 QLHKPAM 140 |
Length = 481 |
>gnl|CDD|179323 PRK01710, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
Score = 54.7 bits (132), Expect = 5e-08 Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 18/128 (14%) Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKT--YAC-IGSYNNHIGVPL--TLARMPVDVD 161 A + +TGS GKTTT T + + K Y +G +IG PL + + + D Sbjct: 116 PAKVFGVTGSDGKTTT----TTLIYEMLKEEGYKTWVGG---NIGTPLFSNIEEIKEE-D 167 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + EL L +T V P +AV+T ++P HL +EE AK IF+ + Sbjct: 168 KVVLELSSFQL-----MTMDVSPEVAVVTNLSPNHLDVHKDMEEYIDAKKNIFKYQSEND 222 Query: 222 TIFLNYDD 229 + LN D+ Sbjct: 223 LLVLNKDN 230 |
Length = 458 |
>gnl|CDD|179286 PRK01368, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
Score = 48.3 bits (115), Expect = 4e-06 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 10/121 (8%) Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170 IAITG+ GK+TT +++ L+S Y G+ IGVP A+ D + EL Sbjct: 107 IAITGTNGKSTTTALISHILNSNGLDYPVAGN----IGVPALQAK--ASKDGYVLELSSF 160 Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230 L ++ T IAV+ I P HL ++ +AK++IF+ ++K +N D+ Sbjct: 161 QLDLVKTFT----AKIAVLLNITPDHLDRHQDMDGYIAAKSKIFDRMDKDSYAVINIDND 216 Query: 231 F 231 + Sbjct: 217 Y 217 |
Length = 454 |
>gnl|CDD|179291 PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
Score = 44.1 bits (105), Expect = 8e-05 Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 17/134 (12%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDV 160 A IAITG+ GK+TT ++ L + G+ IG LTL P Sbjct: 108 RAHAPDAPFIAITGTNGKSTTTALIAHILREAGRDVQMGGN----IGTAVLTLEPPPAG- 162 Query: 161 DFGIFELGMSHLGEIRF---LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 ++ L +S + L + P + V+ + P HL +E A+AK +F G Sbjct: 163 --RVYVLELS-----SYQIDLAPSLDPDVGVLLNLTPDHLDRHGTMEGYAAAKERLFAGQ 215 Query: 218 EKTGTIFLNYDDSF 231 T + DD++ Sbjct: 216 GP-DTAVIGVDDAY 228 |
Length = 460 |
>gnl|CDD|179652 PRK03815, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
Score = 40.0 bits (94), Expect = 0.001 Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 12/102 (11%) Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168 I I+G+ GKTTT +M T L A G +IG P LA + + + E Sbjct: 90 FSIWISGTNGKTTTTQMTTHLLEDFG---AVSGG---NIGTP--LAELDKNAKIWVLETS 141 Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210 L T+ +P+I ++ I P HLS E AK Sbjct: 142 SFTL----HYTNKAKPNIYLLLPITPDHLSWHGSFENYVKAK 179 |
Length = 401 |
>gnl|CDD|167786 PRK04308, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
Score = 51.4 bits (123), Expect = 5e-07 Identities = 75/305 (24%), Positives = 115/305 (37%), Gaps = 45/305 (14%) Query: 90 DVLGALNKLAVA-ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI-----GSY 143 VLG + LA R K +IAITGS GKTT ++ Y CI Sbjct: 93 RVLGDIELLADIVNRRGDK--VIAITGSNGKTTVTSLVG---------YLCIKCGLDTVI 141 Query: 144 NNHIGVPL---TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200 +IG P+ L R D + EL L T +RP A + I+ HL + Sbjct: 142 AGNIGTPVLEAELQREGKKADVWVLELSSFQLEN----TESLRPTAATVLNISEDHLDRY 197 Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 + + A KA+IF G G LN DD+F +K + F ADF L Sbjct: 198 DDLLDYAHTKAKIFRG---DGVQVLNADDAFCRAMKRAGR-----EVKWFSLEHEADFWL 249 Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 + +Q E + + + + G H A N++ + + + + ++ + F Sbjct: 250 ERETGRLKQG-NEDLIATQDIPLQ----GLHNAANVMAAVALCEAVGLPREALLEHVKTF 304 Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ-----ISPHGEGRRIAVL 375 +G R + ID+S N + AAI+ L + G+G+ L Sbjct: 305 ---QGLPHRVEKIGEKNGVVFIDDSKGTNVGATAAAIAGLQNPLFVILGGMGKGQDFTPL 361 Query: 376 GDMCE 380 D Sbjct: 362 RDALA 366 |
Length = 445 |
>gnl|CDD|179650 PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
Score = 47.6 bits (114), Expect = 7e-06 Identities = 68/287 (23%), Positives = 106/287 (36%), Gaps = 58/287 (20%) Query: 107 KATIIAITGSVGKTTTK----EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162 KA +IAITGS GK+T EM A K A G+ IG P L + D + Sbjct: 107 KAPVIAITGSNGKSTVTTLVGEMAKAA----GKRVAVGGN----IGTP-ALDLLSDDPEL 157 Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222 + EL L TH + +A + I+ H+ +S +E AK I+ G Sbjct: 158 YVLELSSFQLE----TTHSLNAEVATVLNISEDHMDRYSDLEAYHQAKHRIYRG---AKQ 210 Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--NADFQLR-----KWKQCSEQSWM--- 272 + N DD+ L + + SFG + ++ LR + + M Sbjct: 211 VVFNRDDALTRPLVPDN-----QPCLSFGLNAPDFDEWGLREGDGETYLAHGFERLMPVR 265 Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 E++L+G H N L L + + ++ L F G +RC Sbjct: 266 ELKLRGS-----------HNLANALAALALGEAAGLPKEAMLEVLRTF-----TGLPHRC 309 Query: 333 ---ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 G ++S N + AAI L H +G+ + + G Sbjct: 310 EWVREVAG-VDYYNDSKGTNVGATVAAIEGLGA---HIQGKLVLIAG 352 |
Length = 448 |
>gnl|CDD|179871 PRK04663, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
Score = 43.6 bits (103), Expect = 1e-04 Identities = 70/265 (26%), Positives = 106/265 (40%), Gaps = 47/265 (17%) Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 +IAITGS GK+T + LT ++ +G +IGVP L + D + + EL Sbjct: 108 KPVIAITGSNGKSTVTD-LTGVMAKAAGVKVAVGG---NIGVP-ALDLLEQDAELYVLEL 162 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227 L E L A ++ H+ + G+E+ AK IF+ E +N Sbjct: 163 SSFQL-ETTSSLKLK---AAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAE---LAVVNR 215 Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQL-----RKWKQCSEQSWM---EVQLQGK 279 DD K + +FG DF L R+W + Q + E++L G+ Sbjct: 216 DD------KQTYPDHAELQLVTFG-FDQQDFGLAQHQGREWLADNGQPVLASAELKLVGR 268 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC---ALNQ 336 H N+L+ L ++ D A+ AL K G +RC A N Sbjct: 269 -----------HNVANVLVVLALLDAAGVDYRKALDAL-----KSYTGLTHRCQVVADNH 312 Query: 337 GFFTLIDESYNANPASMKAAISVLS 361 G +++S N AS AA+S L Sbjct: 313 G-IKWVNDSKATNVASTLAALSGLE 336 |
Length = 438 |
>gnl|CDD|179651 PRK03806, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
Score = 42.6 bits (101), Expect = 2e-04 Identities = 64/261 (24%), Positives = 114/261 (43%), Gaps = 37/261 (14%) Query: 107 KATIIAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164 +A I+AITGS GK+T ++ +A K +G N IG+P L+L ++ + Sbjct: 104 QAPIVAITGSNGKSTVTTLVGEMA----KAAGWKVGVGGN-IGLPALSLLDQECEL--YV 156 Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTI 223 EL L T ++ A I + H+ + G+++ +AK I+E + Sbjct: 157 LELSSFQLET----TSSLKAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAK---VC 209 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGK 279 +N DD+ L + + SFG + D+ L + + ++W+ V+ L K Sbjct: 210 VVNADDA----LTMPIRGADKRCV-SFGVN-MGDYHLNRQQ---GETWLRVKGEKVLNTK 260 Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 M++ G H N L L + + +++KAL+ F G R++ L Sbjct: 261 EMKLS----GQHNYTNALAALALADAVGIPRASSLKALTTFT---GLPHRFQLVLEHNGV 313 Query: 340 TLIDESYNANPASMKAAISVL 360 I++S N S +AA++ L Sbjct: 314 RWINDSKATNVGSTEAALNGL 334 |
Length = 438 |
>gnl|CDD|145824 pfam02875, Mur_ligase_C, Mur ligase family, glutamate ligase domain | Back alignment and domain information |
---|
Score = 47.3 bits (113), Expect = 1e-05 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 8/71 (11%) Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393 N G + D Y NP +++AA+ L ++ +GR I V G G+ FH L Sbjct: 10 ENNGVLVIDD--YAHNPDALEAALQALKEL---FDGRLILVFGA---GGDRDAEFHALLG 61 Query: 394 EVLSLYNISHV 404 + + + Sbjct: 62 ALAAALADVVI 72 |
This family contains a number of related ligase enzymes which have EC numbers 6.3.2.*. This family includes: MurC, MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure and MurF catalyse consecutive steps in the synthesis of peptidoglycan. Peptidoglycan consists of a sheet of two sugar derivatives, with one of these N-acetylmuramic acid attaching to a small pentapeptide. The pentapeptide is is made of L-alanine, D-glutamic acid, Meso-diaminopimelic acid and D-alanyl alanine. The peptide moiety is synthesized by successively adding these amino acids to UDP-N-acetylmuramic acid. MurC transfers the L-alanine, MurD transfers the D-glutamate, MurE transfers the diaminopimelic acid, and MurF transfers the D-alanyl alanine. This family also includes Folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate. Length = 87 |
>gnl|CDD|30633 COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism] | Back alignment and domain information |
---|
Score = 40.3 bits (94), Expect = 0.001 Identities = 49/226 (21%), Positives = 90/226 (39%), Gaps = 32/226 (14%) Query: 158 VDVDFGIFELGMSHLGEIRF-LTHLVRPHIAVITTIAPAHLSNFSG--IEEIASAKAEIF 214 VD I E+G+ R T+++ P ++VIT+I H + F G +E IA KA I Sbjct: 136 AKVDVAILEVGLG----GRLDATNVIEPDVSVITSIGLDH-TAFLGDTLESIAREKAGII 190 Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 + + ++ ++ ++ LG DFQ+ + Sbjct: 191 KAGKPAVIGEQQPPEA-LNVIAERAEELGAPLFVL-----GPDFQVLEEGN-----GFSF 239 Query: 275 QLQGKSMEVVHHGIGYHM-AQNMLMTLGIVSILTADV--DTAIKAL-SVFHPKEGRGKRY 330 Q G +++ +G H +N + + + L ++ + K L +V P GR +R Sbjct: 240 QGGGGLLDLPLPLLGGHHQIENAALAIAALEALGKEISEEAIRKGLANVDWP--GRLER- 296 Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376 L++ L+D ++ NP + +A L + R V G Sbjct: 297 ---LSENPLILLDGAH--NPHAARALAETLKTLFND-RPRLTLVFG 336 |
Length = 427 |
>gnl|CDD|179872 PRK04690, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
Score = 39.0 bits (91), Expect = 0.003 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 9/99 (9%) Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL--TLARMPV 158 AAR + +TG+ GK+TT +L L + A +G+ IGVPL LA P Sbjct: 108 AARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAGHRTALVGN----IGVPLLEVLAPQPA 163 Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197 ++ EL G++ RP +AV+ + P HL Sbjct: 164 -PEYWAIELSSYQTGDVA--RSGARPELAVVLNLFPEHL 199 |
Length = 468 |
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 472 | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimel | ||
TIGR01143 | 462 | murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanin | 100.0 | |
PRK11929 | 953 | putative bifunctional UDP-N-acetylmuramoylalanyl-D-glut | 100.0 | |
PRK11929 | 953 | putative bifunctional UDP-N-acetylmuramoylalanyl-D-glut | 100.0 | |
TIGR01085 | 494 | murE UDP-N-acetylmuramyl-tripeptide synthetases; InterP | 100.0 | |
COG0769 | 475 | MurE UDP-N-acetylmuramyl tripeptide synthase [Cell enve | 100.0 | |
TIGR01082 | 491 | murC UDP-N-acetylmuramate--alanine ligase; InterPro: IP | 100.0 | |
TIGR01081 | 459 | mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso | 100.0 | |
PRK10773 | 452 | murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanin | 100.0 | |
PRK11930 | 824 | putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D | 100.0 | |
COG0770 | 451 | MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell en | 100.0 | |
PRK00139 | 481 | murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin | 100.0 | |
TIGR02068 | 876 | cya_phycin_syn cyanophycin synthetase; InterPro: IPR011 | 100.0 | |
PRK00421 | 459 | murC UDP-N-acetylmuramate--L-alanine ligase; Provisiona | 100.0 | |
PRK02006 | 501 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
COG0773 | 459 | MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope | 100.0 | |
PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK02472 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK01368 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK01390 | 457 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK01438 | 481 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Ce | 100.0 | |
PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK03369 | 487 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK00141 | 476 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
TIGR01087 | 476 | murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; I | 100.0 | |
PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK03815 | 401 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
COG0285 | 427 | FolC Folylpolyglutamate synthase [Coenzyme metabolism] | 100.0 | |
PRK10846 | 416 | bifunctional folylpolyglutamate synthase/ dihydrofolate | 100.0 | |
). A crystal structure of the MgATP complex of the enzyme from Lactobacillus casei reveals that folylpolyglutamate synthetase is a modular protein consisting of two domains, one with a typical mononucleotide-binding fold and the other strikingly similar to the folate-binding enzyme dihydrofolate reductase. The active site of the enzyme is located in a large interdomain cleft adjacent to an ATP-binding P-loop motif. Opposite this site, in the C domain, a cavity likely to be the folate binding site has been identified, and inspection of this cavity and the surrounding protein structure suggests that the glutamate tail of the substrate may project into the active site. A further feature of the structure is a well defined Omega loop, which contributes both to the active site and to interdomain interactions .; GO: 0004326 tetrahydrofolylpolyglutamate synthase activity, 0005524 ATP binding, 0009396 folic acid and derivative biosynthetic process." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=TIGR01499">TIGR01499 | 460 | folC FolC bifunctional protein; InterPro: IPR001645 Fol | 100.0 | |
KOG2525 | 496 | consensus | 99.89 | |
pfam08245 | 188 | Mur_ligase_M Mur ligase middle domain. | 100.0 | |
pfam01225 | 76 | Mur_ligase Mur ligase family, catalytic domain. This fa | 99.71 | |
PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltra | 98.15 | |
COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 96.96 | |
TIGR01853 | 336 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N | 96.04 | |
pfam04613 | 72 | LpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltra | 95.06 | |
pfam07085 | 105 | DRTGG DRTGG domain. This presumed domain is about 120 a | 94.34 | |
COG4109 | 432 | Predicted transcriptional regulator containing CBS doma | 90.97 | |
TIGR02782 | 315 | TrbB_P P-type conjugative transfer ATPase TrbB; InterPr | 90.96 | |
pfam02875 | 87 | Mur_ligase_C Mur ligase family, glutamate ligase domain | 99.0 | |
PRK05439 | 312 | pantothenate kinase; Provisional | 95.26 | |
TIGR03453 | 387 | partition_RepA plasmid partitioning protein RepA. Membe | 91.6 | |
PRK13869 | 405 | plasmid-partitioning protein RepA; Provisional | 91.09 | |
TIGR01968 | 272 | minD_bact septum site-determining protein MinD; InterPr | 90.42 | |
PRK00409 | 780 | recombination and DNA strand exchange inhibitor protein | 93.14 | |
TIGR00313 | 502 | cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Co | 92.83 | |
TIGR01069 | 834 | mutS2 MutS2 family protein; InterPro: IPR005747 Mismatc | 92.27 | |
TIGR00670 | 336 | asp_carb_tr aspartate carbamoyltransferase; InterPro: I | 92.04 | |
PRK09841 | 726 | cryptic autophosphorylating protein tyrosine kinase Etk | 90.04 | |
TIGR02764 | 198 | spore_ybaN_pdaB polysaccharide deacetylase family sporu | 91.38 | |
TIGR01278 | 562 | DPOR_BchB light-independent protochlorophyllide reducta | 91.32 | |
TIGR00631 | 667 | uvrb excinuclease ABC, B subunit; InterPro: IPR004807 A | 91.22 | |
COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility and s | 90.28 | |
COG1072 | 283 | CoaA Panthothenate kinase [Coenzyme metabolism] | 90.16 |
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; InterPro: IPR005863 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=858.81 Aligned_cols=430 Identities=37% Similarity=0.550 Sum_probs=402.5 Q ss_pred EECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCC----CCCCCCCCCEEEECCH-HHHHHHHHHHHHHCC Q ss_conf 40222378988897168874768889999986988999855212----4554469728995998-999999999998306 Q gi|254781101|r 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV----ASIGSLSIPVFGVDDV-LGALNKLAVAARLRS 106 (472) Q Consensus 32 ~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~----~~~~~~~~~~i~v~d~-~~al~~la~~~~~~~ 106 (472) T Consensus 1 ~DSR~~~~g~LF~AL~G~~fDGH~F~~~A~~~GA~Avl~~r~v~~e~~~~~~~~~~~~~~V~DtV~~AL~~lA~~~~~~~ 80 (462) T TIGR01143 1 TDSRAIKPGDLFIALKGERFDGHDFVEQALAAGAVAVLVDREVESEVVKYNPDNGLPQILVDDTVLAALQALASAKREKF 80 (462) T ss_pred CCCCEECCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCCEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHC T ss_conf 98643158704750688998634679999857966999970777057510379985289980658999999999999743 Q ss_pred CCC--EEEEECCCCCCHHHHHHHHHHHHHHC----CCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCC Q ss_conf 993--99983036542012334677775201----122212211014574100012322144430156644332112122 Q gi|254781101|r 107 KAT--IIAITGSVGKTTTKEMLTIALSSIKK----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 (472) Q Consensus 107 ~~~--vI~ITGTnGKTTt~~~l~~iL~~~~~----~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~ 180 (472) T Consensus 81 ~~~~~~igiTGS~GKTTtKEm~~~iL~~~~~~~~aV~~t~GN~Nn~iGlPltlL~~~~~~~~aV~EmG~s~~GEI~~L~~ 160 (462) T TIGR01143 81 SAKRRVIGITGSSGKTTTKEMLAAILSHKYKDSEAVLATPGNFNNEIGLPLTLLRATEDHDYAVLEMGASHPGEIAYLAE 160 (462) T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHH T ss_conf 99758999856896067999999999853597532362488767613567887507888805999843898873789998 Q ss_pred CCCCCEEEEEEECCCHHHH---HHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCC-CC Q ss_conf 3232202555312101234---4457888865433103762210121013424689987520123333322222222-22 Q gi|254781101|r 181 LVRPHIAVITTIAPAHLSN---FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NA 256 (472) Q Consensus 181 i~~P~iaiiTNI~~dHld~---~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~-~a 256 (472) T Consensus 161 i~~P~ia~itNi~~AHl~~F~~Fgs~~~Ia~aK~EI~~~~~~~~~a~~n~d~~~~~~~~~~~~~~~~~~~~~Fg~~~~~~ 240 (462) T TIGR01143 161 IAKPDIALITNIGEAHLEGFGDFGSLEGIAEAKGEILQGLKENGIAVINADDPALAKFKKRLKILNKAKVLSFGLEGKYA 240 (462) T ss_pred HHCCCEEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHCCCCCCCCEEEECCCCCCC T ss_conf 61998699917047876115787538999999999970789775898535256889999841115786478814777634 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCC-CCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECC Q ss_conf 222344211346510012456543221222-22222-3333221035676510121034554311476644331010003 Q gi|254781101|r 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHH-GIGYH-MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 (472) Q Consensus 257 d~~~~~i~~~~~~~~~~~~~~~~~~~~~l~-~~G~h-nv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~ 334 (472) T Consensus 241 d~~~~~~~~~~~g~~f~~~~~~~~~~v~LP~~~G~h~n~~NalaA~Ala~~lG~~~~~~~~gL~~~~~~~gR~~~~~--- 317 (462) T TIGR01143 241 DVSAEDVSLSELGTGFTLVTPGGEIEVELPILLGRHPNVENALAAAALALALGLPLEEIAEGLSELKPVKGRLEVIQ--- 317 (462) T ss_pred CEEEECCEECCCCCEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEE--- T ss_conf 36884321215333589986370899983112088188999999999999809888899989764278876507898--- Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCC-CCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCH-- Q ss_conf 653113310002565321012577787411102-68713885123541710589999999999864998999988038-- Q gi|254781101|r 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-- 411 (472) Q Consensus 335 ~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~-~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~-- 411 (472) T Consensus 318 ~~~g~~~IdD~YNAnp~Sm~AAl~~L~~~~~~~E~g~~~~VLG~M~ELG~~s~~~H~~vg~~a~~~~~~~~~~~G~~~~~ 397 (462) T TIGR01143 318 TKKGLTLIDDTYNANPDSMRAALDALARFPGKGEVGKKILVLGDMLELGELSEELHAEVGRYAAALGIDLVFLVGEEASP 397 (462) T ss_pred ECCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC T ss_conf 64874898441359889999999996138888863546899838453117999999999999986287389984773350 Q ss_pred ---HHHHHHCCCC-----CCEEEECCHHHHHHHHH----HHCCCCCEEEEECCCHHHHHHHHHHH Q ss_conf ---9899851137-----97999789899999999----84478989999771325489999999 Q gi|254781101|r 412 ---LALKDALPRS-----IHVHYSETMDGLFLFIQ----SSLVDGDVVVVKSSNSCGFYRLINLL 464 (472) Q Consensus 412 ---~~~~~~~~~~-----~~~~~~~~~e~a~~~l~----~~~~~gdiVLiKGSr~~~le~iv~~L 464 (472) T Consensus 398 ~~~~~~~~~~~~~e~~~~~~~~~f~~~~~l~~~L~~~~~~~~~~~~~vLvKGSR~~~le~vv~~L 462 (462) T TIGR01143 398 NTVAVIADSLGSGEKLVKKQGKHFADKDELLAFLKDLNELQVGEGDVVLVKGSRSVKLEKVVEAL 462 (462) T ss_pred HHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCC T ss_conf 26999999855896504688875179889999987533112578608999536423678998409 |
The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF, 6.3.2.15 from EC), which is required to catalyze the final step in the synthesis of the cytoplasmic precursor of the bacterial cell wall peptidoglycan. |
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=839.08 Aligned_cols=431 Identities=29% Similarity=0.410 Sum_probs=397.3 Q ss_pred CCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHH Q ss_conf 71474677402223789888971688747688899999869889998552124554469728995998999999999998 Q gi|254781101|r 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103 (472) Q Consensus 24 ~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~~~i~v~d~~~al~~la~~~~ 103 (472) T Consensus 511 ~~~~~~isiDSR~v~~GdlFvAlkG~~~DGH~Fi~~Ai~~GA~~~vv~~~~----~~~~~p~I~V~Dt~~AL~~lA~~~r 586 (953) T PRK11929 511 KEISGAVSTDSRSIGRGEIFVALKGENFDGHAYLPQAFSAGACAAVVAHQV----ADVALPQLVLGDTLAALGRMATAWR 586 (953) T ss_pred HHHCCCEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCC----CCCCCCEEEECCHHHHHHHHHHHHH T ss_conf 876185674377368898899971487777999999998699799992566----6678897996898999999999999 Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHH----HHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCC Q ss_conf 30699399983036542012334677775----20112221221101457410001232214443015664433211212 Q gi|254781101|r 104 LRSKATIIAITGSVGKTTTKEMLTIALSS----IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179 (472) Q Consensus 104 ~~~~~~vI~ITGTnGKTTt~~~l~~iL~~----~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~ 179 (472) T Consensus 587 ~~~~~~vIgITGSnGKTTTKeml~~iLs~~~~~~~~v~~t~gN~NN~iGvPltll~l~~~~~~aVlEmGms~~GEI~~L~ 666 (953) T PRK11929 587 SSFSLPVIAITGSNGKTTTKEMIAAILAQWQGDDGRVTATEGNFNNEIGVPLTLLRLRARHRAAVFELGMNHPGEIARLA 666 (953) T ss_pred HHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCHHHHHHHCCCCCCHHHHHH T ss_conf 75799789996788507899999999985177784388556743786667178757996346578765289622699860 Q ss_pred CCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC Q ss_conf 23232202555312101234445788886543310376221012101342468998752012333332222222222222 Q gi|254781101|r 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259 (472) Q Consensus 180 ~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~ 259 (472) T Consensus 667 ~i~~PdiaVITNIg~aHLe~fgs~e~Ia~aK~eIf~~l~~~g~aIlN~DD~~~~~~~~~~~~~~i-~~fg~~~~~~adi~ 745 (953) T PRK11929 667 AIAAPTVALVTNAQREHQEFLHSVEAVARANGALINALPEDGIAVVNGDDPYAAIWAKLAGARRV-LRFGLSLQPGLDVY 745 (953) T ss_pred CCCCCCEEEEECCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCE-EEEEECCCCCCCEE T ss_conf 62589778874456998766189999999999998315879799993886889999998457875-99985258987689 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCE Q ss_conf 34421134651001245654322122222222333322103567651012103455431147664433101000365311 Q gi|254781101|r 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 (472) Q Consensus 260 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~ 339 (472) T Consensus 746 ~~~i~~~~~g~~~~~~~~~~~~~v~l~l~G~hnv~NaLaAiAva~~lGi~~~~i~~~L~~~~~~~gR~e~~~~---~~g~ 822 (953) T PRK11929 746 AEDIVTQAAGTLCFVVTPAGSAYVDLPVPGEHNLRNALAAIAIGLAAGAPLHQIIAALEGFQAVKGRMQRRQL---SDGT 822 (953) T ss_pred EEEEEECCCCEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEE---CCCE T ss_conf 9998986896499999789569999568979999999999999999399999999998669999998789995---7997 Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCC Q ss_conf 33100025653210125777874111026871388512354171058999999999986499899998803898998511 Q gi|254781101|r 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 (472) Q Consensus 340 ~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~ 419 (472) T Consensus 823 ~iIDDsYNANP~Sm~aAl~~L~~~~---~~~kiaVLGdM~ELG~~s~~~H~~ig~~~~~~~id~v~~vG~~~~~~~~~~~ 899 (953) T PRK11929 823 VIIDDTYNANPDSMRAAIDVLARLP---GPKRALVLGDMLELGDNGPAMHREVGDYAREHSIDALITLGEASRDAAHAFG 899 (953) T ss_pred EEEEECCCCCHHHHHHHHHHHHCCC---CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCC T ss_conf 9999784888999999999985287---9986999848500245789999999999997599999998657999986568 Q ss_pred CCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHH Q ss_conf 37979997898999999998447898999977132548999999998 Q gi|254781101|r 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 (472) Q Consensus 420 ~~~~~~~~~~~e~a~~~l~~~~~~gdiVLiKGSr~~~le~iv~~L~~ 466 (472) T Consensus 900 ~~-~~~~~~~~~~l~~~L~~~l~~~d~VLVKGSR~m~lE~iV~~l~~ 945 (953) T PRK11929 900 KA-ARACFASVDEIIAALRGLLPSSDIVLIKGSRFMRLERVVTAFST 945 (953) T ss_pred CC-CEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHC T ss_conf 46-57883999999999985589999999971560469999999972 |
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>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=592.53 Aligned_cols=416 Identities=24% Similarity=0.312 Sum_probs=348.1 Q ss_pred CCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHH Q ss_conf 71474677402223789888971688747688899999869889998552124554469728995998999999999998 Q gi|254781101|r 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103 (472) Q Consensus 24 ~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~~~i~v~d~~~al~~la~~~~ 103 (472) T Consensus 26 ~~~~~~it~DSR~V~~G~lFvAl~G~~~DGh~fi~~Ai~~GA~aiv~e~~~~~~-~~~~~~~i~V~d~r~al~~la~~fy 104 (953) T PRK11929 26 VAATADLRLDSREVAPGDVFVACRGGASDGRAFIDQALARGAAVVIYEAEGAPV-APAGCLALPVADLRKALGELADEWY 104 (953) T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCC-CCCCCCEEEECCHHHHHHHHHHHHH T ss_conf 776455656654179999899945287788999999998699799991664444-6789719997989999999999986 Q ss_pred HCC--CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCC------CCCH------H----CCC-CCCCHHHH Q ss_conf 306--993999830365420123346777752011222122110145------7410------0----012-32214443 Q gi|254781101|r 104 LRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG------VPLT------L----ARM-PVDVDFGI 164 (472) Q Consensus 104 ~~~--~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iG------vplt------l----l~~-~~~~~~~V 164 (472) T Consensus 105 ~~ps~~l~vigVTGTNGKTTt~~~i~~il~~~g~~~~~iGTlg~~~~~~~~~~~~~TTP~~~~l~~~l~~~~~~g~~~~v 184 (953) T PRK11929 105 GKPSQDLSVVAVTGTNGKTSCAQWLAQMLTRLGKPCGSIGTLGARLPDGQSLGGSLTTPDVITLHRLLARMRAAGADAVA 184 (953) T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE T ss_conf 49675887899979997999999999999867998899832454058764467899994899999999999976997999 Q ss_pred HCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCC Q ss_conf 01566443321121223232202555312101234445788886543310376221012101342468998752012333 Q gi|254781101|r 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 (472) Q Consensus 165 ~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~ 244 (472) T Consensus 185 mEvS-SHgL~q~Rv~g-i~fdvaifTNls~DHLDyH~tme~Y~~aK~~LF~~l~~~~~aViN~Dd~~~~~l~~~~~~~-- 260 (953) T PRK11929 185 MEAS-SHGLEQGRLDG-IRFAVAGFTNLTRDHLDYHGTMEDYEQAKAALFEQWPPLGAAVINADDPAGERLLASLPAA-- 260 (953) T ss_pred EEEC-HHHHHHHHHCC-CCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCC-- T ss_conf 9833-06776434208-7878899947976786654899999999999998741086699979888899999871278-- Q ss_pred CCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCC Q ss_conf 3322222-222222223442113465100124565432212222222233332210356765101210345543114766 Q gi|254781101|r 245 KTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 (472) Q Consensus 245 ~~i~~~g-~~~~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~ 323 (472) T Consensus 261 -~~~~~~~~~~~ad~~~~~i~~~~~g~~f~l~~~~~~~~~~~~L~G~fNv~N~laA~a~~~~~g~~~~~i~~~l~~~~~v 339 (953) T PRK11929 261 -LLTGYALQGSPADVHAYDLQATAHGQVFTLALPDGEAQIVTGLLGRHNISNLLLVAGALSKLGWPLPQIARELAAVSPV 339 (953) T ss_pred -CEEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC T ss_conf -5899933678774899999982898689999789279998068631249999999999998399999999988617998 Q ss_pred CCCCCCCEECCC-CCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCC Q ss_conf 443310100036-5311331000256532101257778741110268713885123541710589999999999864998 Q gi|254781101|r 324 EGRGKRYRCALN-QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 (472) Q Consensus 324 ~GR~~~~~~~~~-~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d 402 (472) T Consensus 340 pGRmE~v~~~~~~~~~~viVD--YAHTpdAl~~~L~~lr~~~-~~~~rli~VfG----cgGdRD~~KRp~Mg~iA~~~aD 412 (953) T PRK11929 340 DGRLERVGPTASAQGPLVVVD--YAHTPDALARALTALRPVA-EANGRLVCVFG----CGGNRDKGKRPEMGRIAAELAD 412 (953) T ss_pred CCCEEEEECCCCCCCCEEEEE--CCCCHHHHHHHHHHHHHHH-CCCCCEEEEEC----CCCCCCCCHHHHHHHHHHHHCC T ss_conf 887599615666789669998--6789899999999999761-46980999989----8787761034899999998499 Q ss_pred EEEEECC-----CHHHHHH----HCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEE--ECC Q ss_conf 9999880-----3898998----511379799978989999999984478989999--771 Q gi|254781101|r 403 HVWLSGF-----HVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KSS 452 (472) Q Consensus 403 ~v~~~G~-----~~~~~~~----~~~~~~~~~~~~~~e~a~~~l~~~~~~gdiVLi--KGS 452 (472) T Consensus 413 ~viiT~DNPR~Edp~~I~~dI~~g~~~~~~~~~i~dR~~AI~~ai~~a~~~D~vliaGKGh 473 (953) T PRK11929 413 RVIVTSDNPRDEAPEDIIDQILAGIPAGARALRQSDRALAIMQAIWMAKPGDVILLAGKGH 473 (953) T ss_pred EEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 8998689989999999999998565668866997799999999998479999899987686 |
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>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetases; InterPro: IPR005761 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=568.76 Aligned_cols=419 Identities=26% Similarity=0.314 Sum_probs=337.4 Q ss_pred CCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCC-CCCCCEEEECCH-HHHHHHHHHH Q ss_conf 71474677402223789888971688747688899999869889998552124554-469728995998-9999999999 Q gi|254781101|r 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGVDDV-LGALNKLAVA 101 (472) Q Consensus 24 ~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~-~~~~~~i~v~d~-~~al~~la~~ 101 (472) T Consensus 1 ~~~~~~l~~~S~~V~~G~~F~A~~G~~~DG~~fi~~A~~~GA~aVv~e~~~~-~~~~~~~V~~i~~~d~~r~~~~~~A~~ 79 (494) T TIGR01085 1 DLEVTGLTLDSREVKPGDLFVAIKGTKVDGHDFIEEAIENGAVAVVVEREVD-YVAGRAGVPVIIVPDLKRHALSSLAAA 79 (494) T ss_pred CCEEECCCCCHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCC-CCCCCCCCEEEEECCHHHHHHHHHHHH T ss_conf 9603110013001279967897125655848889999872988999806011-276434610799623135888999999 Q ss_pred HHHCC--CCCEEEEECCCCCCHHHHHHHHHHHHHHCCC---CCHHH--H-HCCCC------CCC--H----HCCC-CCCC Q ss_conf 98306--9939998303654201233467777520112---22122--1-10145------741--0----0012-3221 Q gi|254781101|r 102 ARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTY---ACIGS--Y-NNHIG------VPL--T----LARM-PVDV 160 (472) Q Consensus 102 ~~~~~--~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~---~t~gn--~-Nn~iG------vpl--t----ll~~-~~~~ 160 (472) T Consensus 80 fY~~Ps~~l~viGvTGTNGKTtt~~li~~~l~~~G~~tgliGT~g~~~~g~~~~~~~~~~TTP~~~~~q~~L~~~~~~g~ 159 (494) T TIGR01085 80 FYGHPSKKLKVIGVTGTNGKTTTTSLIAQLLELLGKKTGLIGTIGYRLGGNELIKDPASLTTPEALTLQKTLAEMVEAGA 159 (494) T ss_pred HHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC T ss_conf 73485525168999712874489999999998679708998654530477631266555679971899999999996599 Q ss_pred HHHHHCCCCCCCCCCC--CCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCC------CCHHHHCCCCHHH Q ss_conf 4443015664433211--2122323220255531210123444578888654331037622------1012101342468 Q gi|254781101|r 161 DFGIFELGMSHLGEIR--FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK------TGTIFLNYDDSFF 232 (472) Q Consensus 161 ~~~V~E~g~~~~gei~--~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~------~g~~ViN~Dd~~~ 232 (472) T Consensus 160 ~~~v~EvS-SHaL~q~TARV~~-~~F~~~vFTNl~~DHLDfHgtmEnY~~aK~~LF~~~~~~~~~~~~~~aV~n~dD~~~ 237 (494) T TIGR01085 160 QYAVMEVS-SHALAQGTARVEG-VDFDAAVFTNLTRDHLDFHGTMENYFAAKAKLFTELGLKSDRRRARFAVINLDDEYG 237 (494) T ss_pred CEEEEEEE-HHHHHCCCCEEEC-CEEEEEEEECCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCHHH T ss_conf 79999863-0124214211102-115799960788302340334899999998524400136775356611588645446 Q ss_pred HHHHHHCCCCCCCCCCC-CCC--CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHC- Q ss_conf 99875201233333222-222--222222234421134651001245654-3221222222223333221035676510- Q gi|254781101|r 233 ELLKAKSHALGIKTIYS-FGK--SKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILT- 307 (472) Q Consensus 233 ~~l~~~~~~~~~~~i~~-~g~--~~~ad~~~~~i~~~~~~~~~~~~~~~~-~~~~~l~~~G~hnv~NalaAia~~~~lG- 307 (472) T Consensus 238 ~~f~~~~~~~~~~~~~~~~A~~R~~~~~~~~~~~~~~~~G~~~~~~~~~g~~~~~~~~LiG~FNv~N~lAa~a~~~~~gg 317 (494) T TIGR01085 238 AQFVKRLPKDITVSAITQKADWRGKAQDIKITDSGYSFEGQSFTFETPAGVEFKLHTPLIGRFNVYNLLAALATLLHLGG 317 (494) T ss_pred HHHHHHHHHHCEEEEEEECCCCCCCCCCCHHHCCCCEEEEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCC T ss_conf 99986102522577885042126311240110000103456667524675206887536136889999999999997338 Q ss_pred CCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHH-HCCCCCCEEEECCHHHCCCCHH Q ss_conf 121034554311476644331010003653113310002565321012577787411-1026871388512354171058 Q gi|254781101|r 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGELSQ 386 (472) Q Consensus 308 i~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~-~~~~~r~i~VlG~m~ELG~~~~ 386 (472) T Consensus 318 ~~~~~~~~~l~~~~gv~GRmE~v~~~~-~~f~V~VD--YAHTPDaLek~L~~lr~~~~~~~~g~L~~vFG----cGGdRD 390 (494) T TIGR01085 318 IDLEDIVAALEKLRGVPGRMELVDGGQ-QKFLVIVD--YAHTPDALEKVLRTLRAIKLKHKKGRLIVVFG----CGGDRD 390 (494) T ss_pred CCHHHHHHHHHHCCCCCCCCEEECCCC-CCCEEEEE--ECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEE----CCCCCC T ss_conf 889999989873489987312302789-99607997--14880589999999999984258982799981----578998 Q ss_pred HHHHHHHHHHHHCCCCEEEEECCC-----HH----HHHHHCCCCCC---EEEECCHHHHHHHHHHHCCCCCEEEE--ECC Q ss_conf 999999999986499899998803-----89----89985113797---99978989999999984478989999--771 Q gi|254781101|r 387 SFHIDLAEVLSLYNISHVWLSGFH-----VL----ALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVV--KSS 452 (472) Q Consensus 387 ~~h~~i~~~~~~~~~d~v~~~G~~-----~~----~~~~~~~~~~~---~~~~~~~e~a~~~l~~~~~~gdiVLi--KGS 452 (472) T Consensus 391 r~KRplMG~iA~~~AD~~ilT~DNPR~Edp~~I~~Di~~G~~~~~~~~~~~~i~DR~~AI~~Ai~~A~~gD~VLiAGKGH 470 (494) T TIGR01085 391 RGKRPLMGAIAEQLADLIILTSDNPRSEDPEQIIADILAGISEKEKDKDVVIIADRRQAIRKAISNAKAGDVVLIAGKGH 470 (494) T ss_pred CCCCHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 44575899999982986898368854579799999999714776667515896017899999998404798899961577 |
The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents DP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligases (MurE; 6.3.2.13 from EC). An exception is found with Staphylococcus aureus, in which diaminopimelate is replaced by lysine in the peptidoglycan and MurE is (6.3.2.7 from EC). The Mycobacteria, part of the closest neighbouring branch outside of the low-GC Gram-positive bacteria, use diaminopimelate.; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm. |
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=424.84 Aligned_cols=408 Identities=24% Similarity=0.292 Sum_probs=316.7 Q ss_pred EEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCC- Q ss_conf 4677402223789888971688747688899999869889998552124554469728995998999999999998306- Q gi|254781101|r 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS- 106 (472) Q Consensus 28 ~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~~~i~v~d~~~al~~la~~~~~~~- 106 (472) T Consensus 11 ~~l~~dsr~v~~g~lf~a~~g~~~~g~~~~~~a~~~Gavav~~~~~~--~~~~~~~~vi~V~~~~~~~~~~a~~~y~~ps 88 (475) T COG0769 11 TGLTLDSRKVKEGDLFVAKPGTKVDGHDFIAGAIAPGAVAVVVEKDI--KLAEAGVPVIVVTGTNGKLTTLALAFYGLPS 88 (475) T ss_pred CCCCCCHHHCCCCCEEEEEECCCCCCCCCCHHHHHCCCEEEEECCCC--CCCCCCCCEEEECCCHHHHHHHHHHHCCCCC T ss_conf 57622365637684799973235245344065762897799970555--5545678779986853777888998523865 Q ss_pred -CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCC--CC--------CC--H---HCC--CCCCCHHHHHCCC Q ss_conf -99399983036542012334677775201122212211014--57--------41--0---001--2322144430156 Q gi|254781101|r 107 -KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI--GV--------PL--T---LAR--MPVDVDFGIFELG 168 (472) Q Consensus 107 -~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~i--Gv--------pl--t---ll~--~~~~~~~~V~E~g 168 (472) T Consensus 89 ~~l~vigvTGTNgKTt~t~~~~~~~~~~g~~~~~~gT~g~~~~~~~~~~~~~tTP~~~~l~~~~~~~~d~~~e~~vmEvs 168 (475) T COG0769 89 GKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEGDELSPGILEPTGLTTPEALDLQNLLRDLLDRGAEIAVMEVS 168 (475) T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEC T ss_conf 78518986387857999999999988629825899977663268863456678921789999999999738809998850 Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCC Q ss_conf 64433211212232322025553121012344457888865433103762210121013424689987520123333322 Q gi|254781101|r 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248 (472) Q Consensus 169 ~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~ 248 (472) T Consensus 169 -sh~l~~~Rv~-~~~f~v~~ftnls~DHlD~h~t~e~Y~~aK~~lf~~~~~~~~~Vin~dd~~~~~~~~~~~~~~~-~~~ 245 (475) T COG0769 169 -SHGLVQGRVE-GVTFDVGVFTNLSRDHLDYHGTMEYYGAAKAVLFESLPHSGEAVINPDDGHGLDYKERLKNALG-DYI 245 (475) T ss_pred -HHHHHHCCCC-CCEEEEECCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHCCC-CEE T ss_conf -3479757865-6359886456656666523574999998898776405788747987788038889999985688-789 Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCC Q ss_conf 2222222222234-421134651001245654322122222222333322103567651012103455431147664433 Q gi|254781101|r 249 SFGKSKNADFQLR-KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327 (472) Q Consensus 249 ~~g~~~~ad~~~~-~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~ 327 (472) T Consensus 246 ~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~L~G~fNv~NaLaA~a~~~~lG~~~e~i~~~l~~~~~v~GRm 325 (475) T COG0769 246 TYGCDFKRPDLDYRGIEESSSGSDFVFEPSGGIGEYELPLPGLFNVYNALAAVAAALALGVDLEDILAGLETLKPVPGRM 325 (475) T ss_pred EECCCCCCCCHHHCCCEEEECCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCE T ss_conf 96889963121222611421354058863787326860412277899999999999874999999999997468999860 Q ss_pred CCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 10100036531133100025653210125777874111026871388512354171058999999999986499899998 Q gi|254781101|r 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407 (472) Q Consensus 328 ~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~ 407 (472) T Consensus 326 E~v~~~---~~~v~VD--yAHnPd~le~~L~~~~~~---~~g~li~VfG~----gGDrD~~kr~~mg~ia~~~ad~vivt 393 (475) T COG0769 326 ELVNIG---GKLVIVD--YAHNPDGLEKALRAVRLH---AAGRLIVVFGC----GGDRDKSKRPDMGAIAEQLADIVIVT 393 (475) T ss_pred EEECCC---CCEEEEE--ECCCHHHHHHHHHHHHHH---CCCCEEEEECC----CCCCCCCCCHHHHHHHHHCCCCEEEC T ss_conf 687389---9769999--534869999999998753---49848999776----68875343031599998559936991 Q ss_pred C-----CCHHHHHHHC----CCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECC Q ss_conf 8-----0389899851----1379799978989999999984478989999771 Q gi|254781101|r 408 G-----FHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 (472) Q Consensus 408 G-----~~~~~~~~~~----~~~~~~~~~~~~e~a~~~l~~~~~~gdiVLiKGS 452 (472) T Consensus 394 ~dnpR~edp~~i~~~i~~g~~~~~~~~~~~dr~~AI~~ai~~a~~~D~vliagk 447 (475) T COG0769 394 SDNPRSEDPAVILADILAGIEAPEKYEIIEDREEAIRKALDLAKEGDVVLIAGK 447 (475) T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHCCCCEEEEEEE T ss_conf 899887688999999983647664143011099999999986324887899642 |
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>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase; InterPro: IPR005758 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=347.19 Aligned_cols=412 Identities=23% Similarity=0.301 Sum_probs=290.2 Q ss_pred HHHHHHHHCCEEECCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHC----CCEEEEEC-CCCCCC---- Q ss_conf 788998727999526887147467740222378988897168874768889999986----98899985-521245---- Q gi|254781101|r 7 FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK----GAGLVVVN-TDMVAS---- 77 (472) Q Consensus 7 ~~~l~~~~~g~~~~~~~~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~----Ga~~~i~~-~~~~~~---- 77 (472) T Consensus 15 lA~~L~~~G~~VsG-S-D--~~~~~y~t~~L~~~Gi~I~~------g-~h~~~n~~~~p~g~~~vVv~S~~Ai~~~NpEi 83 (491) T TIGR01082 15 LAEILLNRGYKVSG-S-D--IAENAYTTKRLEALGIKIYI------G-EHSAENLDDLPTGAADVVVVSAAAIKEDNPEI 83 (491) T ss_pred HHHHHHHCCCCEEE-E-E--CCCCCCHHHHHHHCCCEECC------C-CCCHHHHCCCCCCCCCEEEEEEECCCCCCHHH T ss_conf 99999857890877-2-0--33563158999867876627------9-96779820367897437998640337888889 Q ss_pred --CCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC--CCCCHHHHHCCCCCCCHH Q ss_conf --5446972899599899999999999830699399983036542012334677775201--122212211014574100 Q gi|254781101|r 78 --IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK--TYACIGSYNNHIGVPLTL 153 (472) Q Consensus 78 --~~~~~~~~i~v~d~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~--~~~t~gn~Nn~iGvpltl 153 (472) T Consensus 84 ~~A~~~~IPv~~R---~~~Lael~---~~~-k-~~iaVaGtHGKTTTTamia~~~~~aGLdPt~~~GG~~~~-~~---~N 151 (491) T TIGR01082 84 VEAKERGIPVIRR---AEMLAELM---RKR-K-ESIAVAGTHGKTTTTAMIAVILKEAGLDPTVIVGGEVKE-AG---TN 151 (491) T ss_pred HHHHHCCCCEECH---HHHHHHHH---HHH-C-CEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCC-CC---CC T ss_conf 9999648881337---89999998---620-8-707998368725689999999984499976898664366-57---74 Q ss_pred CCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHH--HHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHH Q ss_conf 012322144430156644332112122323220255531210123--444578888654331037622101210134246 Q gi|254781101|r 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 (472) Q Consensus 154 l~~~~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld--~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~ 231 (472) T Consensus 152 a~~g~~~~~lvaEaDESd~~---~sFl~~~P~~ai~TNie~DH~D~tY~~~~E~~~~aF~~F~~~l~~~G~~v~c~DD~~ 228 (491) T TIGR01082 152 ARLGSSGEYLVAEADESDRS---ASFLHLQPEVAIVTNIEPDHLDNTYGSSLERLKAAFEKFIHNLPFYGLAVICADDPV 228 (491) T ss_pred EEECCCCCEEEEEEEECCCC---CCHHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHH T ss_conf 35714686799998723776---401206985799747774347766645789999999999982788879999838654 Q ss_pred HHHHHHHCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCHHHH Q ss_conf 8998752012333332222222-22222234421134651001245654--------32212222222233332210356 Q gi|254781101|r 232 FELLKAKSHALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGK--------SMEVVHHGIGYHMAQNMLMTLGI 302 (472) Q Consensus 232 ~~~l~~~~~~~~~~~i~~~g~~-~~ad~~~~~i~~~~~~~~~~~~~~~~--------~~~~~l~~~G~hnv~NalaAia~ 302 (472) T Consensus 229 ~~~l~~~~~~~r~d~~~~y~~~~~~~~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~G~~~~~~~~pG~HNvLNAlAA~av 308 (491) T TIGR01082 229 LRKLVPKATESRKDVVITYGGSGEDADIRAENIQQSGAEFEFSVRLKGKLGEATTEGPLEFKLNLPGRHNVLNALAAIAV 308 (491) T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEEECCCEEEEEEEECCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHH T ss_conf 78776355533870478668777641477887432264589999970452201110027999803872006789999988 Q ss_pred HHHHCCCC---------HHHHHHHHCCCCCCCCCCCCEECCCCCC------EEEEEECCCCCCCCHHHHHHHHHHHHHCC Q ss_conf 76510121---------0345543114766443310100036531------13310002565321012577787411102 Q gi|254781101|r 303 VSILTADV---------DTAIKALSVFHPKEGRGKRYRCALNQGF------FTLIDESYNANPASMKAAISVLSQISPHG 367 (472) Q Consensus 303 ~~~lGi~~---------~~i~~~L~~~~~~~GR~~~~~~~~~~~~------~~iIDDsYNAnP~S~~aal~~l~~~~~~~ 367 (472) T Consensus 309 a~~~g~~~~G~~~~~~~~~I~~~L~~F~G~~RRf~~~---g~~~~~~n~g~~~~~DD-YAHHPtEi~aTl~aAr~~~~~k 384 (491) T TIGR01082 309 ALELGLDFYGKVIVDFLEAIKRALANFQGVKRRFEIL---GECNGGNNNGTVLLIDD-YAHHPTEIKATLAAARQVYPDK 384 (491) T ss_pred HHHHCCCCCCCEEEEHHHHHHHHHHCCCCCCHHHHHH---HHCCCCCCCCEEEEEEC-CCCCHHHHHHHHHHHHHHHCCC T ss_conf 8872212368556415899999985068973101201---00278987527999965-8999789999999998752117 Q ss_pred CCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCC-CCEEEEE-----------CCCHHHHHHHCCC---CCCEEEECCHHH Q ss_conf 687138851235417105899999999998649-9899998-----------8038989985113---797999789899 Q gi|254781101|r 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHVWLS-----------GFHVLALKDALPR---SIHVHYSETMDG 432 (472) Q Consensus 368 ~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~-~d~v~~~-----------G~~~~~~~~~~~~---~~~~~~~~~~e~ 432 (472) T Consensus 385 ~~r~v~~FQPH--rYsRT~~~~~~F~~~L~--~haD~l~~~diY~A~E~~~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~ 460 (491) T TIGR01082 385 NRRIVVVFQPH--RYSRTKDLFDDFAKVLS--DHADELILLDIYAAGEEPIAGIDGKSLARKITQKKGKEEPYFVPDLAE 460 (491) T ss_pred CCEEEEEECCC--CHHHHHHHHHHHHHHHH--HCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHH T ss_conf 95799997498--56789988999999997--308999981532113677678778999999862578777610421778 Q ss_pred HHHHHHHHCCCCCEEEEECC Q ss_conf 99999984478989999771 Q gi|254781101|r 433 LFLFIQSSLVDGDVVVVKSS 452 (472) Q Consensus 433 a~~~l~~~~~~gdiVLiKGS 452 (472) T Consensus 461 ~~~~l~~~~~~GD~~~~~GA 480 (491) T TIGR01082 461 VVEFLAEVLQSGDLILTMGA 480 (491) T ss_pred HHHHHHHHCCCCCEEEEECC T ss_conf 99999997169989999605 |
The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramate-alanine ligase (MurC). MurC is an essential, cytoplasmic peptidoglycan biosynthetic enzyme, catalyzes the ATP-dependent ligation of L-alanine (Ala) and UDP-N-acetylmuramic acid (UNAM) to form UDP-N-acetylmuramyl-L-alanine (UNAM-Ala). The enzyme is a nonribosomal peptide ligase which utilises ATP to form an amide bond between L-alanine and UNAM.1 Mechanistic studies on the Escherichia coli MurC enzyme using oxygen isotope analyses demonstrated that the enzyme-catalyzed reaction proceeds through an acyl phosphate UNAM intermediate prior to L-alanine addition.; GO: 0005524 ATP binding, 0008763 UDP-N-acetylmuramate-L-alanine ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm. |
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase; InterPro: IPR005757 The tripeptide L-ananyl-gamma-D-glutamyl-meso-diaminopimelic acid is efficiently re-cycled during the formation of bacterial cell wall murein | Back alignment and domain information |
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Probab=100.00 E-value=1.4e-37 Score=267.81 Aligned_cols=397 Identities=23% Similarity=0.293 Sum_probs=280.8 Q ss_pred HHHHHHHCCEEECCCCCCEEEEEEEECCCCCC--CCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCE Q ss_conf 88998727999526887147467740222378--9888971688747688899999869889998552124554469728 Q gi|254781101|r 8 HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAP--QEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85 (472) Q Consensus 8 ~~l~~~~~g~~~~~~~~~~i~~i~~dSr~v~~--g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~~~ 85 (472) T Consensus 38 ST~LE~~GIe~~~g----------fD~~QL~~~~pD~~vi-GNa~~RG~p~VE~vL~~nl~Y~-------------SGPQ 93 (459) T TIGR01081 38 STLLEAQGIEIIEG----------FDAAQLEPFKPDLVVI-GNAMKRGNPCVEAVLEKNLPYT-------------SGPQ 93 (459) T ss_pred HHHHHHCCCEEECC----------CCHHHCCCCCCCEEEE-CCCCCCCCHHHHHHHHCCCCCC-------------CCCC T ss_conf 68887557303227----------7844400348887998-4633167446789872689502-------------1751 Q ss_pred EEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC-----CCCCHHHHHCCCCCCCHHCC----- Q ss_conf 99599899999999999830699399983036542012334677775201-----12221221101457410001----- Q gi|254781101|r 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-----TYACIGSYNNHIGVPLTLAR----- 155 (472) Q Consensus 86 i~v~d~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~-----~~~t~gn~Nn~iGvpltll~----- 155 (472) T Consensus 94 WL~d~~L----------~---drWVlaV~GTHGKTTT~~M~~WvLE~~G~~pGFliGGv~gNF----gvSArLg~~pr~d 156 (459) T TIGR01081 94 WLHDFVL----------R---DRWVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGGVPGNF----GVSARLGETPRQD 156 (459) T ss_pred HHHHHHH----------H---CCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCC----CEEEECCCCCCCC T ss_conf 0563342----------1---342789507886046889999999863798872673424534----2142068775667 Q ss_pred CCCCCHHHHHCCCCCCCC--CCCCCCCCC--CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHH Q ss_conf 232214443015664433--211212232--3220255531210123444578888654331037622101210134246 Q gi|254781101|r 156 MPVDVDFGIFELGMSHLG--EIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231 (472) Q Consensus 156 ~~~~~~~~V~E~g~~~~g--ei~~L~~i~--~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~ 231 (472) T Consensus 157 p~~~S~fFviEAD--EYD~AFFDKRSKFVHY~PRTlvlNNleFDHADIFddL~AI~~QFHhlvR~vP~~G~i~~~~~~~~ 234 (459) T TIGR01081 157 PNSQSPFFVIEAD--EYDTAFFDKRSKFVHYRPRTLVLNNLEFDHADIFDDLKAIQRQFHHLVRTVPGEGLILAPERDQS 234 (459) T ss_pred CCCCCCEEEEECC--CCCCCCCCCCCCEEECCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEEECCCHHHH T ss_conf 4546875799535--65651002543312027600145155544455787689987403068896468864843501468 Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHCCCC Q ss_conf 89987520123333322222222222223442113465100124565432-21222222223333221035676510121 Q gi|254781101|r 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADV 310 (472) Q Consensus 232 ~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~~~~~~~~~~~~~~~~~~-~~~l~~~G~hnv~NalaAia~~~~lGi~~ 310 (472) T Consensus 235 l~~~l~~GCWs~~e---~~G--~~~~W~A~~~--~~D~S~f~Vll~G~~vg~VkW~lvG~HN~~NaL~aIAAArHvGV~~ 307 (459) T TIGR01081 235 LKDTLAKGCWSEQE---FLG--EQGEWQAEKI--TADASEFEVLLDGEKVGEVKWSLVGEHNMHNALMAIAAARHVGVAI 307 (459) T ss_pred HHHHHHHCCCCCHH---CCC--CCCCHHHHHH--CCCCHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCH T ss_conf 99998606872011---246--7775057654--0451000220178436776533304600135899998742167687 Q ss_pred HHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEC----CHHHCCCCHH Q ss_conf 034554311476644331010003653113310002565321012577787411102687138851----2354171058 Q gi|254781101|r 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG----DMCEMGELSQ 386 (472) Q Consensus 311 ~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG----~m~ELG~~~~ 386 (472) T Consensus 308 ~~Ac~ALG~F~N~k---RRlE~kG~~Ng~TVYDD-FAHHP~AI~~Tl~~LR~k-VGG~~rIlAVLEPRSnTMK-lG~~K~ 381 (459) T TIGR01081 308 EDACEALGSFVNAK---RRLELKGEANGVTVYDD-FAHHPTAIEATLAALRDK-VGGGARILAVLEPRSNTMK-LGVHKD 381 (459) T ss_pred HHHHHHHCCCCCCC---EEEEEEEEEEEEEEECC-CCCCHHHHHHHHHHHHHH-CCCCCEEEEEECCCCCCCC-CCCCHH T ss_conf 89998703200120---01567211313787327-667868999999998752-3997069998778744100-343255 Q ss_pred HHHHHHHHHHHHCCCCEEEEECCC-HHH-HHHHCCC-CCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHH Q ss_conf 999999999986499899998803-898-9985113-7979997898999999998447898999977132548999999 Q gi|254781101|r 387 SFHIDLAEVLSLYNISHVWLSGFH-VLA-LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 (472) Q Consensus 387 ~~h~~i~~~~~~~~~d~v~~~G~~-~~~-~~~~~~~-~~~~~~~~~~e~a~~~l~~~~~~gdiVLiKGSr~~~le~iv~~ 463 (472) T Consensus 382 ~----la~sL~--~AD~Vf~~~p~~~~W~V~e~~~~~~~p~~~~~~~D~~v~~ivk~A~~gD~ILVM-SNG-gFgGIH~K 453 (459) T TIGR01081 382 D----LAPSLG--RADEVFLLQPEQIPWEVAEVAEQCVQPANVSADLDELVAMIVKEAQPGDHILVM-SNG-GFGGIHGK 453 (459) T ss_pred H----HHHHHH--HCCEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE-ECC-CCCHHHHH T ss_conf 6----667666--003565316898870599999860240211010789999999605888758997-468-86406899 Q ss_pred HHHHC Q ss_conf 99850 Q gi|254781101|r 464 LLEEF 468 (472) Q Consensus 464 L~~~~ 468 (472) T Consensus 454 lL~~L 458 (459) T TIGR01081 454 LLDAL 458 (459) T ss_pred HHHHC T ss_conf 99852 |
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase is an essential enzyme in this process which links the tripeptide to UDP-N-acetylmuramate.; GO: 0016874 ligase activity, 0007047 cell wall organization and biogenesis. |
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=823.40 Aligned_cols=447 Identities=30% Similarity=0.438 Sum_probs=414.6 Q ss_pred CCCCCCHHHHHHHHCCEEECCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCC Q ss_conf 95435678899872799952688714746774022237898889716887476888999998698899985521245544 Q gi|254781101|r 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 (472) Q Consensus 1 m~~~~~~~~l~~~~~g~~~~~~~~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~ 80 (472) T Consensus 1 m~~~-~l~~ia~~~~g~l~~~--d~~i~~i~~DSR~v~~g~lFvAl~G~~~DGh~fi~~Ai~~GA~aiv~~~~~-----~ 72 (452) T PRK10773 1 MISV-TLSQLADILNAELQGA--DITIDAVTTDTRKVTPGCLFVALKGERFDAHDFADQAKAAGAGALLVSRPL-----D 72 (452) T ss_pred CCCC-CHHHHHHHHCCEEECC--CCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCC-----C T ss_conf 9647-6999999869999889--815778996587179998899944798997999999998699899984766-----8 Q ss_pred CCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCC Q ss_conf 69728995998999999999998306993999830365420123346777752011222122110145741000123221 Q gi|254781101|r 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 (472) Q Consensus 81 ~~~~~i~v~d~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~ 160 (472) T Consensus 73 ~~~~~i~V~d~~~al~~la~~~~~~~~~~vIgITGSnGKTTtk~~i~~iL~~~g~~~~t~gn~n~~iG~p~tl~~~~~~~ 152 (452) T PRK10773 73 IDLPQLIVKDTRLAFGQLAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPLTLLRLTPEY 152 (452) T ss_pred CCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCHH T ss_conf 99998998999999999999875159975899991699625999999999972884124565268878660765079213 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCC Q ss_conf 44430156644332112122323220255531210123444578888654331037622101210134246899875201 Q gi|254781101|r 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 (472) Q Consensus 161 ~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~ 240 (472) T Consensus 153 ~~~v~E~g~~~~gei~~~~~~~~pdiaviTNI~~dHLd~~gs~e~~~~aK~~Lf~~l~~~g~~IlN~Dd~~~~~~~~~~~ 232 (452) T PRK10773 153 DYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFTGLPENGIAIMNADNNDWLNWQSVIG 232 (452) T ss_pred HHHHHHHCCCCCCHHHHHHCCCCCCEEEEEECCHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHC T ss_conf 35785323798535676640026675999842477654057699999999999817887989999798767999999837 Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHC Q ss_conf 2333332222222-222222344211346510012456543221222222223333221035676510121034554311 Q gi|254781101|r 241 ALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 (472) Q Consensus 241 ~~~~~~i~~~g~~-~~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~ 319 (472) T Consensus 233 ~---~~v~~~~~~~~~~d~~~~~i~~~~~g~~f~l~~~~~~~~v~l~l~G~hnv~NalaAiava~~lG~~~~~i~~~L~~ 309 (452) T PRK10773 233 S---RKVWRFSPNAANSDFTATNIHVTSHGTEFTLHTPTGSVDVLLPLPGRHNIANALAAAALAMSVGATLDAVKAGLAN 309 (452) T ss_pred C---CEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 9---8289980687776189999999189418999967951899970761768998999999999859999999999972 Q ss_pred CCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHC Q ss_conf 47664433101000365311331000256532101257778741110268713885123541710589999999999864 Q gi|254781101|r 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 (472) Q Consensus 320 ~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~ 399 (472) T Consensus 310 ~~~v~GRme~i~~---~~g~~iIdDsYNAnP~Sm~aal~~l~~~~----~~ki~VLGdM~ELG~~s~~~H~~v~~~~~~~ 382 (452) T PRK10773 310 LKAVPGRLFPIQL---AENQLLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAESEACHRQVGEAAKAA 382 (452) T ss_pred CCCCCCCEEEEEC---CCEEEEEEECCCCCHHHHHHHHHHHHHCC----CCEEEEECCHHHCCCHHHHHHHHHHHHHHHC T ss_conf 8998674079973---87089997425699799999999997577----9769998773772857899999999999976 Q ss_pred CCCEEEEECCCHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCE--EEEECCCHHHHHHHHHHHHHHC Q ss_conf 99899998803898998511379799978989999999984478989--9997713254899999999850 Q gi|254781101|r 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEF 468 (472) Q Consensus 400 ~~d~v~~~G~~~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~~~~gdi--VLiKGSr~~~le~iv~~L~~~~ 468 (472) T Consensus 383 ~id~v~~vG~~~~~~~~~~~~---~~~f~~~~~~~~~l~~~l~~~~~~~vLvKGSr~~~le~iv~~L~~~~ 450 (452) T PRK10773 383 GIDRVLSVGKLSQAISTASGV---GEHFADKTALIARLKALLAEQQVITILVKGSRSAAMEEVVRALQEKG 450 (452) T ss_pred CCCEEEEECHHHHHHHHHCCC---CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHC T ss_conf 999999988789999874187---63369999999999988744998489998575114999999999625 |
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>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=805.25 Aligned_cols=453 Identities=25% Similarity=0.339 Sum_probs=411.9 Q ss_pred CCHHHHHHHHCCEEECCC--CCCEEEEEEEECCCCC--CCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCC Q ss_conf 567889987279995268--8714746774022237--898889716887476888999998698899985521245544 Q gi|254781101|r 5 WTFHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 (472) Q Consensus 5 ~~~~~l~~~~~g~~~~~~--~~~~i~~i~~dSr~v~--~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~ 80 (472) T Consensus 3 ~~~~~i~~~~g~~~~g~~~~~~~~I~~i~tDSR~l~~~~~~LFvAL~Ger~DGH~fi~~A~~~GA~~~vv~~~~~~~~~~ 82 (824) T PRK11930 3 ISIEELIRVLGANRVGGKTEFDAFIDQLLIDSRSLSFPENTLFFALKGKRNDGHRYIQELYEKGVRNFVVSEIPKDLMEK 82 (824) T ss_pred EEHHHHHHHHCCEEECCCCCCCCEECEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCC T ss_conf 40999998639788578888883236399358876579986899956788887999999998899099994566554557 Q ss_pred CCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCC Q ss_conf 69728995998999999999998306993999830365420123346777752011222122110145741000123221 Q gi|254781101|r 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 (472) Q Consensus 81 ~~~~~i~v~d~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~ 160 (472) T Consensus 83 ~~~~~i~V~Dtl~ALq~LA~~~R~~~~~~VIgITGSnGKTttKe~L~~iLs~~~~v~~T~gn~Nn~IGvPLTll~l~~~~ 162 (824) T PRK11930 83 KPANFLIVKNPLKALQKLAAYYRKQFDIPIIGITGSNGKTIVKEWLYQLLSPDYNIVRSPRSYNSQIGVPLSVWQMNEEH 162 (824) T ss_pred CCCCEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHCCCCCC T ss_conf 88778998989999999999999748998999949997899999999997457868528876687425899986498458 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCC Q ss_conf 44430156644332112122323220255531210123444578888654331037622101210134246899875201 Q gi|254781101|r 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 (472) Q Consensus 161 ~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~ 240 (472) T Consensus 163 e~aVlEmG~s~~GEI~~L~~i~~P~igVITNIg~aHle~fgS~e~ia~eK~eL~~~~---~~~i~n~d~~~~~~~~~~~~ 239 (824) T PRK11930 163 ELGIFEAGISTMGEMEALQKIIKPTIGILTNIGGAHQENFFDIQEKCMEKLKLFKDC---DVIIYNGDNEEISNCIHKSN 239 (824) T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHHCC---CCEEEECCCHHHHHHHHHHC T ss_conf 089999078981469999535279999990750987664589999999999976217---81799468578999997633 Q ss_pred CCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHC Q ss_conf 23333322222-22222222344211346510012456543221222222223333221035676510121034554311 Q gi|254781101|r 241 ALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 (472) Q Consensus 241 ~~~~~~i~~~g-~~~~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~ 319 (472) T Consensus 240 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~G~h~v~NAlaA~ava~~lGv~~~~i~~~L~~ 317 (824) T PRK11930 240 LTR--REIAWSRTDSEAPLYISRSEKKEFHTHIQYRYLGMDRYFQIPFIDDASIENSIHCLAVALYLMYSADQITKRFAR 317 (824) T ss_pred CCC--CEEEEECCCCCCCEEEEEEEECCCCEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 676--289983478665346665430588169999968906999936998899999999999999839999999999841 Q ss_pred CCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHC Q ss_conf 47664433101000365311331000256532101257778741110268713885123541710589999999999864 Q gi|254781101|r 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 (472) Q Consensus 320 ~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~ 399 (472) T Consensus 318 ~~p~~~Rlev~~---g~~g~~iIdDsYNAnP~Sm~aALdtL~~~~~--~~RrI~ILgDMlElG~~~~~ly~~Vg~l~~~~ 392 (824) T PRK11930 318 LEPVEMRLEVKE---GINNCTLINDSYNSDLASLDIALDFLERRKQ--SKKKTLILSDILQSGQSPEELYRKVAQLISSA 392 (824) T ss_pred CCCCCCEEEEEE---CCCCCEEEECCCCCCHHHHHHHHHHHHHCCC--CCCEEEEECCHHHCCCCCHHHHHHHHHHHHHC T ss_conf 896545137999---7998099956666998999999999974035--78569998774432876078999999999976 Q ss_pred CCCEEEEECCCHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHC Q ss_conf 998999988038989985113797999789899999999844789899997713254899999999850 Q gi|254781101|r 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 (472) Q Consensus 400 ~~d~v~~~G~~~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~~~~gdiVLiKGSr~~~le~iv~~L~~~~ 468 (472) T Consensus 393 ~i~~ligiG~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~iLikGar~~~~e~i~~~l~~~~ 460 (824) T PRK11930 393 KINRVIGIGEEISSEAKKFE-GIEKYFFKDTEAFLASLEKKKFSNELILIKGSRKFQFEQISERLELKV 460 (824) T ss_pred CCCEEEEECHHHHHHHHHCC-CCCEEEECCHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCC T ss_conf 88789981889999998645-776589568999974274113689779980554566899999996455 |
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>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=769.01 Aligned_cols=450 Identities=39% Similarity=0.551 Sum_probs=416.2 Q ss_pred CCCHHHHHHHHCCEEECCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC Q ss_conf 35678899872799952688714746774022237898889716887476888999998698899985521245544697 Q gi|254781101|r 4 LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83 (472) Q Consensus 4 ~~~~~~l~~~~~g~~~~~~~~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~ 83 (472) T Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~~~~v~~Dsr~v~~g~lF~al~G~~~Dgh~fi~~A~~~GA~a~~v~r~~~~~~~~-~~ 79 (451) T COG0770 2 LLTLDELADILGGALVGADP-VVVSGVSIDSRKVKPGDLFVALKGERFDGHDFIEQALAAGAAAVLVARPVLPPAIP-LV 79 (451) T ss_pred CCCHHHHHHHHCCCCCCCCC-CCEEEEEEECCCCCCCCEEEECCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCCCC-CC T ss_conf 30089999971781136740-00106995246678885238716763564221889984597799992576786656-52 Q ss_pred CEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHH Q ss_conf 28995998999999999998306993999830365420123346777752011222122110145741000123221444 Q gi|254781101|r 84 PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163 (472) Q Consensus 84 ~~i~v~d~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~ 163 (472) T Consensus 80 -~~~V~d~~~al~~la~~~~~~~~~kvIaITGS~GKTTTKe~la~iL~~~~~v~~t~gn~Nn~iGlPltll~~~~~~e~~ 158 (451) T COG0770 80 -VLLVLDTLEALGKLAKAYRQKFNAKVIAITGSNGKTTTKEMLAAILSTKGKVHATPGNFNNEIGLPLTLLRLPADTEYA 158 (451) T ss_pred -EEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCEEECCCCCCCCCCCCHHHHHHCCCCCCEE T ss_conf -5875999999999999999736996899958997076999999998636807467876686544156897477766479 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCC Q ss_conf 30156644332112122323220255531210123444578888654331037622101210134246899875201233 Q gi|254781101|r 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 (472) Q Consensus 164 V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~ 243 (472) T Consensus 159 VlEmG~~~~GeI~~l~~i~~P~iavItnIg~aHle~fgs~e~Ia~aK~Ei~~~~~~~g~ai~n~d~~~~~~~~~~~---~ 235 (451) T COG0770 159 VLEMGMNHPGEIAELSEIARPDIAVITNIGEAHLEGFGSREGIAEAKAEILAGLRPEGIAILNADNPLLKNWAAKI---G 235 (451) T ss_pred EEECCCCCCCCHHHHHCCCCCCEEEECCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHC---C T ss_conf 9986899777478884405898899838059998742889999999999981568786799878617778777635---7 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCC Q ss_conf 33322222222222223442113465100124565432212222222233332210356765101210345543114766 Q gi|254781101|r 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323 (472) Q Consensus 244 ~~~i~~~g~~~~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~ 323 (472) T Consensus 236 ~~~v~~fg~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~l~~~G~hn~~NalaA~a~a~~lG~~~e~i~~~L~~~~~~ 315 (451) T COG0770 236 NAKVLSFGLNNGGDFRATNIHLDEEGSSFTLDIEGGEAEFELPLPGRHNVTNALAAAALALELGLDLEEIAAGLKELKPV 315 (451) T ss_pred CCCEEEECCCCCCCEEEEEEEECCCCEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC T ss_conf 87579976887775256778983885079998068337999457847689999999999998199999999999863788 Q ss_pred CCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCE Q ss_conf 44331010003653113310002565321012577787411102687138851235417105899999999998649989 Q gi|254781101|r 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 (472) Q Consensus 324 ~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~ 403 (472) T Consensus 316 ~gR~~~~---~~~~g~~iIdD~YNAnp~sm~aai~~l~~~~~~---~~i~VlGdM~ELG~~s~~~H~~v~~~~~~~~~d~ 389 (451) T COG0770 316 KGRLEVI---LLANGKTLIDDSYNANPDSMRAALDLLAALPGR---KGIAVLGDMLELGEESEELHEEVGEYAVEAGIDL 389 (451) T ss_pred CCCCEEE---ECCCCCEEEECCCCCCHHHHHHHHHHHHHCCCC---CCEEEECCHHHHCCCHHHHHHHHHHHHHHCCCEE T ss_conf 8663367---648981899737889989999999999637668---8579947766638548999999999998569509 Q ss_pred EEEECCCHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHH Q ss_conf 9998803898998511379799978989999999984478989999771325489999999985 Q gi|254781101|r 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467 (472) Q Consensus 404 v~~~G~~~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~~~~gdiVLiKGSr~~~le~iv~~L~~~ 467 (472) T Consensus 390 v~~~G~~~~~i~~~~~~~--~~~f~~~~~l~~~l~~~l~~gd~vLvKgSr~~~le~vv~~l~~~ 451 (451) T COG0770 390 VFLVGELSKAIAEALGNK--GIYFADKEELITSLKALLRKGDVVLVKGSRGMKLEKVVDALLGK 451 (451) T ss_pred EEEECCCHHHHHHHCCCC--EEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCC T ss_conf 999762069999865777--58607779999999985677878999737646579999998319 |
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>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=630.72 Aligned_cols=422 Identities=26% Similarity=0.321 Sum_probs=354.7 Q ss_pred CCHHHHHHHHCCEEECCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC Q ss_conf 56788998727999526887147467740222378988897168874768889999986988999855212455446972 Q gi|254781101|r 5 WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84 (472) Q Consensus 5 ~~~~~l~~~~~g~~~~~~~~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~~ 84 (472) T Consensus 3 ~~l~~ll~~~~~---~~~~d~~i~gis~DSR~v~~g~lFval~G~~~DGh~fi~~Ai~~GA~avv~~~~~-----~~~~~ 74 (481) T PRK00139 3 MKLRDLLAPLKA---DHVLDVEITGLTYDSRKVKPGDLFVALPGHKVDGRDFIAQAIANGAAAVVAEPDV-----EAAVP 74 (481) T ss_pred CCHHHHHHHCCC---CCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCC-----CCCCC T ss_conf 468998623665---6788877779996377189997899916677898999999998699799984776-----78985 Q ss_pred EEEECCHHHHHHHHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCC-----------CC Q ss_conf 899599899999999999830--69939998303654201233467777520112221221101457-----------41 Q gi|254781101|r 85 VFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV-----------PL 151 (472) Q Consensus 85 ~i~v~d~~~al~~la~~~~~~--~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGv-----------pl 151 (472) T Consensus 75 ~i~V~d~~~al~~la~~~y~~~~~~l~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~igT~g~~~~~~~~~~~lTTP~~l 154 (481) T PRK00139 75 VIVVPDLRRALALLAAAFYGNPSDKLKLIGVTGTNGKTTTAYLIAQILRLLGKKAALIGTLGNGLGGTLIPSGLTTPEAL 154 (481) T ss_pred EEEECCHHHHHHHHHHHHHCCCHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCEECCCEECCCCCCCCCHH T ss_conf 99989999999999999870804318089995899843499999999987498631430221141873036678988768 Q ss_pred HHCCC-----CCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHC Q ss_conf 00012-----3221444301566443321121223232202555312101234445788886543310376221012101 Q gi|254781101|r 152 TLARM-----PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226 (472) Q Consensus 152 tll~~-----~~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN 226 (472) T Consensus 155 ~L~~~l~~~~e~g~~~~vmEvS-Shgl~q~Rv~g-i~fdiav~TNIs~DHLD~Hgs~e~Y~~aK~~Lf~~~~~-~~aViN 231 (481) T PRK00139 155 DLQRLLAEAVDAGATHVAMEVS-SHALDQGRVDG-LTFDVAVFTNLTRDHLDYHGTMEDYFAAKALLFAELGL-KAAVIN 231 (481) T ss_pred HHHHHHHHHHHCCCCEEEEEEC-HHHHHHCCCCC-CCCCEEEEECCCHHHHCCCCCHHHHHHHHHHHHHCCCC-CCEEEE T ss_conf 8999999999879977999843-03555221348-87568999657677853437899999999999746578-824994 Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 34246899875201233333222222-22222223442113465100124565432212222222233332210356765 Q gi|254781101|r 227 YDDSFFELLKAKSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 (472) Q Consensus 227 ~Dd~~~~~l~~~~~~~~~~~i~~~g~-~~~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~ 305 (472) T Consensus 232 ~DD~~~~~~~~~~~~----~~it~g~~~~~ad~~~~~i~~~~~g~~f~l~~~~~~~~v~l~l~G~hNv~NalaAiava~~ 307 (481) T PRK00139 232 ADDEVGARLLAALPA----TVVTYSIEDHGADLRATDIEFSAQGVSFTLVTPWGEGEVESPLIGRFNVSNLLAAIAALLA 307 (481) T ss_pred CCCHHHHHHHHHCCC----CCCEECCCCCCCEEEEEEEEECCCCEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHHH T ss_conf 688899999997178----8525404788860899999984896199999589379999678878889879999999998 Q ss_pred HCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCH Q ss_conf 10121034554311476644331010003653113310002565321012577787411102687138851235417105 Q gi|254781101|r 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 (472) Q Consensus 306 lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~ 385 (472) T Consensus 308 lGi~~~~i~~~L~~~~~v~GRmE~i~---~~~~~~vivD-YAHtP~sl~~~L~~lr~~~---~~rli~VfG----~gG~R 376 (481) T PRK00139 308 LGVPLEDILKALAKLRPVPGRMERVG---AGGGPLVIVD-YAHTPDALEKVLDALRPHA---KGRLICVFG----CGGDR 376 (481) T ss_pred CCCCHHHHHHHHHCCCCCCCCCEEEE---CCCCCEEEEE-CCCCHHHHHHHHHHHHHHC---CCCEEEEEC----CCCCC T ss_conf 39898999999834999999868998---7999689997-6899899999999998764---898699989----86777 Q ss_pred HHHHHHHHHHHHHCCCCEEEEECC-----CHHHHHHHCCC---CCCEEEECCHHHHHHHHHHHCCCCCEEEE--ECC Q ss_conf 899999999998649989999880-----38989985113---79799978989999999984478989999--771 Q gi|254781101|r 386 QSFHIDLAEVLSLYNISHVWLSGF-----HVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KSS 452 (472) Q Consensus 386 ~~~h~~i~~~~~~~~~d~v~~~G~-----~~~~~~~~~~~---~~~~~~~~~~e~a~~~l~~~~~~gdiVLi--KGS 452 (472) T Consensus 377 d~~KR~~mg~ia~~~ad~vi~T~DnPr~Edp~~I~~~i~~g~~~~~~~~i~dR~~AI~~ai~~a~~~d~vliaGKGh 453 (481) T PRK00139 377 DKGKRPLMGAIAERLADVVIVTSDNPRSEDPAAIIADILAGITHANAVVIEDRAEAIKYAIALAKPGDVVLIAGKGH 453 (481) T ss_pred CCHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 70141899999997199899939998998999999999826987992897899999999998559999999973587 |
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>TIGR02068 cya_phycin_syn cyanophycin synthetase; InterPro: IPR011810 Cyanophycin is an insoluble storage polymer for carbon, nitrogen, and energy, found in most Cyanobacteria | Back alignment and domain information |
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Probab=100.00 E-value=2e-44 Score=313.29 Aligned_cols=436 Identities=23% Similarity=0.291 Sum_probs=283.2 Q ss_pred CHHHHH-HHHCCEEEC-CCCCCEEEEEEEECCCC--------------CCCCEEEECC--------------CCCCCHHH Q ss_conf 678899-872799952-68871474677402223--------------7898889716--------------88747688 Q gi|254781101|r 6 TFHDLL-QAIQGHSIG-IVPQGFVNGISIDSRSI--------------APQEAFFAIK--------------GPHYDGHD 55 (472) Q Consensus 6 ~~~~l~-~~~~g~~~~-~~~~~~i~~i~~dSr~v--------------~~g~lFval~--------------g~~~DGh~ 55 (472) T Consensus 334 Ti~eLiG~~~N~DP~RG~Gh~~~Ltki~~D~~~~~~L~kqG~~ldsVp~kG~~-V~Lr~~ANLSTGG~A~DrTDeiHP~~ 412 (876) T TIGR02068 334 TIEELIGEQINKDPLRGDGHDKPLTKIRLDSVAKLVLAKQGLTLDSVPAKGRI-VYLRATANLSTGGVAIDRTDEIHPEN 412 (876) T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCHHHCCCE-EEEECCCCCCCCCEEEECCCCCCHHH T ss_conf 07664057646777888866778883433079999998549751154540978-88632477445873162257538458 Q ss_pred HHHHHHHCCCEEE--------EECCCCCCCCCCCCCCEEEECC-HHHHH---------HHHHHHH-------HHCCCCCE Q ss_conf 8999998698899--------9855212455446972899599-89999---------9999999-------83069939 Q gi|254781101|r 56 FILHAVQKGAGLV--------VVNTDMVASIGSLSIPVFGVDD-VLGAL---------NKLAVAA-------RLRSKATI 110 (472) Q Consensus 56 ~i~~A~~~Ga~~~--------i~~~~~~~~~~~~~~~~i~v~d-~~~al---------~~la~~~-------~~~~~~~v 110 (472) T Consensus 413 -~~~a~-~aAk~iGLDiaG~D~v~~di~~PL~~~~G~iVEVNAaPGlrMH~~PS~G~pR~Va~Ai~d~LFP~~~~grIPi 490 (876) T TIGR02068 413 -IAIAV-RAAKIIGLDIAGVDVVTEDISKPLRDTDGAIVEVNAAPGLRMHLAPSQGKPRNVAKAIVDMLFPEEDDGRIPI 490 (876) T ss_pred -HHHHH-HHHHEEEEEECCEEECCCCCCCCHHHCCCEEEEEECCCCHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCEEE T ss_conf -99998-7520000012122200310003745459729998567663444677774698710268752288878983448 Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCC---CHHHHHCCC----C---CCCHHCC--CCCCCHHHHHCCCCCCCCCCCCC Q ss_conf 9983036542012334677775201122---212211014----5---7410001--23221444301566443321121 Q gi|254781101|r 111 IAITGSVGKTTTKEMLTIALSSIKKTYA---CIGSYNNHI----G---VPLTLAR--MPVDVDFGIFELGMSHLGEIRFL 178 (472) Q Consensus 111 I~ITGTnGKTTt~~~l~~iL~~~~~~~~---t~gn~Nn~i----G---vpltll~--~~~~~~~~V~E~g~~~~gei~~L 178 (472) T Consensus 491 V~vTGTNGKTt~~RL~Ahil~~~G~~vG~T~tDG~Yi~~~~v~~GDntGP~SAr~~L~d~~VdaAVLEta---rGGiLR~ 567 (876) T TIGR02068 491 VAVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDGVYIGKKLVEKGDNTGPKSARRILADPTVDAAVLETA---RGGILRE 567 (876) T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCEEECCEEEECCCCCCHHHHHHCCCCCCEEEEEEECC---CCCCCCC T ss_conf 8872689835578899999985698276420376775576662478987157301227888018998627---8722066 Q ss_pred -CCCCCCCEEEEEEEC-CCHHHHHH--HHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCC Q ss_conf -223232202555312-10123444--57888865433103762210121013424689987520123333322222222 Q gi|254781101|r 179 -THLVRPHIAVITTIA-PAHLSNFS--GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254 (472) Q Consensus 179 -~~i~~P~iaiiTNI~-~dHld~~~--s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~ 254 (472) T Consensus 568 GLafD~c~VGvVtNi~~~DHLG~~dInt~e~La~Vk~vv~e~V~pDG~AVLNA~DP~va~mA~~~~G----~i~YF~~~~ 643 (876) T TIGR02068 568 GLAFDRCDVGVVTNIADGDHLGLGDINTIEDLADVKRVVVEVVKPDGYAVLNADDPMVAAMAEKCKG----KIAYFSMDP 643 (876) T ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHEEEEEEEECCCCCEEECCCCCHHHHHHHHCCC----CEEEEECCC T ss_conf 5010321416898337766357886004788875101267888589827864788557999842896----189862186 Q ss_pred CCCCCCCC-----CCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCC Q ss_conf 22222344-----2113465100124565--------4322122222222333322103567651012103455431147 Q gi|254781101|r 255 NADFQLRK-----WKQCSEQSWMEVQLQG--------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 (472) Q Consensus 255 ~ad~~~~~-----i~~~~~~~~~~~~~~~--------~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~ 321 (472) T Consensus 644 ~~~~~~~H~~~G~~avy~~~G~ivia~G~~~~~~~~~~~iPlT~GG~~~F~ieN~LAA~aAA~~~~v~ie~Ir~G~~tF~ 723 (876) T TIGR02068 644 NNPTVAKHIAKGGRAVYYENGYIVIAKGGAEVAIARIAEIPLTMGGRVAFQIENALAAVAAAWALGVDIELIRAGIRTFK 723 (876) T ss_pred CHHHHHHHHHCCCEEEEEECCEEEEEECCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC T ss_conf 25899999855989999867879997478322678997288675771578888999999998534898999998987330 Q ss_pred ----CCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHH Q ss_conf ----6644331010003653113310002565321012577787411102687138851235417105899999999998 Q gi|254781101|r 322 ----PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397 (472) Q Consensus 322 ----~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~ 397 (472) T Consensus 724 ~d~~~~PGrfnLFn~~---~~~~lvD--Y~HNp~~~~av~~a~~~~~---A~rr~gV~ggp---GDR~De~l~~~G~~~g 792 (876) T TIGR02068 724 ADAAQAPGRFNLFNLG---GAHVLVD--YGHNPAAIEAVVEAIRNLP---ARRRIGVIGGP---GDRRDEDLVKLGEILG 792 (876) T ss_pred CHHHCCCCEEEEEECC---CCEEEEE--CCCCHHHHHHHHHHHHHCC---CCCEEEEEECC---CCCCHHHHHHHHHHHH T ss_conf 1010689503222258---8289996--5779789999999996178---78478998078---7786588999999975 Q ss_pred HCCCCEEEEEC-----------CCHHHHHHHCCCCC-CEEEEC---CHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHH Q ss_conf 64998999988-----------03898998511379-799978---9899999999844789899997713254899999 Q gi|254781101|r 398 LYNISHVWLSG-----------FHVLALKDALPRSI-HVHYSE---TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462 (472) Q Consensus 398 ~~~~d~v~~~G-----------~~~~~~~~~~~~~~-~~~~~~---~~e~a~~~l~~~~~~gdiVLiKGSr~~~le~iv~ 462 (472) T Consensus 793 ~-~FD~i~~keD~~~rGkR~~G~a~~Ll~~G~~~~~~~~~~i~~i~de~~Ai~~~L~~~~~GdL~vi~~e---~~~~a~~ 868 (876) T TIGR02068 793 G-AFDQIILKEDDDLRGKRARGEAAALLRQGLIQAAMRKAAIEEILDETEAIKAALDSLEAGDLVVILPE---SVERAIK 868 (876) T ss_pred H-CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC---CCHHHHH T ss_conf 4-06879996274535788873589999963530577656799998899999999842146886999702---1003566 Q ss_pred HHHH Q ss_conf 9998 Q gi|254781101|r 463 LLLE 466 (472) Q Consensus 463 ~L~~ 466 (472) T Consensus 869 ~i~~ 872 (876) T TIGR02068 869 LIEE 872 (876) T ss_pred HHHH T ss_conf 7665 |
The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. The polymer is made by this enzyme, cyanophycin synthetase, and degraded by cyanophycinase. Heterologously expressed cyanophycin synthetase in Escherichia coli produces a closely related, water-soluble polymer with some Arg replaced by Lys. It is unclear whether enzymes that produce soluble cyanophycin-like polymers in vivo in non-Cyanobacterial species should be designated as cyanophycin synthetase itself or as a related enzyme. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions .; GO: 0005524 ATP binding, 0016874 ligase activity, 0009059 macromolecule biosynthetic process. |
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=403.92 Aligned_cols=369 Identities=27% Similarity=0.366 Sum_probs=275.3 Q ss_pred CCCEEEEECCCCCCC------CCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC Q ss_conf 698899985521245------54469728995998999999999998306993999830365420123346777752011 Q gi|254781101|r 63 KGAGLVVVNTDMVAS------IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136 (472) Q Consensus 63 ~Ga~~~i~~~~~~~~------~~~~~~~~i~v~d~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~ 136 (472) T Consensus 66 ~~~d~vV~Sp~I~~~~p~~~~a~~~gi~v~~~--~-e~l~~~---~---~~~~~IaVtGTnGKTTtT~ll~~il~~~g~~ 136 (459) T PRK00421 66 KGADVVVVSSAIKPDNPELVAARELGIPVVRR--A-EMLAEL---M---RLRTSIAVAGTHGKTTTTSLLAHVLAEAGLD 136 (459) T ss_pred CCCCEEEECCCCCCCCHHHHHHHHCCCCEEEH--H-HHHHHH---H---HCCCEEEEECCCCCCHHHHHHHHHHHHCCCC T ss_conf 99999998998599899999999879979889--9-999999---8---2596499977888611899999999976998 Q ss_pred --CCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC Q ss_conf --222122110145741000123221444301566443321121223232202555312101234445788886543310 Q gi|254781101|r 137 --YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214 (472) Q Consensus 137 --~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~ 214 (472) T Consensus 137 ~~~~iGg~~~~-~~~~---~~~-~~~~~~V~E~dE~d-~--sf--~~~~P~iavitNI~~DHLD~h~s~e~Y~~ak~~~~ 206 (459) T PRK00421 137 PTFIIGGILNA-AGTN---ARL-GSSDYFVAEADESD-R--SF--LKLHPDIAVVTNIDADHLDYYGDFEDLKDAFQEFA 206 (459) T ss_pred CEEEECCCCCC-CCCC---CCC-CCCCEEEEEECCCC-C--CH--HHCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHH T ss_conf 74885753355-6654---525-88988999953541-4--36--44589899991798778656018999999999999 Q ss_pred CCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC Q ss_conf 3762210121013424689987520123333322222222222223442113465100124565432-212222222233 Q gi|254781101|r 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMA 293 (472) Q Consensus 215 ~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~~~~~~~~~~~~~~~~~~-~~~l~~~G~hnv 293 (472) T Consensus 207 ~~~~~~g~~ViN~DD~~~~~l~~~~~~----~vitfg~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~~~~~l~l~G~HNv 282 (459) T PRK00421 207 HNLPFYGALVACGDDPELRELLPRVDR----PVITYGFSEDADFRAENIRQDGGGSHFDVLREGEDLGDFTLPLPGRHNV 282 (459) T ss_pred HCCCCCCCEECCCCCHHHHHHHHHCCC----CCEEECCCCCCCEEEEEEEEECCCEEEEEEECCCEEEEEEECCCHHHHH T ss_conf 719954721146879899998774388----6002356876666788899948923899983893788999568638899 Q ss_pred CCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEE Q ss_conf 33221035676510121034554311476644331010003653113310002565321012577787411102687138 Q gi|254781101|r 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 (472) Q Consensus 294 ~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~ 373 (472) T Consensus 283 ~NalAAia~a~~lGi~~e~i~~aL~~F~Gv~~R~E~v---~~~~gv~~idD-YAH~P~~i~a~l~alr~~~~--~~rii~ 356 (459) T PRK00421 283 LNALAAIAVALELGIDDEAIRKALATFKGVKRRFEEK---GEVNGVVLIDD-YAHHPTEIKATLKAARQKYP--DKRIVA 356 (459) T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEE---EECCCEEEEEE-CCCCHHHHHHHHHHHHHHCC--CCCEEE T ss_conf 9999999999984999999999997535745027998---72288479973-56893899999999998768--996699 Q ss_pred EECCHHHCCC--CHHHHHHHHHHHHHHCCCCEEEEE-----------CCCHHHHHHHCCCC--CCEEEECCHHHHHHHHH Q ss_conf 8512354171--058999999999986499899998-----------80389899851137--97999789899999999 Q gi|254781101|r 374 VLGDMCEMGE--LSQSFHIDLAEVLSLYNISHVWLS-----------GFHVLALKDALPRS--IHVHYSETMDGLFLFIQ 438 (472) Q Consensus 374 VlG~m~ELG~--~~~~~h~~i~~~~~~~~~d~v~~~-----------G~~~~~~~~~~~~~--~~~~~~~~~e~a~~~l~ 438 (472) T Consensus 357 vfqP----h~~sR~~~~~~e~a~~l~--~aD~vil~~iy~a~E~~~~g~~~~~i~~~i~~~~~~~~~~~~~~~~ai~~~~ 430 (459) T PRK00421 357 VFQP----HRYSRTRDLFDEFAEVLS--DADEVILLDIYAAGEAPIPGVDSEDLARAIRKRGHVDVIFVPDVDDLAELLA 430 (459) T ss_pred EECC----CCHHHHHHHHHHHHHHHH--CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHH T ss_conf 9867----420548999999999987--1999998887588887657889999999998608988799699999999999 Q ss_pred HHCCCCCEEEEECCCHHHHHHHHHHHHHHC Q ss_conf 844789899997713254899999999850 Q gi|254781101|r 439 SSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 (472) Q Consensus 439 ~~~~~gdiVLiKGSr~~~le~iv~~L~~~~ 468 (472) T Consensus 431 ~~a~~gDvVL~~GaGd--~~~~~~~l~~~l 458 (459) T PRK00421 431 DVLQPGDLVLTMGAGD--ITKLARALLELL 458 (459) T ss_pred HHCCCCCEEEEECCCC--HHHHHHHHHHHH T ss_conf 8589989999979999--899999999965 |
|
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=391.97 Aligned_cols=355 Identities=21% Similarity=0.226 Sum_probs=257.1 Q ss_pred CCCEEEECCHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCH-HC----C Q ss_conf 9728995998999999999998-3069939998303654201233467777520112221221101457410-00----1 Q gi|254781101|r 82 SIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LA----R 155 (472) Q Consensus 82 ~~~~i~v~d~~~al~~la~~~~-~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvplt-ll----~ 155 (472) T Consensus 97 gi~i~--~eiel~~~~~~~~~~~~~~~~~iIaVTGTnGKTTTt~li~~iL~~~g~~~~~~GN----IG~p~l~~l~~~~~ 170 (501) T PRK02006 97 GIPVW--GELELFAQALAALGASRGYAPKVLAITGTNGKTTTTSLTGLLCERAGKKVAVAGN----ISPAALDKLAEAID 170 (501) T ss_pred CCCEE--EHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECC----CCCHHHHHHHHHHC T ss_conf 99587--6899999887630222356874899938996687999999999976997465256----46102677876422 Q ss_pred CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHH Q ss_conf 23221444301566443321121223232202555312101234445788886543310376221012101342468998 Q gi|254781101|r 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 (472) Q Consensus 156 ~~~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l 235 (472) T Consensus 171 ~~~~~d~~VlElSSfQ---Le~-~~~~~p~vaVilNIs~DHLD~h~s~e~Y~~aK~rif~---~~~~~V~n~DD~~~~~~ 243 (501) T PRK02006 171 AAALPDVWVLELSSFQ---LET-THTFAPDAATVLNITQDHLDWHGSMAAYAAAKGRIFG---PATVRVLNRDDALVMAM 243 (501) T ss_pred CCCCCCEEEEEECHHH---HCC-CCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHC---CCCEEEEECCCHHHHHH T ss_conf 5776868999966467---575-6557967899907886564442379999999998723---48559994888889987 Q ss_pred HHHCCCCCCCCCCCCCCCCC---CCCCCCCCC---------CCCC-CCCCCC--------CCCC----CCC-CCCCCCCC Q ss_conf 75201233333222222222---222234421---------1346-510012--------4565----432-21222222 Q gi|254781101|r 236 KAKSHALGIKTIYSFGKSKN---ADFQLRKWK---------QCSE-QSWMEV--------QLQG----KSM-EVVHHGIG 289 (472) Q Consensus 236 ~~~~~~~~~~~i~~~g~~~~---ad~~~~~i~---------~~~~-~~~~~~--------~~~~----~~~-~~~l~~~G 289 (472) T Consensus 244 ~~~~~~~--~~~~~fg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~l~G 321 (501) T PRK02006 244 APPAAAA--DAPVTFGLDEPAQDGDYGLLRENGMAWLVEAEDRDAADEPAPTRRRKKDAAPPPDIALKRLMPADALRIRG 321 (501) T ss_pred HHHCCCC--CEEEEECCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCHHHCCCCHHCCCCC T ss_conf 6650566--41688505775666540256237705787303221000000122102333444331011035520103567 Q ss_pred CCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 22333322103567651012103455431147664433101000365311331000256532101257778741110268 Q gi|254781101|r 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 (472) Q Consensus 290 ~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~ 369 (472) T Consensus 322 ~HN~~NalAA~a~a~~lGi~~e~i~~aL~~F~GlpHR~E~V---~~~~gv~~iNDSKaTN~~at~~Al~s~~-------~ 391 (501) T PRK02006 322 LHNAANALAALALARAIGLPAAPLLHGLREYRGEPHRVEVI---ATIDDVDYVDDSKGTNVGATVAALDGLA-------Q 391 (501) T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEE---EEECCEEEECCCCCCCHHHHHHHHHHCC-------C T ss_conf 20699999999999985998789876631557876525899---9967889973787789899999997078-------9 Q ss_pred CCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCC-CCEEEECCHHHHHHHHHHHCCCCCEEE Q ss_conf 7138851235417105899999999998649989999880389899851137-979997898999999998447898999 Q gi|254781101|r 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVV 448 (472) Q Consensus 370 r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~~-~~~~~~~~~e~a~~~l~~~~~~gdiVL 448 (472) T Consensus 392 ~iilI~GG-----~~K~~d~~~L~~~~~~~-~k~vil~G~~~~~i~~~l~~~~~~~~~~~~l~~Av~~a~~~a~~gd~VL 465 (501) T PRK02006 392 RVVLIAGG-----DGKGQDFSPLAAPVARW-ARAVVLIGRDAPAIRAALADTGVPLVDAATLEEAVRAAAELAQPGDAVL 465 (501) T ss_pred CEEEEEEC-----CCCCCCHHHHHHHHHHH-CEEEEEECCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCEEE T ss_conf 74999805-----77777979999999853-7099998989999999975179807985999999999997578979899 Q ss_pred EE---CC---------CHHHHHHHHHHHHHH Q ss_conf 97---71---------325489999999985 Q gi|254781101|r 449 VK---SS---------NSCGFYRLINLLLEE 467 (472) Q Consensus 449 iK---GS---------r~~~le~iv~~L~~~ 467 (472) T Consensus 466 lSPacaSfD~F~nyeeRG~~F~~~V~~L~~~ 496 (501) T PRK02006 466 LSPACASLDMFRNYAHRAQVFRAAVEELALD 496 (501) T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 8961103012069999999999999999985 |
|
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=335.79 Aligned_cols=354 Identities=23% Similarity=0.295 Sum_probs=263.8 Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC--CCCCHHHHHCCCCCCCHHCCCC Q ss_conf 46972899599899999999999830699399983036542012334677775201--1222122110145741000123 Q gi|254781101|r 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK--TYACIGSYNNHIGVPLTLARMP 157 (472) Q Consensus 80 ~~~~~~i~v~d~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~--~~~t~gn~Nn~iGvpltll~~~ 157 (472) T Consensus 88 e~~ipi~~r---~e~L~e---lm~~---~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iGG~~~~-~g~-----na~ 152 (459) T COG0773 88 ERGIPVISR---AEMLAE---LMRF---RTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIGGILKN-FGT-----NAR 152 (459) T ss_pred HCCCCEECH---HHHHHH---HHHC---CEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCC-CCC-----CCC T ss_conf 859981628---999999---9707---7169994788754089999999986799987997774455-776-----554 Q ss_pred C-CCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHH Q ss_conf 2-214443015664433211212232322025553121012344457888865433103762210121013424689987 Q gi|254781101|r 158 V-DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 (472) Q Consensus 158 ~-~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~ 236 (472) T Consensus 153 ~g~~~~fV~EADEsD-----~sFl~~~P~~aIvTNid~DH~D~y~~~~~i~~~F~~f~~~vp~~G~~v~~~dd~~l~~l~ 227 (459) T COG0773 153 LGSGDYFVAEADESD-----SSFLHYNPRVAIVTNIEFDHLDYYGDLEAIKQAFHHFVRNVPFYGRAVVCGDDPNLRELL 227 (459) T ss_pred CCCCCEEEEEECCCC-----CCCCCCCCCEEEEECCCCCCHHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHH T ss_conf 588864999951541-----650248897899807883400121899999999999998388665599978888899987 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHH Q ss_conf 5201233333222222222222234421134651001245654-322122222222333322103567651012103455 Q gi|254781101|r 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315 (472) Q Consensus 237 ~~~~~~~~~~i~~~g~~~~ad~~~~~i~~~~~~~~~~~~~~~~-~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~ 315 (472) T Consensus 228 ~~~~~---~~v~tyG~~~~ad~~a~ni~~~~~~~~F~V~~~g~~~~~~~l~~pG~HNvlNAlaaia~a~~~Gi~~~~i~~ 304 (459) T COG0773 228 SRGCW---SPVVTYGFDDEADWRAENIRQDGSGTTFDVLFRGEELGEVKLPLPGRHNVLNALAAIAVARELGIDPEAIAE 304 (459) T ss_pred HCCCC---CCEEEECCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHH T ss_conf 22258---737942478767289997687066427999986855679997267622688899999999984999899999 Q ss_pred HHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHH Q ss_conf 43114766443310100036531133100025653210125777874111026871388512354171058999999999 Q gi|254781101|r 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395 (472) Q Consensus 316 ~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~ 395 (472) T Consensus 305 aL~~F~GvkRR---fe~~g~~~~~~viDD-YaHHPtEI~aTL~aaR~~~~~-~~rIvaifQPH--rySRt~~~~~dF~~~ 377 (459) T COG0773 305 ALASFQGVKRR---FELKGEVNGVTVIDD-YAHHPTEIKATLAAARQKVPG-GKRIVAVFQPH--RYSRTRDLLDDFAKA 377 (459) T ss_pred HHHHCCCCCEE---EEEEEEECCEEEEEC-CCCCHHHHHHHHHHHHHHCCC-CCEEEEEECCC--CHHHHHHHHHHHHHH T ss_conf 99738896413---688646887899856-888979999999999976588-86699997787--317589999999988 Q ss_pred HHHCCCCEEEEEC-----CC-------HHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHH Q ss_conf 9864998999988-----03-------89899851137979997898999999998447898999977132548999999 Q gi|254781101|r 396 LSLYNISHVWLSG-----FH-------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 (472) Q Consensus 396 ~~~~~~d~v~~~G-----~~-------~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~~~~gdiVLiKGSr~~~le~iv~~ 463 (472) T Consensus 378 l--~~AD~v~l~~VY~A~e~~~~g~~~~~~l~~~i~~~~~~~-~~~~~~~~~~l~~~~~~gD~il~mGAGd--i~~~~~~ 452 (459) T COG0773 378 L--SDADEVILLDVYAAGEEPIEGDVSSEDLAEKIRQPGHVD-VPDLDDLVELLAKVAQPGDVILFMGAGD--IGKIARE 452 (459) T ss_pred H--HCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCC-CCCHHHHHHHHHHHCCCCCEEEEECCCC--HHHHHHH T ss_conf 8--519999996233357888767753999999851377014-7888899999996478999899966884--7889999 Q ss_pred HHHHC Q ss_conf 99850 Q gi|254781101|r 464 LLEEF 468 (472) Q Consensus 464 L~~~~ 468 (472) T Consensus 453 ~~~~l 457 (459) T COG0773 453 LLEAL 457 (459) T ss_pred HHHHH T ss_conf 99875 |
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>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=400.87 Aligned_cols=330 Identities=23% Similarity=0.271 Sum_probs=257.2 Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 06993999830365420123346777752011222122110145741000123221444301566443321121223232 Q gi|254781101|r 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 (472) Q Consensus 105 ~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P 184 (472) T Consensus 106 ~~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~gGN----iG~p~~~~-~~~~~~~~VlElSSfqL---~~-~~~~~p 176 (448) T PRK03803 106 AAKAPIVAITGSNAKSTVTTLVGEMAKAAGKRVAVGGN----LGTPALDL-LSDDVELYVLELSSFQL---ET-TDQLNA 176 (448) T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEE----CCCHHHHH-HCCCCCEEEEECCCCHH---HC-CCCCCC T ss_conf 17898899858998388999999999865983799403----27613665-25888789998664112---03-545686 Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 20255531210123444578888654331037622101210134246899875201233333222222222222234421 Q gi|254781101|r 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 (472) Q Consensus 185 ~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~ 264 (472) T Consensus 177 ~iaVitNI~~DHLD~h~s~e~Y~~aK~~If~~~~~---~v~n~Dd~~~~~l~~~~-----~~~~~f~~~~~-~~~~~~~~ 247 (448) T PRK03803 177 EVATVLNISEDHLDRHGGMLAYHQAKHRIFRGAKQ---VVVNRDDALTRPLVADG-----TPCWSFGLNAP-DFGAFGLR 247 (448) T ss_pred CEEEEECCCHHHHHHHCCHHHHHHHHHHHHCCCCE---EEEECCHHHHHHHHHCC-----CCEEEEECCCC-CCCCCCEE T ss_conf 28998358753654633899999998777538878---99958608888886548-----85799835776-51223169 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEE Q ss_conf 13465100124565432212222222233332210356765101210345543114766443310100036531133100 Q gi|254781101|r 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 (472) Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDD 344 (472) T Consensus 248 ~~~g~~~~~~~~~~~~~~~~l~l~G~HN~~NalAA~a~a~~~Gi~~e~I~~aL~~F~Gl~hR~E~v---~~~~Gv~fiND 324 (448) T PRK03803 248 EEDGEKYLAFGFERLLPVRELKIRGAHNQSNALAALALGEAAGLPMEAMLETLKEFKGLEHRCQWV---REVDGVRYYND 324 (448) T ss_pred ECCCEEEEECCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEE---EECCCEEEEEC T ss_conf 539839996165321433330767623599899999999982998789899886355712057999---96188899968 Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCCE Q ss_conf 02565321012577787411102687138851235417105899999999998649989999880389899851137979 Q gi|254781101|r 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 (472) Q Consensus 345 sYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~~~~~ 424 (472) T Consensus 325 SKaTN~~at~~Al~~~~~~---~~~~iilI~G-----G~~K~~d~~~l~~~~~~~-v~~v~l~G~~~~~i~~~l~~~~~~ 395 (448) T PRK03803 325 SKGTNVGATLAAIEGLGAD---IEGKLVLIAG-----GQGKGADFSELREPVAKY-CRAVVLIGRDAELIEQALGDAVPL 395 (448) T ss_pred CCCCCHHHHHHHHHHHHHH---CCCCEEEEEC-----CCCCCCCHHHHHHHHHHC-CEEEEEECCCHHHHHHHHCCCCCE T ss_conf 9989978999999964652---3686899937-----866666879999999736-609999795999999975068987 Q ss_pred EEECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHH Q ss_conf 99789899999999844789899997---71---------325489999999 Q gi|254781101|r 425 HYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLL 464 (472) Q Consensus 425 ~~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L 464 (472) T Consensus 396 ~~~~~l~~Av~~a~~~a~~gd~VLlSPa~aSfD~f~nyeeRG~~F~~~V~~L 447 (448) T PRK03803 396 VRAATLEEAVTQAAELAQPGDAVLLSPACASLDMFKNFEERGRQFAQAVEGL 447 (448) T ss_pred EECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 9949999999999985789898998974402013179999999999999975 |
|
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=402.16 Aligned_cols=324 Identities=23% Similarity=0.212 Sum_probs=252.3 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHC-CCCCCCHHHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 6993999830365420123346777752011222122110145741000-123221444301566443321121223232 Q gi|254781101|r 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 (472) Q Consensus 106 ~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll-~~~~~~~~~V~E~g~~~~gei~~L~~i~~P 184 (472) T Consensus 110 ~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GN----iG~p~~~~~~~~~~~d~~VlE~SSfq---l~~-~~~~~p 181 (450) T PRK02472 110 SEAPIIGITGSNGKTTTTTLIAEMLNAGGQHGLLAGN----IGYPASEVAQKATADDTLVTELSSFQ---LMG-VETFRP 181 (450) T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEE----CCCCCHHHHHCCCCCCEEEEEECCCC---HHH-HCCCCC T ss_conf 1597899827999731999999999974997399941----67641245544789877999906551---410-022588 Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CCCCCC Q ss_conf 2025553121012344457888865433103762210121013424689987520123333322222222222-223442 Q gi|254781101|r 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-FQLRKW 263 (472) Q Consensus 185 ~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad-~~~~~i 263 (472) T Consensus 182 ~iavitNI~~DHLD~h~s~e~Y~~aK~~i~~~~~~~~~~v~n~Dd~~~~~l~~~~~~----~~i~fs~~~~~~~~~~~~- 256 (450) T PRK02472 182 HIAVITNIFEAHLDYHGTFENYVAAKWNIQKNQTEDDYLVLNADQEEVKELAKQTKA----TVVPFSTTKEVDGAYIKD- 256 (450) T ss_pred CEEEEECCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCC----EEEEECCCCCCCCCEEEC- T ss_conf 689993688779766348999999999999559968779995887999999975797----089853675466517627- Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEE Q ss_conf 11346510012456543221222222223333221035676510121034554311476644331010003653113310 Q gi|254781101|r 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 (472) Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iID 343 (472) T Consensus 257 ----~--~~~~~~~~~~~~~~l~l~G~HN~~NalaAia~a~~lGi~~~~i~~aL~~F~Gl~hRlE~v---~~~~Gv~~iN 327 (450) T PRK02472 257 ----G--ALYFKGEKIMAADDIVLPGEHNLENILAAIAVAKLAGVSNEAIAEVLSTFTGVKHRLQYV---GTINGRKFYN 327 (450) T ss_pred ----C--EEEECCEEEEEHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEE---EEECCEEEEE T ss_conf ----8--799888456642323677553499999999999982998789999987448843379999---9974778982 Q ss_pred ECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCC-CC Q ss_conf 00256532101257778741110268713885123541710589999999999864998999988038989985113-79 Q gi|254781101|r 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SI 422 (472) Q Consensus 344 DsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~-~~ 422 (472) T Consensus 328 DSKaTN~~at~~Al~~~~-------~~iilI~GG-----~~Kg~d~~~l~~~~~--~vk~v~~~G~~~~~i~~~~~~~~~ 393 (450) T PRK02472 328 DSKATNILATQKALSGFN-------QPVILLAGG-----LDRGNEFDELIPYLK--NVKAMVVFGETAPKLARAANKAGI 393 (450) T ss_pred CCCCCCHHHHHHHHHCCC-------CCEEEEEEC-----CCCCCCHHHHHHHHH--CCCEEEEECCCHHHHHHHHHHCCC T ss_conf 688889999999984589-------987999915-----556888799999973--768999968899999999973797 Q ss_pred CEEEECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHHH Q ss_conf 7999789899999999844789899997---71---------3254899999999 Q gi|254781101|r 423 HVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLLL 465 (472) Q Consensus 423 ~~~~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L~ 465 (472) T Consensus 394 ~~~~~~~l~~Av~~a~~~a~~gd~VLlSPa~aSfD~f~nyeeRG~~F~~~V~~L~ 448 (450) T PRK02472 394 TIVEADNVEDAVPKAYALSEPGDVILLSPACASWDQYKTFEERGDEFIDAVHELK 448 (450) T ss_pred EEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCC T ss_conf 1898799999999999858895989979733050120599999999999999747 |
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>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=402.01 Aligned_cols=336 Identities=18% Similarity=0.242 Sum_probs=258.9 Q ss_pred HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCC Q ss_conf 99830699399983036542012334677775201122212211014574100012322144430156644332112122 Q gi|254781101|r 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 (472) Q Consensus 101 ~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~ 180 (472) T Consensus 97 ~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~GN----IG~p~--l~~~~~~d~~VlElSSfQ---l~-~~~ 166 (450) T PRK01368 97 LFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGN----IGVPA--LQAKASKDGYVLELSSFQ---LD-LVK 166 (450) T ss_pred HHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECC----CCHHH--HHCCCCCCEEEEEECCCC---HH-CCC T ss_conf 997667997799968999748999999999975996289625----56366--525268975999935652---20-363 Q ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 32322025553121012344457888865433103762210121013424689987520123333322222222222223 Q gi|254781101|r 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 (472) Q Consensus 181 i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~ 260 (472) T Consensus 167 ~~~p~iAVilNIs~DHLD~h~s~e~Y~~aK~~If~~~~~~~~~Vin~Dd~~~~~l~~~l~~~~~~~~i~f~~~~~~~~g- 245 (450) T PRK01368 167 TFTAKIAVLLNITPDHLDRHQDMNGYIAAKSKIFDRMDKDSYAVINIDNDYCREIFIKLQQEQRIKLIPFSVTKILENG- 245 (450) T ss_pred CCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCC- T ss_conf 4798789994688779877268789999999999658988889997874889999986300455169740345324477- Q ss_pred CCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCE Q ss_conf 4421134651001245-654322122222222333322103567651012103455431147664433101000365311 Q gi|254781101|r 261 RKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 (472) Q Consensus 261 ~~i~~~~~~~~~~~~~-~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~ 339 (472) T Consensus 246 --~~~~~~~~~~~~~~~~~~~~~~~~~L~G~HN~~NalAA~a~a~~lGi~~~~I~~aL~~F~glpHRlE~V---~~~~gv 320 (450) T PRK01368 246 --ISVVDDKILDNFFDDISFKLPFNKNLQGKHNCENIAASYAVAKIIGVEPKKILESISSFQSLPHRMQYI---GSINNI 320 (450) T ss_pred --EEEECCEEEEECCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHEEEEE---EEECCE T ss_conf --488547335520155330045211357565899999999999980997777787642467700146899---998999 Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCC Q ss_conf 33100025653210125777874111026871388512354171058999999999986499899998803898998511 Q gi|254781101|r 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 (472) Q Consensus 340 ~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~ 419 (472) T Consensus 321 ~~iNDSKaTN~~a~~~Al~~~~--------~i~lI~GG-----~~K~~d~~~l~~~~~--~v~~~~l~G~~~~~~~~~~~ 385 (450) T PRK01368 321 SFYNDSKATNAISAVQSIKALD--------NIYWLAGG-----IPKEGGIEEIKPYFS--KIKKAYFYGQAKEMFANTAK 385 (450) T ss_pred EEECCCCCCCHHHHHHHHHCCC--------CEEEEEEC-----CCCCCCHHHHHHHHH--CCCEEEEECCCHHHHHHHCC T ss_conf 9971788789999999985689--------73999941-----577788799998874--38799998978999998605 Q ss_pred CCCCEEEECCHHHHHHHHHHHCCCCCE----EEEE---CC---------CHHHHHHHHHHHHHH Q ss_conf 379799978989999999984478989----9997---71---------325489999999985 Q gi|254781101|r 420 RSIHVHYSETMDGLFLFIQSSLVDGDV----VVVK---SS---------NSCGFYRLINLLLEE 467 (472) Q Consensus 420 ~~~~~~~~~~~e~a~~~l~~~~~~gdi----VLiK---GS---------r~~~le~iv~~L~~~ 467 (472) T Consensus 386 ~~~~~~~~~~l~~av~~a~~~a~~~~~~~~~VLlSPacaSfD~f~nye~RG~~F~~lv~~L~~~ 449 (450) T PRK01368 386 NIVDFVICDNLEQAFDLAYKDAVGDNAEVKNILLAPSCSSYDQFKNFEERGELFIKLSSILILE 449 (450) T ss_pred CCCCEEECCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHC T ss_conf 8987696499999999999997557878997996860204013179999999999999998755 |
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>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=392.94 Aligned_cols=322 Identities=19% Similarity=0.255 Sum_probs=241.0 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC Q ss_conf 69939998303654201233467777520112221221101457410001232214443015664433211212232322 Q gi|254781101|r 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 (472) Q Consensus 106 ~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P~ 185 (472) T Consensus 112 ~~~~iIaVTGTnGKTTTtsli~~iL~~~g~~~~~gGN----IG~p~l~l~~~~~~~~~VlElSSfQ---l~~-~~~~~p~ 183 (457) T PRK01390 112 PDAPFIAITGTNGKSTTTALIAHLLRQAGRDVQMGGN----IGTAILSLEPPKAGRVYVVECSSYQ---IDL-TPSLDPT 183 (457) T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECC----CCHHHCCCCCCCCCCEEEEEECCCH---HHH-HHCCCCC T ss_conf 7898899928996498999999999973998699666----2401112346889966999925752---654-4006998 Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCCCC Q ss_conf 0255531210123444578888654331037622101210134246899875201233333222222222--22223442 Q gi|254781101|r 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN--ADFQLRKW 263 (472) Q Consensus 186 iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~--ad~~~~~i 263 (472) T Consensus 184 iavitNI~~DHLD~h~s~e~Y~~aK~~i~~~---~~~~Vin~DD~~~~~l~~~~~~~~~-~~~~~s~~~~~~~g~~~~~- 258 (457) T PRK01390 184 VGILLNLTPDHLDRHGTMEHYAAIKERLVAG---AGTAVIGVDDAYCQAIADRLERAGK-RVVRISVEKPLARGIYADG- 258 (457) T ss_pred EEEEECCCHHHHHHCCCHHHHHHHHHHHHCC---CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCCCCCCEEEEC- T ss_conf 8999178877865508999999999998557---9869996888889999999876388-4999716765668649857- Q ss_pred CCCCCCCCCCCCCCCCCC---CC--CCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCC Q ss_conf 113465100124565432---21--2222222233332210356765101210345543114766443310100036531 Q gi|254781101|r 264 KQCSEQSWMEVQLQGKSM---EV--VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338 (472) Q Consensus 264 ~~~~~~~~~~~~~~~~~~---~~--~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~ 338 (472) T Consensus 259 -----~~~~~~-~~~~~~~~~~~~~~~~L~G~HN~~NalAAia~a~~lGi~~e~i~~aL~~F~Gl~hR~E~V---~~~~G 329 (457) T PRK01390 259 -----GKLVRA-TGGARHEIADLAGIGSLRGRHNAQNAAAAVAACLALGVSPEEIQAGLRSFPGLAHRMEQV---GRRGK 329 (457) T ss_pred -----CEEEEC-CCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEE---EECCC T ss_conf -----889984-798345443143234577542699999999999981898999999997489999852797---54278 Q ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHC Q ss_conf 13310002565321012577787411102687138851235417105899999999998649989999880389899851 Q gi|254781101|r 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418 (472) Q Consensus 339 ~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~ 418 (472) T Consensus 330 v~~iNDSKaTN~~at~~Al~s~~--------~i~lI~GG~-----~K~~d~~~l~~~~~--~v~~~~liG~~~~~~~~~l 394 (457) T PRK01390 330 VLFVNDSKATNADAAAPALSSFP--------NIYWIAGGK-----PKAGGIESLAPFFP--RIAKAYLIGEAAEEFAATL 394 (457) T ss_pred CEEECCCCCCCHHHHHHHHHCCC--------CEEEEECCC-----CCCCCHHHHHHHHH--CCCEEEEECCCHHHHHHHH T ss_conf 33853776789899999997378--------859994504-----78889799999874--3359999898889999987 Q ss_pred CCCCCEEEECCHHHHHHHHHHHC----CCCCEEEEE---CC---------CHHHHHHHHHHH Q ss_conf 13797999789899999999844----789899997---71---------325489999999 Q gi|254781101|r 419 PRSIHVHYSETMDGLFLFIQSSL----VDGDVVVVK---SS---------NSCGFYRLINLL 464 (472) Q Consensus 419 ~~~~~~~~~~~~e~a~~~l~~~~----~~gdiVLiK---GS---------r~~~le~iv~~L 464 (472) T Consensus 395 ~~~~~~~~~~~l~~av~~a~~~a~~~~~~gd~VLlSPacaSfD~f~nyeeRG~~Fk~~V~~L 456 (457) T PRK01390 395 GGAVPYEISGTLEAAVAAAARDAAASGAPEPVVLLSPACASFDQFKNFEVRGDAFRELVQAL 456 (457) T ss_pred HCCCCEEECCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC T ss_conf 36798798598999999999999851899998997962404014269999999999999868 |
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>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=389.50 Aligned_cols=324 Identities=23% Similarity=0.284 Sum_probs=250.7 Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCC---CCCCCHHHHHCCCCCCCCCCCCCCC Q ss_conf 3069939998303654201233467777520112221221101457410001---2322144430156644332112122 Q gi|254781101|r 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR---MPVDVDFGIFELGMSHLGEIRFLTH 180 (472) Q Consensus 104 ~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~---~~~~~~~~V~E~g~~~~gei~~L~~ 180 (472) T Consensus 106 ~~~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~~GN----iG~p~~~~~~~~~~~~~d~~VlElSSfq---l~~-~~ 177 (445) T PRK04308 106 NRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGN----IGTPVLEAELQREGKKADVWVLELSSFQ---LEN-TE 177 (445) T ss_pred HCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE----CCCCCHHHHHHHCCCCCCEEEEEEECCC---CCC-CC T ss_conf 416995799948998377999999999975996299850----3752111144432787867999960334---466-55 Q ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 32322025553121012344457888865433103762210121013424689987520123333322222222222223 Q gi|254781101|r 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260 (472) Q Consensus 181 i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~ 260 (472) T Consensus 178 ~~~p~iavitNi~~DHLD~h~s~e~Y~~aK~~if~---~~~~~vln~dd~~~~~~~~~~-----~~v~~~~~~~~~d~~~ 249 (445) T PRK04308 178 SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFR---GDGVQVLNADDAFCRAMKRAG-----REVKWFSLEHEADFWL 249 (445) T ss_pred CCCCCEEEECCCCHHHHHHHCCHHHHHHHHHHHCC---CCCEEEECCCCHHHHHHHHCC-----CCEEEEECCCCCCEEE T ss_conf 43763899858985675453599999999997445---797799938719999998669-----9569981376563689 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEE Q ss_conf 44211346510012456543221222222223333221035676510121034554311476644331010003653113 Q gi|254781101|r 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 (472) Q Consensus 261 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~ 340 (472) T Consensus 250 ~~~-----~~~~~~~~~~l~~~~~l~l~G~HN~~NalAAia~a~~lGi~~~~I~~aL~~F~Gl~hR~E~v---~~~~GV~ 321 (445) T PRK04308 250 ERE-----TGRLKQGNEDLIATQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRVEKI---GEKNGVV 321 (445) T ss_pred ECC-----CCEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEE---EEECCEE T ss_conf 616-----63797468114543025667654798899999999982998899999987579999862899---8648988 Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCC Q ss_conf 31000256532101257778741110268713885123541710589999999999864998999988038989985113 Q gi|254781101|r 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 (472) Q Consensus 341 iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~ 420 (472) T Consensus 322 ~iNDSKaTn~~at~~Al~~~~-------~~i~lI~G-----G~~Kg~d~~~l~~~~~~~-~~~v~~~G~~~~~i~~~l~~ 388 (445) T PRK04308 322 FIDDSKGTNVGATAAAIAGLQ-------NPLFVILG-----GMGKGQDFTPLRDALAGK-AKGVFLIGVDAPQIRRDLDG 388 (445) T ss_pred EEECCCCCCHHHHHHHHHHCC-------CCEEEEEC-----CCCCCCCHHHHHHHHHHH-CEEEEEECCCHHHHHHHHHH T ss_conf 980798888899999998277-------97799976-----766777869999998752-56999989799999998863 Q ss_pred -CCCEEEECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHH Q ss_conf -797999789899999999844789899997---71---------325489999999 Q gi|254781101|r 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLL 464 (472) Q Consensus 421 -~~~~~~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L 464 (472) T Consensus 389 ~~~~~~~~~~l~~Av~~a~~~a~~g~~VLlSPa~aSfD~f~nye~RG~~F~~~v~~L 445 (445) T PRK04308 389 CGLNLTDCATLEEAVQTAYAQAEAGDIVLLSPACASFDMFKGYAHRSEVFIEAFKAL 445 (445) T ss_pred CCCCEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC T ss_conf 798558768799999999974889898998973404013079999999999999739 |
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>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=389.00 Aligned_cols=334 Identities=21% Similarity=0.211 Sum_probs=246.6 Q ss_pred HHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCC-----CCCCCHHHHHCCCCCCCCCC Q ss_conf 9983069939998303654201233467777520112221221101457410001-----23221444301566443321 Q gi|254781101|r 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-----MPVDVDFGIFELGMSHLGEI 175 (472) Q Consensus 101 ~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~-----~~~~~~~~V~E~g~~~~gei 175 (472) T Consensus 102 ~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GN----IG~p~~~~~l~~~~~~~~~d~~VlE~SSfQ---L 174 (459) T PRK02705 102 AWRALKHIPWVGITGTNGKTTVTHLLAHILQAAGLNAPMCGN----IGYAACELALLRSGKAEKPDWIVAELSSYQ---I 174 (459) T ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECC----CCCCHHHHHHHCCCCCCCCCEEEEECCHHH---H T ss_conf 999850497577717897278999999999983998536401----376204444213467887657999757133---1 Q ss_pred CCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC Q ss_conf 12122323220255531210123444578888654331037622101210134246899875201233333222222222 Q gi|254781101|r 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255 (472) Q Consensus 176 ~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ 255 (472) T Consensus 175 e~-~~~~~p~iavitNI~~DHLD~h~s~e~Y~~aK~~i~~---~~~~~V~N~DD~~l~~~~~~~~~----~~~~~~~~~~ 246 (459) T PRK02705 175 ES-SPELAPKIGIWTTFTPDHLERHGTLENYFAIKASLLE---RSEIRILNGDDPYLRQGRSSWPK----GYWVSTQGKK 246 (459) T ss_pred CC-CCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHC---CCCEEEEECCCHHHHHHHHHCCC----CEEEECCCCC T ss_conf 33-6677877899966887787664217789999997506---59889993887999998764377----4799655641 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECC Q ss_conf 2222344211346510012456543221-222222223333221035676510121034554311476644331010003 Q gi|254781101|r 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 (472) Q Consensus 256 ad~~~~~i~~~~~~~~~~~~~~~~~~~~-~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~ 334 (472) T Consensus 247 ~~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~l~G~HN~~NalAAia~a~~lGi~~e~I~~aL~~F~GlpHRlE~V---~ 321 (459) T PRK02705 247 SLLDQADFWIDQEG--WVVERGEPLFPLEALKMPGAHNLQNLLLAVAAARLAGLSAEAIAKALRSFPGVPHRLERI---G 321 (459) T ss_pred CCCCCCCEEECCCC--EEEECCEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEE---E T ss_conf 12111444882698--799778056540421687676899999999999985886366788875089999853898---7 Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHH Q ss_conf 65311331000256532101257778741110268713885123541710589999999999864998999988038989 Q gi|254781101|r 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 (472) Q Consensus 335 ~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~ 414 (472) T Consensus 322 ~~~gV~fiNDSKaTN~~a~~~Al~~~~-------~~iilI~GG-----~~K~~d~~~l~~~~~~-~v~~v~~~G~~~~~i 388 (459) T PRK02705 322 TINGIDFINDSKATNYDAAEVGLKAVP-------GPIILIAGG-----EAKQGDDSAWLKQIKA-KAAAVLLFGEAAPEL 388 (459) T ss_pred ECCCEEEECCCCCCCHHHHHHHHHHCC-------CCEEEEECC-----CCCCCCHHHHHHHHHH-CCEEEEEECCCHHHH T ss_conf 428878972787889899999998289-------986999567-----6667873999999864-061999989899999 Q ss_pred HHHCCCC---CCEEEECCHHHHHHHHHHHCCCCC--EEEEE---CC---------CHHHHHHHHHHHHHH Q ss_conf 9851137---979997898999999998447898--99997---71---------325489999999985 Q gi|254781101|r 415 KDALPRS---IHVHYSETMDGLFLFIQSSLVDGD--VVVVK---SS---------NSCGFYRLINLLLEE 467 (472) Q Consensus 415 ~~~~~~~---~~~~~~~~~e~a~~~l~~~~~~gd--iVLiK---GS---------r~~~le~iv~~L~~~ 467 (472) T Consensus 389 ~~~l~~~~~~~~~~~~~~l~~Av~~a~~~a~~~~~~~VLlSPacaSfD~f~nyeeRG~~F~~~V~~l~~~ 458 (459) T PRK02705 389 AQLLQESGYTGEIEIVETLDEAVNRAFELAKELQAKSVLLSPACASFDQYQNFEERGDHFRQLIQELLKV 458 (459) T ss_pred HHHHHHCCCCCCEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCC T ss_conf 9999736998776985999999999999876589998996874401013279999999999999998616 |
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>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=386.59 Aligned_cols=333 Identities=23% Similarity=0.279 Sum_probs=247.1 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCH-HCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 69939998303654201233467777520112221221101457410-00123221444301566443321121223232 Q gi|254781101|r 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 (472) Q Consensus 106 ~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvplt-ll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P 184 (472) T Consensus 120 ~~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~~GN----IG~p~l~~~~~~~~~d~~V~ElSSfq---L~~-~~~~~p 191 (481) T PRK01438 120 TPAPWLAVTGTNGKTTTVQMLASILRAAGLRAAAVGN----IGVPVLDAVRGPDGYDVLAVELSSFQ---LHW-APSVRP 191 (481) T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEE----CCHHHHHHHCCCCCCCEEEEECCCCC---CCC-CCCCCC T ss_conf 8887899938997460999999999966997079962----56777764228888608999804765---133-445576 Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCCC Q ss_conf 20255531210123444578888654331037622101210134246899875201233333222222222--2222344 Q gi|254781101|r 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN--ADFQLRK 262 (472) Q Consensus 185 ~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~--ad~~~~~ 262 (472) T Consensus 192 ~iavitNIs~DHLD~h~s~e~Y~~aK~~If~~~~~--~~v~n~dD~~~~~l~~~~~~~~~~~~i~f~~~~~~~~~~~~~~ 269 (481) T PRK01438 192 HSAAVLNLAPDHLDWHGSMEAYAADKGRVYEGNTV--ACVYNVADPATEDLVREADVVEGARAIGFTLGTPGPSDLGIVD 269 (481) T ss_pred CEEEEECCCHHHHHHHCCHHHHHHHHHHHHCCCCE--EEEEECCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEC T ss_conf 48997068777866523598999999998627851--4997057788999998602244770788735888712012103 Q ss_pred CCCCCCCCCCCCCC-CC-CCC-CCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCE Q ss_conf 21134651001245-65-432-2122222222333322103567651012103455431147664433101000365311 Q gi|254781101|r 263 WKQCSEQSWMEVQL-QG-KSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339 (472) Q Consensus 263 i~~~~~~~~~~~~~-~~-~~~-~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~ 339 (472) T Consensus 270 ~~~~~~-~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalAA~a~a~~lGi~~~~i~~aL~~F~Gl~hR~E~v---~~~~GV 345 (481) T PRK01438 270 GILVDR-AFVEDRFTSAQELATLSDVGPAAPHNVANALAAAALARAFGVSPAAVRDGLRAFRPDAHRIEHV---ADADGV 345 (481) T ss_pred CEEEEC-EEEEECCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEE---EEECCE T ss_conf 455302-0343023453000106640676576999999999999982998899998886348977337899---999999 Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCC Q ss_conf 33100025653210125777874111026871388512354171058999999999986499899998803898998511 Q gi|254781101|r 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 (472) Q Consensus 340 ~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~ 419 (472) T Consensus 346 ~fiNDSKaTN~~A~~~AL~~~~--------~i~lI~GG-----~~Kg~d~~~l~~~~~~-~vk~~~l~G~~~~~i~~~~~ 411 (481) T PRK01438 346 TYVDDSKATNPHAAEASLAAYP--------SVVWIAGG-----LAKGAHFDDLVRAHAA-RLRGVVLIGADRALIREALA 411 (481) T ss_pred EEECCCCCCCHHHHHHHHHHCC--------CEEEEECC-----CCCCCCHHHHHHHHHH-HCEEEEEECCCHHHHHHHHH T ss_conf 9980688789889999987249--------88999378-----6578898999999860-13399997789999999997 Q ss_pred CCC---CEE-----EECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHHHH Q ss_conf 379---799-----9789899999999844789899997---71---------32548999999998 Q gi|254781101|r 420 RSI---HVH-----YSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLLLE 466 (472) Q Consensus 420 ~~~---~~~-----~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L~~ 466 (472) T Consensus 412 ~~~~~~~~~~~~~~~~~~l~~av~~a~~~a~~gd~VLlSPacaSfD~f~nyeeRG~~Fk~~V~~l~g 478 (481) T PRK01438 412 RHAPDVPVVDVDRTDTEAMARAVRLAARLARPGDTVLLAPACASMDMFTNYAERGEAFAAAVRHLLG 478 (481) T ss_pred HCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCHHHHHHHHHHHHHHHHC T ss_conf 2289874577310237899999999996389989899895000202206999999999999997237 |
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>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=388.29 Aligned_cols=322 Identities=20% Similarity=0.242 Sum_probs=245.0 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCH-HCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 69939998303654201233467777520112221221101457410-00123221444301566443321121223232 Q gi|254781101|r 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 (472) Q Consensus 106 ~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvplt-ll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P 184 (472) T Consensus 115 ~~~~~IaVTGTnGKTTTtsmi~~iL~~~g~~~~~gGN----iG~p~~~~~~~~~~~d~~V~E~SS~q---l~~~-~-~~P 185 (458) T PRK01710 115 CPAKVFGITGSDGKTTTTTLIYEMLKEEGYKTWVGGN----IGTPLFSNIEEIKEEDKVVLELSSFQ---LMTM-D-VSP 185 (458) T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECC----CCCHHHHHHHHCCCCCEEEEEECHHH---HHHC-C-CCC T ss_conf 7587799936898478999999999984997585166----26446888850578866999932155---5305-4-688 Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC--CCCCCC Q ss_conf 202555312101234445788886543310376221012101342468998752012333332222222222--222344 Q gi|254781101|r 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA--DFQLRK 262 (472) Q Consensus 185 ~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~a--d~~~~~ 262 (472) T Consensus 186 ~iaVitNi~~DHLD~h~s~e~Y~~aK~~i~~~~~~~~~~i~n~Dd~~~~~~~~~~~~----~~~~f~~~~~~~~~~~~~~ 261 (458) T PRK01710 186 EVAVVTNLSPNHLDVHKDMEEYVDAKKNIFKYQSSNDLLVLNKDNEITNGMEKEAKG----DVVKFSRKEKLKEGAYYKD 261 (458) T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCC----CEEEECCCCCCCCCCEEEC T ss_conf 789983588536506541999999999999638877379993786999998776368----7899536654566736766 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEE Q ss_conf 21134651001245654322122222222333322103567651012103455431147664433101000365311331 Q gi|254781101|r 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 (472) Q Consensus 263 i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iI 342 (472) T Consensus 262 -----~--~~~~~~~~~~~~~~l~l~G~HN~~N~lAA~aa~~-~gi~~e~i~~aL~~F~Gl~hR~E~v---~~~~gv~~i 330 (458) T PRK01710 262 -----G--KLYIRGKEVCKKDDIKLKGMHNVENLLAAFCAVN-DDVSIESMKKVATTFTGVEHRCEFV---REINGVKYY 330 (458) T ss_pred -----C--EEEECCCEECCHHHCCCCCHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHCCCHHHHHEEE---EEECCEEEE T ss_conf -----8--8998784011324216776544999999999998-1999999999987543534231465---787476798 Q ss_pred EECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCC-- Q ss_conf 000256532101257778741110268713885123541710589999999999864998999988038989985113-- Q gi|254781101|r 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420 (472) Q Consensus 343 DDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~-- 420 (472) T Consensus 331 NDSkaTn~~s~~~AL~~~~-------~~iilI~GG-----~~K~~d~~~l~~~~~~-~~k~vi~~G~~~~~i~~~l~~~~ 397 (458) T PRK01710 331 NDSIASSPTRTLAGLNAFE-------KPVILIAGG-----YDKKIPFEPLAEEGYE-KIKILILMGDTKNKIKEAFKKVE 397 (458) T ss_pred ECCCCCCHHHHHHHHHCCC-------CCEEEEECC-----CCCCCCHHHHHHHHHH-HCCEEEEECCCHHHHHHHHHHHH T ss_conf 1576689899999997167-------772999646-----5667886999998763-05299997887799999998766 Q ss_pred -----CCCEEEECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHH Q ss_conf -----797999789899999999844789899997---71---------325489999999 Q gi|254781101|r 421 -----SIHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLL 464 (472) Q Consensus 421 -----~~~~~~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L 464 (472) T Consensus 398 ~~~~~~~~~~~~~~l~~Av~~a~~~a~~gd~VLlSPa~aSfD~f~nfeeRG~~F~~~V~~L 458 (458) T PRK01710 398 EEKGIKIPIVIVNSLEEAVKVAKNIAEKGDIITLSPACASFDMFPNFEIRGNKFKEIVNNL 458 (458) T ss_pred HHCCCCCCEEHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC T ss_conf 6316886523373599999999975889798998973311035269999999999999739 |
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>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=378.19 Aligned_cols=321 Identities=23% Similarity=0.325 Sum_probs=242.6 Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 06993999830365420123346777752011222122110145741000123221444301566443321121223232 Q gi|254781101|r 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 (472) Q Consensus 105 ~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P 184 (472) T Consensus 102 ~~~~~iIaVTGTnGKTTTt~li~~iL~~~g~~~~~gGN----iG~p~~~~-~~~~~d~~VlElSSfQ---Le~-~~~~~p 172 (438) T PRK03806 102 EAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGN----IGLPALML-LDQDCELYVLELSSFQ---LET-TSSLQA 172 (438) T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEC----CCCCHHHH-HCCCCCEEEEECCCCC---CCC-CCCCCC T ss_conf 27998899948998489999999999865997567715----77527775-1376757998324533---002-354576 Q ss_pred CEEEEEEECCCHHHHHH-HHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 20255531210123444-57888865433103762210121013424689987520123333322222222222223442 Q gi|254781101|r 185 HIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 (472) Q Consensus 185 ~iaiiTNI~~dHld~~~-s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i 263 (472) T Consensus 173 ~vavilNi~~DHLDr~~~s~e~Y~~aK~rI~~~~---~~~v~n~dD~~~~~~~~~~-----~~~i~fg~~~-~~~~~~~- 242 (438) T PRK03806 173 VAATILNVTEDHMDRYPFGLQQYRAAKLRIYENA---KVCVVNADDALTMPVRGAD-----ERCVSFGVNM-GDYHLNR- 242 (438) T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCC---CEEEECCCCHHHHHHHHCC-----CCEEEEECCC-CCEEEEE- T ss_conf 3788635888788776545999999999886279---6899947518779864035-----6558982356-6436760- Q ss_pred CCCCCCCCCCCCCCCCC-C-CCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEE Q ss_conf 11346510012456543-2-212222222233332210356765101210345543114766443310100036531133 Q gi|254781101|r 264 KQCSEQSWMEVQLQGKS-M-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 (472) Q Consensus 264 ~~~~~~~~~~~~~~~~~-~-~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~i 341 (472) T Consensus 243 --~~~~~~~~--~~~~~~~~~~~l~l~G~HN~~NalaA~a~a~~lGi~~e~i~~aL~sF~gl~HRlE~v---~~~~gv~f 315 (438) T PRK03806 243 --QQGETWLR--VKGEKVLNVKEMKLSGRHNYTNALAALALADAVGIPRASSLKALTTFTGLPHRFQLV---LEHNGVRW 315 (438) T ss_pred --CCCCEEEE--ECCEEEEECHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEE---EEECCEEE T ss_conf --57736897--378035401212666720498899999999983999899865520479999733899---99799999 Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCC Q ss_conf 10002565321012577787411102687138851235417105899999999998649989999880389899851137 Q gi|254781101|r 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 (472) Q Consensus 342 IDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~~ 421 (472) T Consensus 316 iNDSKaTN~~a~~~Al~s~~~-----~~~i~lI~GG~-----~K~~d~~~l~~~~~~~-~~~~~~~G~~~~~~~~~~~~~ 384 (438) T PRK03806 316 INDSKATNVGSTEAALNGLHV-----DGTLHLLLGGD-----GKSADFSPLARYLNGD-NIRLYCFGRDGAQLAALRPEV 384 (438) T ss_pred EECCCCCCHHHHHHHHHHCCC-----CCCEEEEECCC-----CCCCCHHHHHHHHHCC-CEEEEEECCCHHHHHHHCCCC T ss_conf 989721589999999982620-----39779995477-----5557879999986126-569999777889999641220 Q ss_pred CCEEEECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHH Q ss_conf 97999789899999999844789899997---71---------325489999999 Q gi|254781101|r 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLL 464 (472) Q Consensus 422 ~~~~~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L 464 (472) T Consensus 385 --~~~~~~l~~Av~~a~~~a~~gd~VLlSPacaSfD~f~nye~RG~~F~~lv~~L 437 (438) T PRK03806 385 --AQLTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGDEFARLAKEL 437 (438) T ss_pred --CHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC T ss_conf --41540099999999986689998998974503014249999999999999962 |
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>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=372.02 Aligned_cols=330 Identities=25% Similarity=0.264 Sum_probs=251.0 Q ss_pred HHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCH-HCCCCCCCHHHHHCCCCCCCCCCCCC Q ss_conf 99983069939998303654201233467777520112221221101457410-00123221444301566443321121 Q gi|254781101|r 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFL 178 (472) Q Consensus 100 ~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvplt-ll~~~~~~~~~V~E~g~~~~gei~~L 178 (472) T Consensus 102 L~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGN----IG~p~l~~~~~~~~~d~~VlElSSfQ---L~~- 173 (448) T COG0771 102 LFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGN----IGTPALELLEQAEPADVYVLELSSFQ---LET- 173 (448) T ss_pred HHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEECCC----CCCCHHHHHCCCCCCCEEEEECCCCC---CCC- T ss_conf 8987448999899979996288999999999855998321351----67137876201578987999924555---165- Q ss_pred CCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC-- Q ss_conf 223232202555312101234445788886543310376221012101342468998752012333332222222222-- Q gi|254781101|r 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-- 256 (472) Q Consensus 179 ~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~a-- 256 (472) T Consensus 174 ~~~~~P~iavilNi~~DHLD~H~s~e~Y~~aK~~i~~~~~~--~~Vin~dd~~~~~~~~~~---~~~~~~~fs~~~~~~~ 248 (448) T COG0771 174 TSSLRPEIAVILNISEDHLDRHGSMENYAAAKLRILEGQTE--VAVINADDAYLKTLADEA---TKARVIWFSFGEPLAD 248 (448) T ss_pred CCCCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHCCCCC--EEEEECCCHHHHHHHHHC---CCCEEEEEECCCCCCC T ss_conf 76678557999448877865606999999999999838962--799837727776544303---6632688974664556 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCC Q ss_conf 22234421134651001245654322122222222333322103567651012103455431147664433101000365 Q gi|254781101|r 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336 (472) Q Consensus 257 d~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~ 336 (472) T Consensus 249 ~~~~~~~~~~-------~~~~~i~~~~~l~l~G~hn~~N~lAa~a~a~~~gv~~e~i~~~L~~F~gl~HR~e~v---~~~ 318 (448) T COG0771 249 GDYIYDGKLV-------FKGEKLLPADELKLPGAHNLENALAALALARALGVPPEAILEALSSFTGLPHRLEFV---GEK 318 (448) T ss_pred CCEEECCHHC-------CCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEE---EEC T ss_conf 6334340110-------353000334215875452499899999999983999899999997389998622798---861 Q ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHH Q ss_conf 31133100025653210125777874111026871388512354171058999999999986499899998803898998 Q gi|254781101|r 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416 (472) Q Consensus 337 ~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~ 416 (472) T Consensus 319 ~gv~f~NDSKATN~~At~~AL~~~~-------~~v~lI~GG~-----~Kg~df~~L~~~~~~~-~~~~~~~G~~~~~i~~ 385 (448) T COG0771 319 DGVLFINDSKATNVDATLAALSGFD-------GPVILIAGGD-----DKGADFSPLAEILAKV-IKKLVLIGEDAEKIAA 385 (448) T ss_pred CCEEEECCCCCCCHHHHHHHHHCCC-------CCEEEEECCC-----CCCCCHHHHHHHHHHC-CEEEEEECCCHHHHHH T ss_conf 9889960787888889999997189-------9779997777-----8888816889977415-5599994788899999 Q ss_pred HCCCCCC-EEEECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHHH Q ss_conf 5113797-999789899999999844789899997---71---------3254899999999 Q gi|254781101|r 417 ALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLLL 465 (472) Q Consensus 417 ~~~~~~~-~~~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L~ 465 (472) T Consensus 386 ~l~~~~~~~~~~~~le~Av~~a~~~a~~gd~VLLSPacASfDqf~~feeRG~~F~~~v~~l~ 447 (448) T COG0771 386 ALKEAGPSLVICETLEEAVQLARELAQPGDVVLLSPACASFDQFKNFEERGEEFKELVSELG 447 (448) T ss_pred HHHHCCCCEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHCCHHHHHHHHHHHHHHHC T ss_conf 98752785361476999999999872589869976442164222379999999999999854 |
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>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=372.50 Aligned_cols=319 Identities=21% Similarity=0.234 Sum_probs=238.6 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC Q ss_conf 69939998303654201233467777520112221221101457410001232214443015664433211212232322 Q gi|254781101|r 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 (472) Q Consensus 106 ~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P~ 185 (472) T Consensus 106 ~~~~iIaVTGTnGKTTTtsli~~iL~~~g~~~~~gGN----iG~p~~~~-~~~~~d~~VlElSSfQL---e~-~~~~~p~ 176 (438) T PRK04663 106 VDKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGN----IGVPALDL-LEQDAELYVLELSSFQL---ET-TSSLKLK 176 (438) T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEE----CCCHHHHH-HHCCCCEEEEECCCCCH---HH-HCCCCCC T ss_conf 5897899948998289999999999828997068721----57168875-30469789984451014---34-0356863 Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 02555312101234445788886543310376221012101342468998752012333332222222222222344211 Q gi|254781101|r 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 (472) Q Consensus 186 iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~~ 265 (472) T Consensus 177 iavilNIs~DHLD~h~s~e~Y~~aK~rIf~~~---~~~Ivn~dd~~~~~--~~~----~~~~~~fg~~~~-~~~~~~--- 243 (438) T PRK04663 177 AAAFLNLSEDHMDRYQGMADYRQAKLRIFDHA---ELAVVNRDDKQTYP--DTA----SLQLVTFGFDQQ-EYGLIE--- 243 (438) T ss_pred CHHHHCCCHHHHHHHCCHHHHHHHHHHHHCCC---CEEEECCCHHHHHH--HHC----CCCEEEEECCCC-CCCEEE--- T ss_conf 33440688768777369999999999985369---78998653598887--760----785799604620-165597--- Q ss_pred CCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEE Q ss_conf 34651001245654-32212222222233332210356765101210345543114766443310100036531133100 Q gi|254781101|r 266 CSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 (472) Q Consensus 266 ~~~~~~~~~~~~~~-~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDD 344 (472) T Consensus 244 -~~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalaA~a~a~~lGi~~e~I~~aL~~F~glpHRlE~v---~~~~gv~~iND 319 (438) T PRK04663 244 -HQGREWLADNGQPVLASNELKLVGKHNVANSLVVLALLDAAGIDYRKTLDALKSYNGLTHRCQVV---ADNRGIKWVND 319 (438) T ss_pred -ECCEEEEEECCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEE---EEECCEEEECC T ss_conf -27869998588776631430566455687799999999983999789865653358988752899---99899999747 Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCCE Q ss_conf 02565321012577787411102687138851235417105899999999998649989999880389899851137979 Q gi|254781101|r 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424 (472) Q Consensus 345 sYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~~~~~ 424 (472) T Consensus 320 SKaTN~~a~~~Al~~~~~-----~~~i~lI~GG-----~~Kg~d~~~l~~~~~~~-~~~~~~~G~~~~~~~~~~---~~~ 385 (438) T PRK04663 320 SKATNVASTLAALSGLNL-----EGKLYLLVGG-----VGKGADFSELKPVLATL-NLQLCCFGEDGDQFMPLH---PSA 385 (438) T ss_pred CCCCCHHHHHHHHHHCCC-----CCCEEEEECC-----CCCCCCHHHHHHHHHHC-CEEEEEECCCHHHHHHHC---CCC T ss_conf 877887899999983677-----7847999657-----66666879999998523-769999888899997432---453 Q ss_pred EEECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHH Q ss_conf 99789899999999844789899997---71---------325489999999 Q gi|254781101|r 425 HYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLL 464 (472) Q Consensus 425 ~~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L 464 (472) T Consensus 386 ~~~~~l~~Av~~a~~~a~~gd~vLlSPacaSfD~F~nyeeRG~~F~~lv~~l 437 (438) T PRK04663 386 RRFETMEDAIESISPQLKSGDMVMLSPACASFDQFANFMARGDAFAELAKQY 437 (438) T ss_pred EECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 4406799999999986779998998974403003069999999999999974 |
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>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=371.98 Aligned_cols=323 Identities=19% Similarity=0.190 Sum_probs=236.0 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCE Q ss_conf 99399983036542012334677775201122212211014574100012322144430156644332112122323220 Q gi|254781101|r 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186 (472) Q Consensus 107 ~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P~i 186 (472) T Consensus 116 ~~~~IaVTGTnGKTTttsli~~iL~~~g~~~~~~GN----iG~p~~~-~~~~~~~~~V~ElSSfq---l~~-~~~~~p~i 186 (487) T PRK03369 116 PRRWLVVTGTNGKTTTTSMLHAMLRAAGRRSVLCGN----IGSPVLD-VLDEPAELLAVELSSFQ---LHW-APSLRPEA 186 (487) T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEC----CCHHHHH-HCCCCCCEEEEEECCCC---CCC-CCCCCCCE T ss_conf 665599979887278999999999858998599813----6657664-12478858999813654---344-66668547 Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCC--CCCCCCCCCCCC Q ss_conf 255531210123444578888654331037622101210134246899875201233333222222--222222234421 Q gi|254781101|r 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK--SKNADFQLRKWK 264 (472) Q Consensus 187 aiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~--~~~ad~~~~~i~ 264 (472) T Consensus 187 aVitNI~~DHLD~h~s~e~Y~~aK~ri~~----~~~~v~n~DD~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 259 (487) T PRK03369 187 GAVLNIAEDHLDWHGTMAAYAAAKARALT----GRVAVAGLDDSRAAALLDTAPAP---VRVGFRLGEPAAGELGVRDGH 259 (487) T ss_pred EEECCCCHHHHHHCCCHHHHHHHHHHHHC----CCEEEEECCCHHHHHHHHHCCCC---EEEEEECCCCCCCCEEEECCE T ss_conf 88527887787542899999999755733----98799968768899997427876---799653278764421265368 Q ss_pred CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEE Q ss_conf 134651001245654322-1222222223333221035676510121034554311476644331010003653113310 Q gi|254781101|r 265 QCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 (472) Q Consensus 265 ~~~~~~~~~~~~~~~~~~-~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iID 343 (472) T Consensus 260 ~~~~~----~~~~~~~~~~~~l~l~G~HNv~NalAA~a~a~~lGi~~~~i~~aL~~F~glphR~E~v---~~~~Gv~fiN 332 (487) T PRK03369 260 LVDRA----FADDLTLAPVDSIPVPGPVGVLDALAAAALARAVGVPAGAIADALASFRVGRHRAEVV---AVADGITYVD 332 (487) T ss_pred EEEEE----CCCCCEEEEHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEE---EEECCEEEEE T ss_conf 99841----3677367246645886353699899999999984999999999998579999852899---9999999982 Q ss_pred ECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCC Q ss_conf 00256532101257778741110268713885123541710589999999999864998999988038989985113797 Q gi|254781101|r 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 (472) Q Consensus 344 DsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~~~~ 423 (472) T Consensus 333 DSKaTn~~a~~~Al~s~~--------~iilI~GG~-----~Kg~~~~~L~~~~~~~-v~~v~l~G~d~~~i~~~l~~~~~ 398 (487) T PRK03369 333 DSKATNPHAARASILAYP--------RVVWIAGGL-----LKGASVDALVAEMASR-LVGAVLIGRDRAVVAEALSRHAP 398 (487) T ss_pred CCCCCCHHHHHHHHHHCC--------CEEEECCCC-----CCCCCHHHHHHHHHHH-EEEEEEECCCHHHHHHHHHHHCC T ss_conf 576689889999986155--------508961554-----3677707789999754-25999978888999999974277 Q ss_pred ---E---EE----------------------------ECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHH Q ss_conf ---9---99----------------------------789899999999844789899997---71---------32548 Q gi|254781101|r 424 ---V---HY----------------------------SETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGF 457 (472) Q Consensus 424 ---~---~~----------------------------~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~l 457 (472) T Consensus 399 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AV~~A~~~a~~GdvVLLSPacaSfD~f~nye~RG~~F 478 (487) T PRK03369 399 DVPVVEVVTGEDAGMPATPEACVLDVTKVDDAGGTLGDAVMTAAVAAARGLARPGDTVLLAPAGASFDQFTGYADRGDAF 478 (487) T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCHHHCHHCCCCHHHHHHHH T ss_conf 66521331132222100134544333321001120357799999999997489999899795553410307999999999 Q ss_pred HHHHHHHHH Q ss_conf 999999998 Q gi|254781101|r 458 YRLINLLLE 466 (472) Q Consensus 458 e~iv~~L~~ 466 (472) T Consensus 479 ~~~V~~l~~ 487 (487) T PRK03369 479 AAAVRAAIR 487 (487) T ss_pred HHHHHHHHC T ss_conf 999999759 |
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>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=369.81 Aligned_cols=326 Identities=20% Similarity=0.209 Sum_probs=239.0 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCH-HCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC Q ss_conf 9939998303654201233467777520112221221101457410-001232214443015664433211212232322 Q gi|254781101|r 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 (472) Q Consensus 107 ~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvplt-ll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P~ 185 (472) T Consensus 122 ~~~~IaVTGTnGKTTTtsli~~iL~~~g~~~~~~GN----IG~p~~~~l~~~~~~d~~VlElSSfQ---L~~-~~~~~p~ 193 (476) T PRK00141 122 PRTWLAVTGTNGKTTTTAMLAAMMQAGGFAAVAVGN----IGIPVSAALVAQNRIDVLVAELSSFQ---LHW-APTFTPD 193 (476) T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEE----CCCHHHHHHHCCCCCCEEEEECCCCH---HCC-CCCCCCC T ss_conf 776388968996798999999999837997289950----67246666525787758999778201---200-2236865 Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC--CCCCCC Q ss_conf 025553121012344457888865433103762210121013424689987520123333322222222222--223442 Q gi|254781101|r 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--FQLRKW 263 (472) Q Consensus 186 iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad--~~~~~i 263 (472) T Consensus 194 iaVilNIs~DHLD~h~s~e~Y~~aK~kI~~~----~~~vi~~Dd~~~~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~~ 266 (476) T PRK00141 194 AGVVLNLAEDHIDWHGSMRDYALDKARVLTA----PVAVIGADDPYVVELTREADL---SGLIGFTLGEPAEGQVGVRAG 266 (476) T ss_pred EEEEECCCHHHHHHHCCHHHHHHHHHHHHCC----CCEEEECCCHHHHHHHHHCCC---CCEEEECCCCCCCCCEEEECC T ss_conf 8987268878986626999999999987348----824997787899998874478---867985278755352447768 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEE Q ss_conf 11346510012456543221222222223333221035676510121034554311476644331010003653113310 Q gi|254781101|r 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 (472) Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iID 343 (472) T Consensus 267 ~~~~~~~~~~~~l---~~~~~l~~~G~HNl~NalAA~a~a~~lGi~~e~I~~aL~~F~gl~HR~E~---v~~~~gV~fiN 340 (476) T PRK00141 267 ELVDNAFGDNVVL---ASADGINPAGPAGVLDALAAAAVARSQGVAPEAIARALAGFEVAGHRGQV---VAEHDGVHFID 340 (476) T ss_pred EEEEEECCCCCEE---CCHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEE---EEEECCEEEEC T ss_conf 8998515775032---12432377653359999999999998499999999999856898861279---99989999981 Q ss_pred ECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCC-- Q ss_conf 002565321012577787411102687138851235417105899999999998649989999880389899851137-- Q gi|254781101|r 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 (472) Q Consensus 344 DsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~~-- 421 (472) T Consensus 341 DSKaTN~~at~~AL~~~~--------~iilI~GG-----~~Kg~d~~~l~~~~~~-~vk~v~l~G~~~~~i~~~l~~~~~ 406 (476) T PRK00141 341 NSKATNPHAADSALAGHE--------SVIWVAGG-----QLKGADIDELIATHGG-RIKAALVLGADRAEIVAAVKEHAP 406 (476) T ss_pred CCCCCCHHHHHHHHHHCC--------CCEEEECC-----CCCCCCHHHHHHHHHH-HCEEEEEECCCHHHHHHHHHHHCC T ss_conf 798999899999997288--------73999447-----6577787999999863-310999976898999999985478 Q ss_pred -CCEEEE------CCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHHHHH Q ss_conf -979997------89899999999844789899997---71---------325489999999985 Q gi|254781101|r 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLLLEE 467 (472) Q Consensus 422 -~~~~~~------~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L~~~ 467 (472) T Consensus 407 ~~~~~~~~~~~~~~~l~~av~~a~~~a~~gd~VLLSPacaSfD~f~nyeeRG~~F~~~V~~~~~~ 471 (476) T PRK00141 407 DAPVTVTDKTDPEEAMREAVAAAFSLAEPGDSVVLAPAAASLDMYTGMGQRGDLFAHYIIGTIKG 471 (476) T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHCCCCCHHHHHHHHHHHHHHHHCC T ss_conf 88268861545788999999999973889898998945430205179999999999999999713 |
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>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=369.19 Aligned_cols=325 Identities=19% Similarity=0.205 Sum_probs=239.1 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCH-HCCCCCCCHHHHHCCCCCCCCCCCCCC-CCCC Q ss_conf 69939998303654201233467777520112221221101457410-001232214443015664433211212-2323 Q gi|254781101|r 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLT-HLVR 183 (472) Q Consensus 106 ~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvplt-ll~~~~~~~~~V~E~g~~~~gei~~L~-~i~~ 183 (472) T Consensus 113 ~~~k~IaVTGTNGKTTTt~ll~~iL~~~g~~~~~~GN----IG~P~~~~~~~~~~~d~~VlElSSfQ---Le~~~~~~~~ 185 (468) T PRK04690 113 SVPGAVCVTGTKGKSTTTALLAHLLRAAGHRTALVGN----IGQPLLEVLAPQPAPAYWAIELSSYQ---TGDVGRSGAR 185 (468) T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECC----CCHHHHHHHCCCCCCCEEEEEECCCH---HHHHHHCCCC T ss_conf 6787899969985899999999999857998289867----76446765324788857999943205---7654531478 Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 22025553121012344457888865433103762210121013424689987520123333322222222222223442 Q gi|254781101|r 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 (472) Q Consensus 184 P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i 263 (472) T Consensus 186 p~iavilNispDHLDrHgs~e~Y~~aK~~If~~~~~~-~~vin~~D~~~~~~~~-----~~~~v~~~~~~~~--~~~~~~ 257 (468) T PRK04690 186 PELAVVLNLFPEHLDWHGGEARYVRDKLSLVTEGRPR-IALLNAADPRLAALQL-----PDSEVRWFNHPDG--WHVRGD 257 (468) T ss_pred CCEEEEECCCHHHHHHCCCHHHHHHHHHHHHHCCCCC-EEEEECCCHHHHHHHC-----CCCCEEEECCCCC--EEECCC T ss_conf 7787530488878746089999999999999657997-7999788889997525-----7784699517775--376066 Q ss_pred C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEE Q ss_conf 1-134651001245654322122222222333322103567651012103455431147664433101000365311331 Q gi|254781101|r 264 K-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 (472) Q Consensus 264 ~-~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iI 342 (472) T Consensus 258 ~~~~~~~~~~--------~~~~l~L~G~HN~~NalAA~a~a~~lGv~~~~I~~aL~sF~glpHRlE~v---~~~~gv~fi 326 (468) T PRK04690 258 VVYRGEQAIF--------DTANVPLPGRHNRGNLCAVLAALEALGLDAAALAPAAASFRPLPNRLQEL---GSVDGITYV 326 (468) T ss_pred EEEECCCCEE--------CCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEE---EEECCEEEE T ss_conf 7883562011--------11236777700487699999999983898899999874267999752799---998999997 Q ss_pred EECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCC-- Q ss_conf 000256532101257778741110268713885123541710589999999999864998999988038989985113-- Q gi|254781101|r 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420 (472) Q Consensus 343 DDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~-- 420 (472) T Consensus 327 NDSKATN~~a~~~AL~~f~~------~~iilI~GG-----~~Kg~d~~~l~~~~~~~~~~~vi~~G~~~~~i~~~~~~~~ 395 (468) T PRK04690 327 NDSISTTPHASLAALDCFAG------RRVALLVGG-----HDRGLDWTDFAAHMAQQAPLEIVTMGANGPRIHALLAPLA 395 (468) T ss_pred CCCCCCCHHHHHHHHHHCCC------CCEEEEECC-----CCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCC T ss_conf 37877898999999972766------857999736-----7667787999999863376899997478899999975234 Q ss_pred ---CCCEEEECCHHHHHHHHHHH-CCCCCEEEEE---CC---------CHHHHHHHHHHHHHH Q ss_conf ---79799978989999999984-4789899997---71---------325489999999985 Q gi|254781101|r 421 ---SIHVHYSETMDGLFLFIQSS-LVDGDVVVVK---SS---------NSCGFYRLINLLLEE 467 (472) Q Consensus 421 ---~~~~~~~~~~e~a~~~l~~~-~~~gdiVLiK---GS---------r~~~le~iv~~L~~~ 467 (472) T Consensus 396 ~~~~~~~~~~~~l~~Av~~a~~~~~~~gd~VLLSPacASfD~F~nyeeRG~~Fk~L~~~~~~~ 458 (468) T PRK04690 396 DAGRFGLHAADDLPHAMALARTALGAQGGVVLLSPGAPSFGAYRDYVARGRHFAQLAGFDPAA 458 (468) T ss_pred CCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCHHHCCCCCCCHHHHHHHHHHHHCCCHHH T ss_conf 456310254067999999999960589998997953115004179999999999987808777 |
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>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; InterPro: IPR005762 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=368.33 Aligned_cols=326 Identities=24% Similarity=0.277 Sum_probs=246.9 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCC-CHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC-- Q ss_conf 99399983036542012334677775201122212211014574-100012322144430156644332112122323-- Q gi|254781101|r 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR-- 183 (472) Q Consensus 107 ~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvp-ltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~-- 183 (472) T Consensus 109 ~~~~~aITGTnGKtTTT~L~~~~L~~~G~~a~~gGN----IG~p~L~~~~~-~~~~~~VlElSSFQ---L~~~~-~~~p~ 179 (476) T TIGR01087 109 PAKVVAITGTNGKTTTTSLLYHLLKAAGLKAVLGGN----IGTPALEVLDQ-EGAELYVLELSSFQ---LETTE-SLRPA 179 (476) T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECC----CCCHHHHHHCC-CCCCEEEEEECCHH---HCCCC-CCCCC T ss_conf 873799972686079999999999846997786257----88125553105-88966999700032---04575-55665 Q ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCC---CHHHHHHHHHCCCCCCCCCCCCCCCC---CCC Q ss_conf 220255531210123444578888654331037622101210134---24689987520123333322222222---222 Q gi|254781101|r 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHALGIKTIYSFGKSK---NAD 257 (472) Q Consensus 184 P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~D---d~~~~~l~~~~~~~~~~~i~~~g~~~---~ad 257 (472) T Consensus 180 p~i~~~lNi~~DHLD~h~~~~~Y~~aK~~i~~~~~~~d~~v~n~d~~~~~~~~~~~~~~~---~-~~~~~~~~~CP~~~~ 255 (476) T TIGR01087 180 PEIALILNISEDHLDWHGSFEDYVAAKLKIFARQTEGDVAVLNADQAYDPRFTRLEKKSK---A-QVVLFSVEKCPAEAE 255 (476) T ss_pred CEEEEEECCCHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCC---C-EEEEECCCCCCHHHH T ss_conf 124687066356301107988999998898525998767988120025504652124675---3-078740445808899 Q ss_pred CCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC----CHHHHHHHHCCCCCCC Q ss_conf 22344211346510012456--------54322122222222333322103567651012----1034554311476644 Q gi|254781101|r 258 FQLRKWKQCSEQSWMEVQLQ--------GKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD----VDTAIKALSVFHPKEG 325 (472) Q Consensus 258 ~~~~~i~~~~~~~~~~~~~~--------~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~----~~~i~~~L~~~~~~~G 325 (472) T Consensus 256 ~~l---~~~~~~~~l~~~~e~~~~C~~~~~~~~~~~~l~g~h~~~n~laa~ala~~~g~~~~~~~~~~~~~l~~F~~~~H 332 (476) T TIGR01087 256 QGL---EIRDGKEYLKPNDENDFACDDLTILPCEELKLLGLHNAENILAAIALAKSLGLNSDEELEAILEALRSFKGLPH 332 (476) T ss_pred HHH---HHCCCCEEECCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC T ss_conf 764---12388526336787630000112433215676788899999999999998288976016899999984579876 Q ss_pred CCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEE Q ss_conf 33101000365311331000256532101257778741110268713885123541710589999999999864998999 Q gi|254781101|r 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 (472) Q Consensus 326 R~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~ 405 (472) T Consensus 333 RlE~---~~~~~G~~f~NDSKATn~~At~~AL~~~~~-----~~~~~LI~GG~-----~KG~df~~L~~~~~~~-~~~~~ 398 (476) T TIGR01087 333 RLEY---VGQKNGVHFINDSKATNVHATLAALSALKN-----PKRVILIVGGD-----DKGADFSPLAPALKKK-VKAVL 398 (476) T ss_pred CEEE---EEECCCEEEEECCCCCCHHHHHHHHHHCCC-----CCEEEEEEECC-----CCCCCHHHHHHHHCCC-EEEEE T ss_conf 2688---777285479825621218999999984799-----97189996034-----6899848999984365-07999 Q ss_pred EECCCHHHHHHHCCCCCCEE------EECCHHHHHHHHHHHCCCC--CEEEE---ECC---------CHHHHHHHHH Q ss_conf 98803898998511379799------9789899999999844789--89999---771---------3254899999 Q gi|254781101|r 406 LSGFHVLALKDALPRSIHVH------YSETMDGLFLFIQSSLVDG--DVVVV---KSS---------NSCGFYRLIN 462 (472) Q Consensus 406 ~~G~~~~~~~~~~~~~~~~~------~~~~~e~a~~~l~~~~~~g--diVLi---KGS---------r~~~le~iv~ 462 (472) T Consensus 399 ~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~Av~~a~~~~~~g~~d~vLLSPacASFDqF~~y~eRGe~F~~~v~ 475 (476) T TIGR01087 399 AIGEDAAKIAKLLKEIGLVVKYGEETLVESLEEAVQAAREVAKEGNADVVLLSPACASFDQFKSYEERGEKFKELVR 475 (476) T ss_pred EECCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHCCHHHHHHHHHHHHH T ss_conf 85354789999863427643546530577899999999997127997679888641217773038888899999981 |
The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD). MurD catalyses the addition of d-glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-l-alanine. ; GO: 0005524 ATP binding, 0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm. |
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=338.16 Aligned_cols=301 Identities=18% Similarity=0.200 Sum_probs=225.1 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC Q ss_conf 69939998303654201233467777520112221221101457410001232214443015664433211212232322 Q gi|254781101|r 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 (472) Q Consensus 106 ~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P~ 185 (472) T Consensus 100 ~~~~~IaITGTNGKTTTt~ll~~iL~~~g~~~~~~GN----IG~p~--l~~~~~~~~~VlElSSfQL---~~-~~~~~p~ 169 (418) T PRK00683 100 QRYPSLGITGSTGKTTTILFLEHLLRTLGIPAFAMGN----IGLPI--LDGMQQPGVRVVEISSFQL---AD-QEESIPV 169 (418) T ss_pred CCCCEEEEECCCCCEEHHHHHHHHHHHCCCCCEEEEC----CCHHH--HHHHCCCCCEEEEEEHHHH---HH-HHHCCCC T ss_conf 4798799976898660999999999867998188803----46577--7643258946998312423---21-2430776 Q ss_pred E--EEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 0--25553121012344457888865433103762210121013424689987520123333322222222222223442 Q gi|254781101|r 186 I--AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 (472) Q Consensus 186 i--aiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i 263 (472) T Consensus 170 ~~~avilNis~DHLD~H~s~e~Y~~aK~~I~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~------ 229 (418) T PRK00683 170 LSGGMILNISDNHLDYHGNLDAYFQAKQNIAKCLRNPDDLWVGDERSLGNSYLEYV--------------QEIM------ 229 (418) T ss_pred CCHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHH--------------HHHH------ T ss_conf 22121015784241221689999999999998467976468525411017888877--------------7777------ Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH-HCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEE Q ss_conf 113465100124565432212222222233332210356765-1012103455431147664433101000365311331 Q gi|254781101|r 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI-LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342 (472) Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~-lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iI 342 (472) T Consensus 230 ~~~~~-------------~~~l~~~~~hn~~N~~aA~a~a~~~~~i~~~~i~~al~~F~glpHR~E~v---~~~~Gv~fi 293 (418) T PRK00683 230 RLLDK-------------GSALKPLYLHDRYNYCAAYALANEVFPISPESFLEAVATFEKPPHRMEYL---GEKDGVHYI 293 (418) T ss_pred HHHCC-------------CCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEE---EEECCCEEE T ss_conf 77445-------------31016544032988999999999857999999999997348841113688---881782376 Q ss_pred EECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCC Q ss_conf 00025653210125777874111026871388512354171058999999999986499899998803898998511379 Q gi|254781101|r 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422 (472) Q Consensus 343 DDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~~~ 422 (472) T Consensus 294 NDSKaTN~~a~~~AL~s~~~-------~iilI~GG-----~~K~~d~~~L~~~~~~~-vk~v~~~G~~~~~i~~~l~~~~ 360 (418) T PRK00683 294 NDSKATTVSAVEKALLAVGK-------DVIVILGG-----RNKGGDFPSLLPVLRQT-AKHVVAMGECRQEIAQALSEKF 360 (418) T ss_pred CCCCCCCHHHHHHHHHHCCC-------CCEEEECC-----CCCCCCHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHCCC T ss_conf 37767898999999985678-------85899757-----87667869999998631-8499996889999999875699 Q ss_pred CEEEECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHHH Q ss_conf 7999789899999999844789899997---71---------3254899999999 Q gi|254781101|r 423 HVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLLL 465 (472) Q Consensus 423 ~~~~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L~ 465 (472) T Consensus 361 ~~~~~~~l~eAv~~a~~~a~~gd~VLLSPacaSfD~F~nyeeRG~~Fk~lV~~l~ 415 (418) T PRK00683 361 PLTVVKDLQEAVSCAQEIAQPGDVILLSPGCASFDQFRSFEERGAYFKQLVGEME 415 (418) T ss_pred CEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 8798598999999999847898989989755010021599999999999999732 |
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>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=7e-45 Score=316.23 Aligned_cols=311 Identities=17% Similarity=0.182 Sum_probs=219.4 Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCC Q ss_conf 99999999830699399983036542012334677775201122212211014574100012322144430156644332 Q gi|254781101|r 95 LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174 (472) Q Consensus 95 l~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~ge 174 (472) T Consensus 78 ~seiel~~~--~~~~~I~ITGTNGKsTtt~li~~iL~~~g~--~~~GN----IG~Pl--~~~~~~~~~~VlElSSfQ--- 144 (401) T PRK03815 78 ISEYDYFYS--FMPFSIWISGTNGKTTTTQMLTHLLEDFGA--VSGGN----IGTPL--AELDPNAKIWVLETSSFT--- 144 (401) T ss_pred HHHHHHHHH--CCCCCEEEECCCCHHHHHHHHHHHHHHCCC--CEECC----CCHHH--HHCCCCCCEEEEEECHHH--- T ss_conf 149999985--278748998477778999999999986698--13041----66438--862877887999934454--- Q ss_pred CCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCC Q ss_conf 11212232322025553121012344457888865433103762210121013424689987520123333322222222 Q gi|254781101|r 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254 (472) Q Consensus 175 i~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~ 254 (472) T Consensus 145 Le~-~~~~~p~iavilNis~DHLDrH~s~e~Y~~aK~~I~~~~~~~~~~i~~~~~~~~~---------~~~~~i~~~~~~ 214 (401) T PRK03815 145 LHY-TNKAKPNIYLLLPITPDHLSWHGSFENYEKAKLKPLKLMNEGSVAILPKKYKETP---------TKAQKISYEDEE 214 (401) T ss_pred CCC-CCCCCCCEEEEECCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECHHHCCCC---------CCCEEEEECCHH T ss_conf 066-7566876898836882052362689999999999996288776799722330476---------661799726627 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECC Q ss_conf 22222344211346510012456543221222222223333221035676510121034554311476644331010003 Q gi|254781101|r 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 (472) Q Consensus 255 ~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~ 334 (472) T Consensus 215 ~--~~----------~~~~i--~~----~~i~~~~~~~~~~~-~a~--~~~~~~~~~~~~~~l~~F~gl~HRlE~v---~ 270 (401) T PRK03815 215 D--LA----------EKFGI--DT----EKINFKGPFLLDAL-LAL--AVEKILFDENDYERLNAFVIEAHKLEEF---R 270 (401) T ss_pred H--HH----------HHCCC--CH----HHCCCCHHHHHHHH-HHH--HHHHCCCCHHHHHHHHHCCCCCCCEEEE---E T ss_conf 7--78----------76588--77----87056458999999-999--9985566355899998489988853899---9 Q ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHH Q ss_conf 65311331000256532101257778741110268713885123541710589999999999864998999988038989 Q gi|254781101|r 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414 (472) Q Consensus 335 ~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~ 414 (472) T Consensus 271 ~~~gv~fiNDSKATN~~At~~Al~~~~~------~~iilI~GG-----~~Kg~d~~~L~~~i~~~-~~~v~~~G~~~~~i 338 (401) T PRK03815 271 DKQGRLWVDDSKATNIDATIQALKRYKD------KKIHLILGG-----DDKGVDLTPLFEELKNF-DIEIYAIGSNAEKI 338 (401) T ss_pred EECCEEEECCCCCCCHHHHHHHHHHCCC------CCEEEEECC-----CCCCCCHHHHHHHHHHH-CEEEEEECCCHHHH T ss_conf 8489899668878988999999983767------867999637-----65567879999997640-56999987899999 Q ss_pred HHHCCC-CCCEEEECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHH Q ss_conf 985113-797999789899999999844789899997---71---------325489999999 Q gi|254781101|r 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLL 464 (472) Q Consensus 415 ~~~~~~-~~~~~~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L 464 (472) T Consensus 339 ~~~~~~~~~~~~~~~~l~eAv~~a~~~a~~gdvVLLSPacASfD~FknyeeRG~~Fk~~V~~L 401 (401) T PRK03815 339 LALAKEFNIKAQKCEFLEKAVNEIKKVLKQNEVALLSPAAASLDQFSSYAERGEKFKEFVLKL 401 (401) T ss_pred HHHHHHCCCCEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC T ss_conf 999875698469828699999999985789798998974403002069999999999999739 |
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>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism] | Back alignment and domain information |
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Probab=100.00 E-value=4.1e-35 Score=251.59 Aligned_cols=331 Identities=21% Similarity=0.296 Sum_probs=223.4 Q ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC---CCCH--HHHHCCC---CCCCH----------------------- Q ss_conf 306993999830365420123346777752011---2221--2211014---57410----------------------- Q gi|254781101|r 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKT---YACI--GSYNNHI---GVPLT----------------------- 152 (472) Q Consensus 104 ~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~---~~t~--gn~Nn~i---Gvplt----------------------- 152 (472) T Consensus 40 P~~~~~vIhVaGTNGKGSt~afl~siL~~aG~~VG~yTSPHL~~~~ERI~ing~~Isd~~~~~~~~~ve~~~~~~~~~~~ 119 (427) T COG0285 40 PQKSPPVIHVAGTNGKGSTCAFLESILREAGYKVGVYTSPHLLSFNERIRINGEPISDEELAAAFERVEEAAGSLDLISL 119 (427) T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCEEEEECCEECCHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 72149869993789842499999999997598714678876076421799999988899999999999997523666787 Q ss_pred -HCC----------CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHH-HHHHHHHHHHHHCCCCCCC Q ss_conf -001----------2322144430156644332112122323220255531210123444-5788886543310376221 Q gi|254781101|r 153 -LAR----------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220 (472) Q Consensus 153 -ll~----------~~~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~-s~e~i~~~K~~i~~~l~~~ 220 (472) T Consensus 120 T~FE~~Ta~Af~~F~~~~vD~aIlEVGLG--GRlDA-TNVi~p~vsvIT~I~lDH~~~LG~tie~IA~EKAGI~k~g~P- 195 (427) T COG0285 120 TYFEVLTAMAFLYFAEAKVDVAILEVGLG--GRLDA-TNVIEPDVSVITSIGLDHTAFLGDTLESIAREKAGIIKAGKP- 195 (427) T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEECCCC--CCCCC-HHCCCCCEEEECCCCHHHHHHHCCCHHHHHHHHHCCCCCCCC- T ss_conf 47999999999999768999899960556--66443-221687668976647257888686699999986401257995- Q ss_pred CHHHHCC-CCH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC Q ss_conf 0121013-424-6899875201233333222222222222234421134651001245654322122222222-333322 Q gi|254781101|r 221 GTIFLNY-DDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH-MAQNML 297 (472) Q Consensus 221 g~~ViN~-Dd~-~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~h-nv~Nal 297 (472) T Consensus 196 --~v~~~~~~p~a~~vi~~~a~~~~~~-~~~~~~----~~~~~~-----~~~~~~~~~~~~~~~~~lp~l~~~~Q~~NAa 263 (427) T COG0285 196 --AVIGEQQPPEALNVIAERAEELGAP-LFVLGP----DFQVLE-----EGNGFSFQGGGGLLDLPLPLLGGHHQIENAA 263 (427) T ss_pred --EEECCCCCHHHHHHHHHHHHHCCCC-EEECCC----CHHHCC-----CCCEEEEECCCEEEEECCCCCCCCHHHHHHH T ss_conf --7988889878999999998751897-465173----322104-----6526887337704554166566305788899 Q ss_pred CHHHHHHHHCC--CCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 10356765101--2103455431147664433101000365311331000256532101257778741110268713885 Q gi|254781101|r 298 MTLGIVSILTA--DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375 (472) Q Consensus 298 aAia~~~~lGi--~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~Vl 375 (472) T Consensus 264 ~Ai~al~~l~~~i~~~~i~~gl~~~~-wpGR~e~l~~----~p~i~lDgA--HNp~aa~~La~~l~~~~~~~~-~~~~v~ 335 (427) T COG0285 264 LAIAALEALGKEISEEAIRKGLANVD-WPGRLERLSE----NPLILLDGA--HNPHAARALAETLKTLFNDRP-RLTLVF 335 (427) T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCC-CCCEEEEECC----CCEEEEECC--CCHHHHHHHHHHHHHHHCCCC-CEEEEE T ss_conf 99999998314288999999998676-8733788337----974999888--999999999999997733577-528999 Q ss_pred CCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECC------CHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEE Q ss_conf 1235417105899999999998649989999880------3898998511379799978989999999984478989999 Q gi|254781101|r 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449 (472) Q Consensus 376 G~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~------~~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~~~~gdiVLi 449 (472) T Consensus 336 g~l------~dKd~~~~l~~L~~~-~~~~~~~~~~~~ra~~~~~l~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~ilV 407 (427) T COG0285 336 GML------KDKDIAGMLAALLPI-VDEIYTTPLPWPRALDAEELLAFAGERGGVE-LDDVAEALELALEKADEDDLVLV 407 (427) T ss_pred EEE------CCCCHHHHHHHHHCC-CCEEEECCCCCCCCCCHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHCCCCCEEEE T ss_conf 832------588889999974064-7689982589735489999999987635785-00399999999971579974999 Q ss_pred ECCCHHHHHHHHHHHHHH Q ss_conf 771325489999999985 Q gi|254781101|r 450 KSSNSCGFYRLINLLLEE 467 (472) Q Consensus 450 KGSr~~~le~iv~~L~~~ 467 (472) T Consensus 408 ~GSly~-~~ev~~~~~~~ 424 (427) T COG0285 408 TGSLYL-AGEVLELLKKR 424 (427) T ss_pred EECHHH-HHHHHHHHHCC T ss_conf 823999-99999996335 |
|
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=3.5e-35 Score=251.99 Aligned_cols=323 Identities=18% Similarity=0.173 Sum_probs=208.5 Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCC---CH--HHHHCCC---CCC----------- Q ss_conf 9899999999999830699399983036542012334677775201122---21--2211014---574----------- Q gi|254781101|r 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA---CI--GSYNNHI---GVP----------- 150 (472) Q Consensus 90 d~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~---t~--gn~Nn~i---Gvp----------- 150 (472) T Consensus 34 ri~~ll~~lg~---p~~~~~~IhVaGTNGKGSt~~~l~~il~~~G~~vG~ftSPHl~~~~ERi~ing~~Is~~~~~~~~~ 110 (416) T PRK10846 34 RVSQVAARLDV---LKPAPFVFTVAGTNGKGTTCRTLESILMAAGYRVGVYSSPHLVRYTERVRVQGQELPESAHTASFA 110 (416) T ss_pred HHHHHHHHCCC---CCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEECCCCCCCEEEEEEECCCCCCHHHHHHHHH T ss_conf 99999997299---865799899968855799999999999987997307788867951015679991289899999999 Q ss_pred ----------CHHCC----------CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHH-HHHHHHHH Q ss_conf ----------10001----------2322144430156644332112122323220255531210123444-57888865 Q gi|254781101|r 151 ----------LTLAR----------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASA 209 (472) Q Consensus 151 ----------ltll~----------~~~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~-s~e~i~~~ 209 (472) T Consensus 111 ~v~~~~~~~~lT~FE~~T~~A~~~F~~~~vD~aVlEvGLGG--rlDA-TNvi~~~vsvIT~IglDH~~~LG~Tle~IA~E 187 (416) T PRK10846 111 EIEAARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGG--RLDA-TNIVDADVAVITSIALDHTDWLGPDRESIGRE 187 (416) T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCE--EEHH-HCCCCCCEEEECCCCHHHHHHHCCCHHHHHHH T ss_conf 98875068887699999999999998569998999835751--3432-13888877998870476420017999999998 Q ss_pred HHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 43310376221012101342468998752012333332222222222222344211346510012456543221222222 Q gi|254781101|r 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 (472) Q Consensus 210 K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G 289 (472) T Consensus 188 KAGIik---~g~pvV~g-~~~~~~~i~~~a~~~~a-~l~~~~~----d~~~-----~~~~~~~~~~~~~~~~-~~l~l-~ 251 (416) T PRK10846 188 KAGIFR---SEKPAVVG-EPEMPSTIADVAQEKGA-LLQRRGV----DWNY-----SVTDHDWAFSDGDGTL-ENLPL-P 251 (416) T ss_pred HHHHHC---CCCEEEEC-CCCHHHHHHHHHHHCCC-CEEECCC----CEEE-----EECCCEEEEECCCCCC-CCCCC-C T ss_conf 753422---79808985-85378999999997099-7798178----4079-----8538737997588625-24888-6 Q ss_pred CCCCCCCCCHHHHHHHHC--CCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCC Q ss_conf 223333221035676510--121034554311476644331010003653113310002565321012577787411102 Q gi|254781101|r 290 YHMAQNMLMTLGIVSILT--ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 (472) Q Consensus 290 ~hnv~NalaAia~~~~lG--i~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~ 367 (472) T Consensus 252 ~~~~~Naa~Al~al~~~~~~i~~~~i~~gL~~~~-wpGR~e~i~----~~p~iiLDgA--HN~~aa~~L~~~l~~~~~-- 322 (416) T PRK10846 252 NVPQPNAATALAALRASGLEVSENAIRDGIASAI-LPGRFQIVS----ESPRVIFDVA--HNPHAAEYLTGRLKALPK-- 322 (416) T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC-CCCCEEEEC----CCCCEEEECC--CCHHHHHHHHHHHHHCCC-- T ss_conf 5799999999999997399999999999998577-787512414----7985777778--599999999999996077-- Q ss_pred CCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECC------CHHHHHHHCCCCCCEEEECCHHHHHHHHHHHC Q ss_conf 687138851235417105899999999998649989999880------38989985113797999789899999999844 Q gi|254781101|r 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF------HVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441 (472) Q Consensus 368 ~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~------~~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~~ 441 (472) T Consensus 323 ~~k~~~V~g~l------~dKD~~~~l~~L~~~-~d~~~~~~~~~~Ra~~~~~L~~~l~~---~~~~~~~~~A~~~al~~a 392 (416) T PRK10846 323 NGRVLAVIGML------HDKDIAGTLAWLKSV-VDDWYCAPLEGPRGATAEQLLEHLGN---GKSFDSVAQAWDAAMADA 392 (416) T ss_pred CCCEEEEEECC------CCCCHHHHHHHHHHH-CCEEEEECCCCCCCCCHHHHHHHHHC---CCCCCCHHHHHHHHHHHC T ss_conf 99689998413------789999999986644-68999958999777999999998602---766699999999999847 Q ss_pred CCCCEEEEECCC Q ss_conf 789899997713 Q gi|254781101|r 442 VDGDVVVVKSSN 453 (472) Q Consensus 442 ~~gdiVLiKGSr 453 (472) T Consensus 393 ~~~d~IlV~GSl 404 (416) T PRK10846 393 KPEDTVLVCGSF 404 (416) T ss_pred CCCCEEEEECHH T ss_conf 999859997139 |
|
>TIGR01499 folC FolC bifunctional protein; InterPro: IPR001645 Folylpolyglutamate synthase 6 | Back alignment and domain information |
---|
Probab=100.00 E-value=1.2e-33 Score=241.81 Aligned_cols=350 Identities=20% Similarity=0.251 Sum_probs=223.2 Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH-HHHHCCC---CCH--HHHHCCC---CCCCH--------- Q ss_conf 8999999999998306993999830365420123346777-7520112---221--2211014---57410--------- Q gi|254781101|r 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL-SSIKKTY---ACI--GSYNNHI---GVPLT--------- 152 (472) Q Consensus 91 ~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL-~~~~~~~---~t~--gn~Nn~i---Gvplt--------- 152 (472) T Consensus 4 ~~~ll~~LG~P~~~~~a~~~IHVaGTNGKGST~a~l~~iL~~~~G~~VG~fTSPHl~~f~ERI~~nG~~i~d~~~~~~~~ 83 (460) T TIGR01499 4 MKKLLEALGNPHQDLNALPVIHVAGTNGKGSTCAFLESILREAAGYKVGLFTSPHLVSFNERIRVNGEPISDEELAQAFE 83 (460) T ss_pred HHHHHHHCCCCHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEEEEEECCEECCHHHHHHHHH T ss_conf 88999970887379248977999720687589999999988753977888873738742234789885768899999999 Q ss_pred -------------------------HCC----CC-CCCHHHHHCCCCCCCCCCCCCCCCCC-CCEEEEEEECCCHHHHHH Q ss_conf -------------------------001----23-22144430156644332112122323-220255531210123444 Q gi|254781101|r 153 -------------------------LAR----MP-VDVDFGIFELGMSHLGEIRFLTHLVR-PHIAVITTIAPAHLSNFS 201 (472) Q Consensus 153 -------------------------ll~----~~-~~~~~~V~E~g~~~~gei~~L~~i~~-P~iaiiTNI~~dHld~~~ 201 (472) T Consensus 84 ~~~~~~~~~~~~~~~~~~t~FE~~T~~Af~~F~~~~~vd~av~EVGlG--GrlDa-TNv~~~p~~~~iT~ig~DH~~~LG 160 (460) T TIGR01499 84 QVRPILKKLSQETEYSQPTFFELLTLLAFLYFAQLAQVDVAVLEVGLG--GRLDA-TNVVEKPLVSVITSIGLDHTEILG 160 (460) T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC--CCCCC-CCCCCCCEEEEECCCCHHHHHHHC T ss_conf 999987533101358777789999999999999850882899987376--54455-441138637997277768886505 Q ss_pred -HHHHHHHHHHHHCCCCCCCCHHHHCC-CC-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf -57888865433103762210121013-42-4689987520123333322222222222223442113465100124565 Q gi|254781101|r 202 -GIEEIASAKAEIFEGLEKTGTIFLNY-DD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278 (472) Q Consensus 202 -s~e~i~~~K~~i~~~l~~~g~~ViN~-Dd-~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~~~~~~~~~~~~~~~ 278 (472) T Consensus 161 ~t~~~IA~eKAGI~k~g~P---~v~~~~~~~ea~~v~~~~A~~~~~~~l~~~~~----~~~~~~~~~~~~g~~~~~~~~~ 233 (460) T TIGR01499 161 DTLEEIAWEKAGIIKEGVP---IVTGEVQEPEALEVLKKKAEEKGAAPLQVVGK----DFDIKEKDENLNGEKFSFSGEN 233 (460) T ss_pred CCHHHHHHHHHHHHCCCCC---EEEECCCCHHHHHHHHHHHHHHCCCEEEEECC----CCCCCCCCCCCCCCEEEECCCC T ss_conf 3379999974576216765---68714886689999999999716860465034----1322111122465212223555 Q ss_pred C-CCCC--CCCCCCCCCCCCCCCHHHHHHHHC------CCCHHHH-HHHHCCCCCCCCCCCCEECCCC---CCEEEEEEC Q ss_conf 4-3221--222222223333221035676510------1210345-5431147664433101000365---311331000 Q gi|254781101|r 279 K-SMEV--VHHGIGYHMAQNMLMTLGIVSILT------ADVDTAI-KALSVFHPKEGRGKRYRCALNQ---GFFTLIDES 345 (472) Q Consensus 279 ~-~~~~--~l~~~G~hnv~NalaAia~~~~lG------i~~~~i~-~~L~~~~~~~GR~~~~~~~~~~---~~~~iIDDs 345 (472) T Consensus 234 ~~~~~~~~~~~L~G~~Q~~Na~~A~~~~~~l~~~~~~~~~~~~~~~~GL~~~~-wpGR~e~~~~~~~~~~~~p~~~lDGA 312 (460) T TIGR01499 234 LFLEPLLAKLSLLGDHQAENAALALAALEVLGKQSSEKLSEAAIRSEGLASTI-WPGRLEILSEDKDAKAANPNILLDGA 312 (460) T ss_pred CCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEECCCCHHHCCCEEEEECC T ss_conf 42100135556567999999999999999850235666676678889888511-12201133035412233871799527 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCC----E-EEEECCC------HHHH Q ss_conf 256532101257778741110268713885123541710589999999999864998----9-9998803------8989 Q gi|254781101|r 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS----H-VWLSGFH------VLAL 414 (472) Q Consensus 346 YNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d----~-v~~~G~~------~~~~ 414 (472) T Consensus 313 --HNp~~~~~l~~~~~~-~~~~~~~~~~~~~~l~------~Kd~~~~l~~L~~~-~~~i~~~~~~~~~~~~~~a~~~~~~ 382 (460) T TIGR01499 313 --HNPHSAEALVEWLKE-KEFNGRPITLLFGALA------DKDAAAMLALLREL-VPKIFEEIVYVTPFDYPRALDAADL 382 (460) T ss_pred --CCHHHHHHHHHHHHH-HHHCCCCCEEEEEECC------CCCHHHHHHHHHHH-HHHHHCEEEEECCCCCCCCCCHHHH T ss_conf --687899999999999-8626997188886113------68878998887874-3565221768617786233675789 Q ss_pred HHHCCCCC-C-----EEEECCHHHHHHHH---------------------HH--HCCCCCEEEEECCCHHHHHHHHHHHH Q ss_conf 98511379-7-----99978989999999---------------------98--44789899997713254899999999 Q gi|254781101|r 415 KDALPRSI-H-----VHYSETMDGLFLFI---------------------QS--SLVDGDVVVVKSSNSCGFYRLINLLL 465 (472) Q Consensus 415 ~~~~~~~~-~-----~~~~~~~e~a~~~l---------------------~~--~~~~gdiVLiKGSr~~~le~iv~~L~ 465 (472) T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~lVtGSly-----Lvg~v~ 457 (460) T TIGR01499 383 EAAAEAFGSEELEKAAETVSSWREALELAEKLDEAQKVSALIEIAYLLVALEKEKAKADDLILVTGSLY-----LVGEVR 457 (460) T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHH-----HHHHHH T ss_conf 999974054156677876730899997166787655102457789888888750567677378872599-----999999 Q ss_pred H Q ss_conf 8 Q gi|254781101|r 466 E 466 (472) Q Consensus 466 ~ 466 (472) T Consensus 458 ~ 458 (460) T TIGR01499 458 K 458 (460) T ss_pred H T ss_conf 8 |
3.2.17 from EC (FPGS) is responsible for the addition of a polyglutamate tail to folate and folate derivatives, is an ATP-dependent enzyme isolated from eukaryotic and bacterial sources, where it plays a key role in the retention of the intracellular folate pool Its sequence is moderately conserved between prokaryotes (gene folC) and eukaryotes. FPGS belongs to a protein family that contains a number of related peptidoglycan synthetases (Mur) 6.3.2. from EC (see |
>KOG2525 consensus | Back alignment and domain information |
---|
Probab=99.89 E-value=1.8e-21 Score=161.27 Aligned_cols=323 Identities=19% Similarity=0.176 Sum_probs=192.7 Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC---CCCHH--HHHCCC---CCCCH--------- Q ss_conf 98999999999998306993999830365420123346777752011---22212--211014---57410--------- Q gi|254781101|r 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT---YACIG--SYNNHI---GVPLT--------- 152 (472) Q Consensus 90 d~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~---~~t~g--n~Nn~i---Gvplt--------- 152 (472) T Consensus 55 ~m~~~L~~lg~p-~d~~~l~iIHVAGTkGKGStcaF~~SILr~~g~rtG~yTSPHLl~vrErIriNGqpIS~e~F~~~f~ 133 (496) T KOG2525 55 RMRKLLERLGNP-EDQNSLNIIHVAGTKGKGSTCAFTESILRQQGLRTGFYTSPHLLSVRERIRINGQPISEEKFTKYFW 133 (496) T ss_pred HHHHHHHHHCCH-HHHHHEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHCCHHHEEEECCEECCHHHHHHHHH T ss_conf 999999970986-5443224799823789864589899999842636632268001553245888998789999999999 Q ss_pred ------------------------HCC----CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHH-HH Q ss_conf ------------------------001----2322144430156644332112122323220255531210123444-57 Q gi|254781101|r 153 ------------------------LAR----MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GI 203 (472) Q Consensus 153 ------------------------ll~----~~~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~-s~ 203 (472) T Consensus 134 ~v~~~lk~~~~~~~~~p~yF~fLT~lAF~~F~~enVdvaViEvGlG--G~~DaTNvI~kpvvcgITslG~DH~~~LG~tL 211 (496) T KOG2525 134 EVYERLKSTKLKEVSMPTYFEFLTLLAFHVFVKENVDVAVIEVGLG--GELDATNVIEKPVVCGITSLGLDHTSFLGNTL 211 (496) T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHEEEEECCCCEEEEEECCC--CCCCCCCCCCCCEEEEEEECCCCHHHHHHHHH T ss_conf 9999887763065678735556675442015555886899984356--66566533136458998405775288886589 Q ss_pred HHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 88886543310376221012101342468998752012333332222222222222344211346510012456543221 Q gi|254781101|r 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 (472) Q Consensus 204 e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~~~~~~~~~~~~~~~~~~~~ 283 (472) T Consensus 212 ~eIA~eKAGIfK~gvpaf--t~~q~~e~~nvL~~ra~e~~~~L~~---v~p--------------~~~~~l------s~~ 266 (496) T KOG2525 212 SEIAWEKAGIFKEGVPAF--TVPQPPEALNVLKERASELGVPLFV---VPP--------------LEAYEL------SGV 266 (496) T ss_pred HHHHHHHCCCCCCCCCEE--ECCCCHHHHHHHHHHHHHCCCCCEE---CCC--------------CHHHHH------CCC T ss_conf 999887446240588548--7588578899999988733788355---388--------------146550------487 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHH----C---------------CCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEE Q ss_conf 22222222333322103567651----0---------------1210345543114766443310100036531133100 Q gi|254781101|r 284 VHHGIGYHMAQNMLMTLGIVSIL----T---------------ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 (472) Q Consensus 284 ~l~~~G~hnv~NalaAia~~~~l----G---------------i~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDD 344 (472) T Consensus 267 ~lgl~g~hq~~na~lA~~L~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~l~GL~~~~-wPGR~qil~~--~~~~~~llDG 342 (496) T KOG2525 267 NLGLIGTHQWSNASLAVQLASEWLIQNGRVAEGVLDALQTSGLIP-PAFLSGLASTD-WPGRLQILEY--GRGVTWLLDG 342 (496) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-HHHHCCHHHCC-CCCCEEEEEC--CCCCEEEECC T ss_conf 654006513443578988899999863850105787322366789-89961203245-7870689862--8985799658 Q ss_pred CCCCCCCCHHHHHHHHHH-HHHCCCCC-CEEEECCHHHCCCCHHHHHHHHHHHHHH-----CCCCEEEEECCC------- Q ss_conf 025653210125777874-11102687-1388512354171058999999999986-----499899998803------- Q gi|254781101|r 345 SYNANPASMKAAISVLSQ-ISPHGEGR-RIAVLGDMCEMGELSQSFHIDLAEVLSL-----YNISHVWLSGFH------- 410 (472) Q Consensus 345 sYNAnP~S~~aal~~l~~-~~~~~~~r-~i~VlG~m~ELG~~~~~~h~~i~~~~~~-----~~~d~v~~~G~~------- 410 (472) T Consensus 343 A--Ht~eSaea~~~w~~~~~~~~~~~~~~illfn~t---~~~d~~---~Ll~~L~~~~~~~~~F~~Vvf~Pni~~~~~~~ 414 (496) T KOG2525 343 A--HTKESAEACAKWFRKAVRGLKKLTSLILLFNCT---SDRDPP---LLLPLLKPDAVIGTRFSSVVFMPNITSSSPVG 414 (496) T ss_pred C--CCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEC---CCCCHH---HHHHHHCCCCCCCCCCCEEEECCCCCCCCCCC T ss_conf 9--998999999999999853677765269999803---776647---67677454654344514178524431158766 Q ss_pred HH-----------HH------H----HHCC----CCCCEEEECCHHHHHHHHHHHCCCCCEEEEECC Q ss_conf 89-----------89------9----8511----379799978989999999984478989999771 Q gi|254781101|r 411 VL-----------AL------K----DALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 (472) Q Consensus 411 ~~-----------~~------~----~~~~----~~~~~~~~~~~e~a~~~l~~~~~~gdiVLiKGS 452 (472) T Consensus 415 ~~d~~~~~~s~~~~l~~q~~L~~~w~~l~~~~~~~~~~~~V~~sL~~a~~~Lr~~~~~s~~~~V~gs 481 (496) T KOG2525 415 SADSISLNTSTEEQLNWQNDLQSVWEELKESEGKTEDPSIVFGSLYLAYELLRDDQHLSPRIEVLGS 481 (496) T ss_pred CHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCCCCCEEEEEEE T ss_conf 6455415677268777758999999998655887313236734599999999842777770899988 |
|
>pfam08245 Mur_ligase_M Mur ligase middle domain | Back alignment and domain information |
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Probab=100.00 E-value=2.3e-42 Score=299.51 Aligned_cols=186 Identities=36% Similarity=0.470 Sum_probs=167.7 Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCC-CCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEE Q ss_conf 830365420123346777752011222122110145741000123-2214443015664433211212232322025553 Q gi|254781101|r 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 (472) Q Consensus 113 ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~-~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTN 191 (472) T Consensus 1 VTGT~GKTTt~~ml~~iL~~~g~~~~~~g~~~~~ig~~~~~~~~~~~~~~~~V~E~~~~~~~~-~~l~~~~~P~iaviTN 79 (188) T pfam08245 1 ITGTNGKTTTTELIAALLSAAGGVVGTGGNTNNAIGLPLLLALMERKGADYAVLELSSFGLGE-GRLEGLAKPDIAVITN 79 (188) T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCH-HHHCCCCCCCEEEEEC T ss_conf 937586899999999999838998998388474577999997666469968999832777107-6552777899999945 Q ss_pred ECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 12101234445788886543310376221012101342468998752012333332222222222222344211346510 Q gi|254781101|r 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271 (472) Q Consensus 192 I~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~~~~~~~~ 271 (472) T Consensus 80 i~~DHld~~~s~e~~~~~K~~i~~~~~~~g~~v~n~Dd~~~~~~~~~~~----~~~~t~g~~~~~d~~~~~i~~~~~~~~ 155 (188) T pfam08245 80 ISPDHLDYHGTMENYAAAKAEIFEGLPEDGIAVINADDPELAKRLKNAG----AKVITFGLENEADDRAANIYVSSEGGK 155 (188) T ss_pred CHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCC----CCEEEEECCCCCCEEEEEEEECCCCCE T ss_conf 7655646621799999999999972999999999898888999998669----846998568765604467899589968 Q ss_pred CCC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHH Q ss_conf 012-45654322122222222333322103567 Q gi|254781101|r 272 MEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 (472) Q Consensus 272 ~~~-~~~~~~~~~~l~~~G~hnv~NalaAia~~ 303 (472) T Consensus 156 ~~~~~~~~~~~~~~l~l~G~HNv~NalaAia~A 188 (188) T pfam08245 156 IVLFTVPGGELEISLPLPGRHNVYNALAALAAA 188 (188) T ss_pred EEEEECCCEEEEEEECCCCHHHHHHHHHHHHHC T ss_conf 999962993899998866399999999999959 |
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>pfam01225 Mur_ligase Mur ligase family, catalytic domain | Back alignment and domain information |
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Probab=99.71 E-value=5.9e-17 Score=131.39 Aligned_cols=76 Identities=34% Similarity=0.350 Sum_probs=67.8 Q ss_pred EEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHH Q ss_conf 474677402223789888971688747688899999869889998552124554469728995998999999999998 Q gi|254781101|r 26 FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103 (472) Q Consensus 26 ~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~~~i~v~d~~~al~~la~~~~ 103 (472) T Consensus 1 eI~~i~~dSr~v~~g~lF~a~~G~~~dG~~fi~~a~~~GA~ai~~~~~~~--~~~~~~~~i~v~d~~~aL~~la~~fy 76 (76) T pfam01225 1 EIHFIGIDSRGMSPGALFLALKGYRVDGSDFAESAIALGAVAVVSSAIPR--DPNPEVPGIPVIDRREALAELAARFY 76 (76) T ss_pred CCCEEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCC--CCCCCCCEEEECCHHHHHHHHHHHHC T ss_conf 90658878772799999998077867999999999980998999936545--67999739998999999999999769 |
This family contains a number of related ligase enzymes which have EC numbers 6.3.2.*. This family includes: MurC, MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure and MurF catalyse consecutive steps in the synthesis of peptidoglycan. Peptidoglycan consists of a sheet of two sugar derivatives, with one of these N-acetylmuramic acid attaching to a small pentapeptide. The pentapeptide is is made of L-alanine, D-glutamic acid, Meso-diaminopimelic acid and D-alanyl alanine. The peptide moiety is synthesized by successively adding these amino acids to UDP-N-acetylmuramic acid. MurC transfers the L-alanine, MurD transfers the D-glutamate, MurE transfers the diaminopimelic acid, and MurF transfers the D-alanyl alanine. This family also includes Folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate. |
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
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Probab=98.15 E-value=2.6e-05 Score=54.41 Aligned_cols=95 Identities=16% Similarity=0.169 Sum_probs=75.3 Q ss_pred CCCCHHHHHHHHCCEEECCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCC Q ss_conf 43567889987279995268871474677402223789888971688747688899999869889998552124554469 Q gi|254781101|r 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 (472) Q Consensus 3 ~~~~~~~l~~~~~g~~~~~~~~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~ 82 (472) T Consensus 1 ~s~tL~eIA~~lgg~l~G-d~d~~I~gva-~l~~A~~~~IsF~~------~~ky~~~L~~tkAsavIv~~~~~~~~-~~~ 71 (343) T PRK00892 1 PSLTLAELAEQLGAELHG-DGDIEITGLA-PLDEAGPGQLSFLD------NPKYRKQLKDTQAGAVIVSPDDAEKV-PAH 71 (343) T ss_pred CCCCHHHHHHHHCCEEEC-CCCCEEECCC-CHHHCCCCCEEEEE------CHHHHHHHHCCCCEEEEECHHHHHHC-CCC T ss_conf 963199999975999977-9982796454-96668998099995------88888887557874999547888557-588 Q ss_pred CCEEEECCHHHHHHHHHHHHHHCC Q ss_conf 728995998999999999998306 Q gi|254781101|r 83 IPVFGVDDVLGALNKLAVAARLRS 106 (472) Q Consensus 83 ~~~i~v~d~~~al~~la~~~~~~~ 106 (472) T Consensus 72 ~~~Iiv~nP~~afaki~~lF~~~~ 95 (343) T PRK00892 72 RAALVVKNPYLAFARVAQLFDTPP 95 (343) T ss_pred CCEEEECCHHHHHHHHHHHHCCCC T ss_conf 738998998999999999746764 |
|
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
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Probab=96.96 E-value=0.004 Score=39.92 Aligned_cols=96 Identities=19% Similarity=0.184 Sum_probs=73.6 Q ss_pred CCCCHHHHHHHHCCEEECCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCC Q ss_conf 43567889987279995268871474677402223789888971688747688899999869889998552124554469 Q gi|254781101|r 3 PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82 (472) Q Consensus 3 ~~~~~~~l~~~~~g~~~~~~~~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~ 82 (472) T Consensus 2 ~~~~l~~la~~~~~e~~g~~-~~~i~~va~l~-~a~~~~i~f~------~~~ky~~~l~~s~Agaviv~~~~~~-~~~~~ 72 (338) T COG1044 2 PSYTLAELAQQLGAELRGDG-DRVITGVAPLD-EAQPGDISFL------ANPKYRKELKTSRAGAVIVSAKDAA-FAPAK 72 (338) T ss_pred CCCHHHHHHHHHCCEEECCC-CEEEECCCHHH-HCCCCCCEEE------CCHHHHHHCCCCCCCEEEECHHHHH-CCCCC T ss_conf 52009999975183882578-42562013244-4484451562------2733343112376758995589972-06668 Q ss_pred CCEEEECCHHHHHHHHHHHHHHCCC Q ss_conf 7289959989999999999983069 Q gi|254781101|r 83 IPVFGVDDVLGALNKLAVAARLRSK 107 (472) Q Consensus 83 ~~~i~v~d~~~al~~la~~~~~~~~ 107 (472) T Consensus 73 ~~~Lv~~~P~~~fA~~~~~f~~~~~ 97 (338) T COG1044 73 KNALVVKDPYLAFAKVAQLFYRPFN 97 (338) T ss_pred CEEEEECCCHHHHHHHHHHHCCCCC T ss_conf 7089948806789999988514776 |
|
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; InterPro: IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (2 | Back alignment and domain information |
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Probab=96.04 E-value=0.036 Score=33.55 Aligned_cols=93 Identities=16% Similarity=0.132 Sum_probs=72.3 Q ss_pred HHHHHHCCEEECC-CCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEE Q ss_conf 8998727999526-887147467740222378988897168874768889999986988999855212455446972899 Q gi|254781101|r 9 DLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87 (472) Q Consensus 9 ~l~~~~~g~~~~~-~~~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~~~i~ 87 (472) T Consensus 1 ela~~~~~El~g~a~g~~~i~~v~~l-~~A~~~~itF~~------n~K~~~~l~~~~AgAv~~~~~~~~~~~~~~~~~L~ 73 (336) T TIGR01853 1 ELAERLGAELKGDAEGDIKISGVAPL-EKAKAEHITFLA------NPKYLKELKSSKAGAVIVSADDQSKLVPKKCAALV 73 (336) T ss_pred CCHHHCCCEEECCCCCCEEEEEECCC-CCCCCCCEEEEC------CHHHHHHHHCCCCEEEEEEHHHCCCCCCCCCCEEE T ss_conf 90442085023566676688530763-358802266533------80478765157740799715661785523250578 Q ss_pred ECCHHHHHHHHHHHHHHCCCC Q ss_conf 599899999999999830699 Q gi|254781101|r 88 VDDVLGALNKLAVAARLRSKA 108 (472) Q Consensus 88 v~d~~~al~~la~~~~~~~~~ 108 (472) T Consensus 74 v~~P~l~fA~~~~~F~~~~~~ 94 (336) T TIGR01853 74 VKDPYLAFAKVAELFDPPPKR 94 (336) T ss_pred ECCCHHHHHHHHHHHCCCCCC T ss_conf 178179999999860887650 |
3.1 from EC) catalyses an early step in lipid A biosynthesis : |
>pfam04613 LpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD | Back alignment and domain information |
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Probab=95.06 E-value=0.11 Score=30.43 Aligned_cols=70 Identities=19% Similarity=0.213 Sum_probs=50.9 Q ss_pred CCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHH Q ss_conf 714746774022237898889716887476888999998698899985521245544697289959989999999999 Q gi|254781101|r 24 QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101 (472) Q Consensus 24 ~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~~~i~v~d~~~al~~la~~ 101 (472) T Consensus 2 d~~I~~va~-l~~A~~~~isF~------~n~ky~~~l~~t~A~aviv~~~~~~~-~~~~~~~Iiv~nP~~afa~i~~l 71 (72) T pfam04613 2 DREISGIAP-LEEAGPGDISFL------ANPKYLKQLKTTKASAVIVTPDFADL-VPEGIALLVVKNPYLAFAKLLQL 71 (72) T ss_pred CCEEECCCC-HHHCCCCCEEEE------CCHHHHHHHHHCCCCEEEECHHHHHH-CCCCCCEEEECCHHHHHHHHHHH T ss_conf 947804547-643899978996------68878999986889899973788745-76898689989989999999975 |
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.-) catalyses an early step in lipid A biosynthesis: UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + (R)-3-hydroxytetradecanoyl- [acyl carrier protein] - UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine + [acyl carrier protein]. Members of this family also contain a hexapeptide repeat (pfam00132). This family constitutes the non-repeating region of LPXD proteins. |
>pfam07085 DRTGG DRTGG domain | Back alignment and domain information |
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Probab=94.34 E-value=0.34 Score=27.11 Aligned_cols=87 Identities=15% Similarity=0.219 Sum_probs=56.0 Q ss_pred HHHHHHCCEEECCCCC--CEEEEEEEECC-------CCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCC-- Q ss_conf 8998727999526887--14746774022-------237898889716887476888999998698899985521245-- Q gi|254781101|r 9 DLLQAIQGHSIGIVPQ--GFVNGISIDSR-------SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-- 77 (472) Q Consensus 9 ~l~~~~~g~~~~~~~~--~~i~~i~~dSr-------~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~-- 77 (472) T Consensus 1 ~I~~~L~g~vl~g~~~~~~~v~~~~igAm~~~~~l~~~~~g~lvI-~~gdR~di---~~~a~~~~~~~iIlTgg~~p~~~ 76 (105) T pfam07085 1 DIAEILGAEVLNGGEGLLRRVGKVVIGAMSVENMLEYLRPGDLVI-TPGDREDI---QLAALLAGIAGLILTGGFEPSEE 76 (105) T ss_pred CHHHHCCCEEEECCCCCCCCCCCEEEEECCHHHHHHHHCCCCEEE-EECCCHHH---HHHHHHHCCCEEEEECCCCCCHH T ss_conf 957866999997686654205869999878999998606897999-92796899---99999824878999489898999 Q ss_pred ----CCCCCCCEEEEC-CHHHHHHHHH Q ss_conf ----544697289959-9899999999 Q gi|254781101|r 78 ----IGSLSIPVFGVD-DVLGALNKLA 99 (472) Q Consensus 78 ----~~~~~~~~i~v~-d~~~al~~la 99 (472) T Consensus 77 v~~la~~~~ipii~t~~dT~~ta~~i~ 103 (105) T pfam07085 77 VLKLAEEAGLPVLSTPYDTFTTARRIN 103 (105) T ss_pred HHHHHHHCCCEEEEECCCHHHHHHHHH T ss_conf 999998779839996688999999985 |
This presumed domain is about 120 amino acids in length. It is found associated with CBS domains pfam00571, as well as the CbiA domain pfam01656. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea (Bateman A, pers. obs.). |
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription] | Back alignment and domain information |
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Probab=90.97 E-value=0.43 Score=26.43 Aligned_cols=95 Identities=18% Similarity=0.311 Sum_probs=54.6 Q ss_pred CCHHHHHHHHCCEEECCCCC--CEEEEEEEEC-------CCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEEC---- Q ss_conf 56788998727999526887--1474677402-------2237898889716887476888999998698899985---- Q gi|254781101|r 5 WTFHDLLQAIQGHSIGIVPQ--GFVNGISIDS-------RSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN---- 71 (472) Q Consensus 5 ~~~~~l~~~~~g~~~~~~~~--~~i~~i~~dS-------r~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~---- 71 (472) T Consensus 71 LTf~Eiv~iidgqVLgG~~Gl~k~~sKFvIGAMt~~~i~rY~~~g~LlI--VGnR~~iq~l---AL~~~~AVLvTGGF~~ 145 (432) T COG4109 71 LTFAEIVNIIDGQVLGGRAGLEKELSKFVIGAMTLDAILRYLDPGGLLI--VGNREDIQLL---ALENGNAVLVTGGFDV 145 (432) T ss_pred HHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE--EECHHHHHHH---HHHCCCEEEEECCCCC T ss_conf 1199998762350432632266654665043521988996107895699--9468999999---9864985999579886 Q ss_pred -CCCCCCCCCCCCCEEEEC-CHHHHHHHHHHHHHH Q ss_conf -521245544697289959-989999999999983 Q gi|254781101|r 72 -TDMVASIGSLSIPVFGVD-DVLGALNKLAVAARL 104 (472) Q Consensus 72 -~~~~~~~~~~~~~~i~v~-d~~~al~~la~~~~~ 104 (472) T Consensus 146 s~evi~lAne~~lPvlstsYDTFTVAtmIN~Al~n 180 (432) T COG4109 146 SDEVIKLANEKGLPVLSTSYDTFTVATMINKALSN 180 (432) T ss_pred CHHHHHHHCCCCCCEEEECCCCEEHHHHHHHHHHH T ss_conf 58899764014884487045213099999899877 |
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>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer | Back alignment and domain information |
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Probab=90.96 E-value=0.15 Score=29.46 Aligned_cols=71 Identities=30% Similarity=0.351 Sum_probs=42.1 Q ss_pred CCCCCEEEECC--CCCCCHH--------HHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCC Q ss_conf 37898889716--8874768--------8899999869889998552124554469728995998999999999998306 Q gi|254781101|r 37 IAPQEAFFAIK--GPHYDGH--------DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106 (472) Q Consensus 37 v~~g~lFval~--g~~~DGh--------~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~~~i~v~d~~~al~~la~~~~~~~ 106 (472) T Consensus 76 ivegEL--PldflGsRFeGl~PPVV~~p~F---~IRkkA~~vfTLDdYV~~g-------im---taaQ~d~l~~Av~ar~ 140 (315) T TIGR02782 76 IVEGEL--PLDFLGSRFEGLLPPVVEAPSF---AIRKKAVRVFTLDDYVEAG-------IM---TAAQRDVLREAVAARK 140 (315) T ss_pred EEEECC--CCCHHHCCCCCCCCCCCCCCCC---HHCCCCCCCCCCHHHHHHC-------CC---CHHHHHHHHHHHHHCC T ss_conf 266107--5111201100468775565510---1110224104707776404-------45---5789999999997129 Q ss_pred CCCEEEEECCCCCCHHH Q ss_conf 99399983036542012 Q gi|254781101|r 107 KATIIAITGSVGKTTTK 123 (472) Q Consensus 107 ~~~vI~ITGTnGKTTt~ 123 (472) T Consensus 141 NIlv~GGTGS-GKTTLa 156 (315) T TIGR02782 141 NILVVGGTGS-GKTTLA 156 (315) T ss_pred CEEEECCCCC-CHHHHH T ss_conf 8899814588-579999 |
TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA .. |
>pfam02875 Mur_ligase_C Mur ligase family, glutamate ligase domain | Back alignment and domain information |
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Probab=99.00 E-value=1.2e-09 Score=83.15 Aligned_cols=78 Identities=28% Similarity=0.375 Sum_probs=61.8 Q ss_pred CCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCC Q ss_conf 64433101000365311331000256532101257778741110268713885123541710589999999999864998 Q gi|254781101|r 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402 (472) Q Consensus 323 ~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d 402 (472) T Consensus 1 vpGR~e~i~~---~~~~~vi~D-yaHnp~~~~a~l~~~~~~---~~~r~i~V~G~~---g~r~~~~r~~~g~~a~~~-ad 69 (87) T pfam02875 1 VPGRLEVVGE---NNGVLVIDD-YAHNPDALEAALQALKEL---FDGRLILVFGAG---GDRDAEFHALLGALAAAL-AD 69 (87) T ss_pred CCCCCEEEEC---CCCCEEEEE-CCCCHHHHHHHHHHHHHC---CCCCEEEEECCC---CCCCHHHHHHHHHHHHHC-CC T ss_conf 9997389865---899789996-789969999999999862---688789999998---888678999999999971-99 Q ss_pred EEEEECCCH Q ss_conf 999988038 Q gi|254781101|r 403 HVWLSGFHV 411 (472) Q Consensus 403 ~v~~~G~~~ 411 (472) T Consensus 70 ~viit~~~p 78 (87) T pfam02875 70 VVILTGDYP 78 (87) T ss_pred EEEECCCCC T ss_conf 999999889 |
This family contains a number of related ligase enzymes which have EC numbers 6.3.2.*. This family includes: MurC, MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure and MurF catalyse consecutive steps in the synthesis of peptidoglycan. Peptidoglycan consists of a sheet of two sugar derivatives, with one of these N-acetylmuramic acid attaching to a small pentapeptide. The pentapeptide is is made of L-alanine, D-glutamic acid, Meso-diaminopimelic acid and D-alanyl alanine. The peptide moiety is synthesized by successively adding these amino acids to UDP-N-acetylmuramic acid. MurC transfers the L-alanine, MurD transfers the D-glutamate, MurE transfers the diaminopimelic acid, and MurF transfers the D-alanyl alanine. This family also includes Folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate. |
>PRK05439 pantothenate kinase; Provisional | Back alignment and domain information |
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Probab=95.26 E-value=0.017 Score=35.82 Aligned_cols=27 Identities=48% Similarity=0.594 Sum_probs=23.1 Q ss_pred CCEEEEECC--CCCCHHHHHHHHHHHHHH Q ss_conf 939998303--654201233467777520 Q gi|254781101|r 108 ATIIAITGS--VGKTTTKEMLTIALSSIK 134 (472) Q Consensus 108 ~~vI~ITGT--nGKTTt~~~l~~iL~~~~ 134 (472) T Consensus 86 PfIIGIaGSVAVGKSTtARlLq~LL~r~~ 114 (312) T PRK05439 86 PFIIGIAGSVAVGKSTTARLLQALLSRWP 114 (312) T ss_pred CEEEEEEEEEECCHHHHHHHHHHHHHCCC T ss_conf 98999762010262889999999995078 |
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>TIGR03453 partition_RepA plasmid partitioning protein RepA | Back alignment and domain information |
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Probab=91.60 E-value=0.12 Score=30.07 Aligned_cols=29 Identities=38% Similarity=0.398 Sum_probs=26.2 Q ss_pred CCCEEEEE---CCCCCCHHHHHHHHHHHHHHC Q ss_conf 99399983---036542012334677775201 Q gi|254781101|r 107 KATIIAIT---GSVGKTTTKEMLTIALSSIKK 135 (472) Q Consensus 107 ~~~vI~IT---GTnGKTTt~~~l~~iL~~~~~ 135 (472) T Consensus 103 ~~~VIav~N~KGGVGKTTtav~LA~~LA~~G~ 134 (387) T TIGR03453 103 HLQVIAVTNFKGGSGKTTTSAHLAQYLALRGY 134 (387) T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC T ss_conf 88089997888765699999999999997799 |
Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error. |
>PRK13869 plasmid-partitioning protein RepA; Provisional | Back alignment and domain information |
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Probab=91.09 E-value=0.15 Score=29.48 Aligned_cols=29 Identities=38% Similarity=0.403 Sum_probs=25.9 Q ss_pred CCCEEEEE---CCCCCCHHHHHHHHHHHHHHC Q ss_conf 99399983---036542012334677775201 Q gi|254781101|r 107 KATIIAIT---GSVGKTTTKEMLTIALSSIKK 135 (472) Q Consensus 107 ~~~vI~IT---GTnGKTTt~~~l~~iL~~~~~ 135 (472) T Consensus 120 ~~kVIaVaN~KGGVGKTTtav~LA~~LA~~G~ 151 (405) T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGY 151 (405) T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCC T ss_conf 98289997888776599999999999997799 |
|
>TIGR01968 minD_bact septum site-determining protein MinD; InterPro: IPR010223 This entry describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum | Back alignment and domain information |
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Probab=90.42 E-value=0.21 Score=28.48 Aligned_cols=30 Identities=47% Similarity=0.586 Sum_probs=24.6 Q ss_pred CEEEEE---CCCCCCHHHHHHHHHHHHHHCCCC Q ss_conf 399983---036542012334677775201122 Q gi|254781101|r 109 TIIAIT---GSVGKTTTKEMLTIALSSIKKTYA 138 (472) Q Consensus 109 ~vI~IT---GTnGKTTt~~~l~~iL~~~~~~~~ 138 (472) T Consensus 2 ~viViTSGKGGVGKTTtTANlG~aLA~lG~kVv 34 (272) T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVV 34 (272) T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEE T ss_conf 589998178897735898999999996198289 |
In Escherichia coli, the cell division site is determined by the cooperative activity of min operon products MinC, MinD, and MinE . MinD is a membrane-associated ATPase and is a septum site-determining factor through the activation and regulation of MinC and MinE. MinD is also known to undergo a rapid pole-to-pole oscillation movement in vivo as observed by fluorescent microscopy. In plants, chloroplast division requires the dimerisation of stromal MinD . The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.; GO: 0016887 ATPase activity, 0000918 selection of site for barrier septum formation. |
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
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Probab=93.14 E-value=0.53 Score=25.85 Aligned_cols=45 Identities=11% Similarity=0.017 Sum_probs=28.8 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCC Q ss_conf 001245654322122222222333322103567651012103455431147 Q gi|254781101|r 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321 (472) Q Consensus 271 ~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~ 321 (472) T Consensus 466 ~FD~~tl~PtYrl~~G~pG~S~------A~~IA~rlGlp~~ii~~A~~~l~ 510 (780) T PRK00409 466 EFDEETLRPTYRLLIGIPGRSN------AFEIAKRLGLPPNIIEEAKKVYG 510 (780) T ss_pred EECCCCCCCCEEEECCCCCCCH------HHHHHHHHCCCHHHHHHHHHHHC T ss_conf 8740237860687059997636------99999992979999999998856 |
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>TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin | Back alignment and domain information |
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Probab=92.83 E-value=0.049 Score=32.70 Aligned_cols=41 Identities=20% Similarity=0.354 Sum_probs=26.4 Q ss_pred HCCCCCCCHHHHHCCCCCCCCCCC---------CCCCCCCCCEEEEEEECC Q ss_conf 001232214443015664433211---------212232322025553121 Q gi|254781101|r 153 LARMPVDVDFGIFELGMSHLGEIR---------FLTHLVRPHIAVITTIAP 194 (472) Q Consensus 153 ll~~~~~~~~~V~E~g~~~~gei~---------~L~~i~~P~iaiiTNI~~ 194 (472) T Consensus 116 le~L~~~Yd~vv~E-GAGS~AEINL~~rDLaN~~iA~~~~A~~iLvADIDR 165 (502) T TIGR00313 116 LEILAEEYDLVVIE-GAGSPAEINLKERDLANMRIAELADADVILVADIDR 165 (502) T ss_pred HHHHHCCCCEEEEE-CCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCC T ss_conf 98752028889982-688710005331572247898643976799975077 |
NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process. |
>TIGR01069 mutS2 MutS2 family protein; InterPro: IPR005747 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome | Back alignment and domain information |
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Probab=92.27 E-value=0.86 Score=24.47 Aligned_cols=42 Identities=21% Similarity=0.358 Sum_probs=24.6 Q ss_pred CHHHHHHHHHHH----CCCC-CEEEE---ECCCHHHHHHHHHHHHHHCCCCC Q ss_conf 989999999984----4789-89999---77132548999999998505779 Q gi|254781101|r 429 TMDGLFLFIQSS----LVDG-DVVVV---KSSNSCGFYRLINLLLEEFPAIQ 472 (472) Q Consensus 429 ~~e~a~~~l~~~----~~~g-diVLi---KGSr~~~le~iv~~L~~~~~~~~ 472 (472) T Consensus 765 R~E~Al~~LeK~l~~A~laG~~~v~IIHGKG~-G-~L~~~V~e~Lk~h~~Vk 814 (834) T TIGR01069 765 RSEEALDRLEKFLDDALLAGYEVVEIIHGKGS-G-KLRKGVQELLKNHPKVK 814 (834) T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC-C-HHHHHHHHHHHCCCCEE T ss_conf 27999999999999998789847899840266-5-05688998986299546 |
It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication . MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base . MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch . MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level . Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure , and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions . Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts . This entry represents a family of MutS proteins.; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0045005 maintenance of fidelity during DNA-dependent DNA replication. |
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase; InterPro: IPR002082 Aspartate carbamoyltransferase (ATCase) catalyses the formation of carbamoyl-aspartate in the pyrimidine biosynthesis pathway, by the association of aspartate and carbamoyl-phosphate | Back alignment and domain information |
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Probab=92.04 E-value=0.93 Score=24.25 Aligned_cols=114 Identities=18% Similarity=0.335 Sum_probs=71.0 Q ss_pred EEE--ECCCCCCCCHHHHHH--HHHHHHH-------CCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECC Q ss_conf 310--002565321012577--7874111-------02687138851235417105899999999998649989999880 Q gi|254781101|r 341 LID--ESYNANPASMKAAIS--VLSQISP-------HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409 (472) Q Consensus 341 iID--DsYNAnP~S~~aal~--~l~~~~~-------~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~ 409 (472) T Consensus 137 viNAGDG~~qHPT--Q~LLDLyTi~~~fGPDnP~l~~~~Gl~iA~vGDlk----ygRtvhS~~-~~L~~f~~~~v~l~sP 209 (336) T TIGR00670 137 VINAGDGSGQHPT--QTLLDLYTIYEEFGPDNPALERLDGLKIALVGDLK----YGRTVHSLI-KALALFGNAEVYLISP 209 (336) T ss_pred EEECCCCCCCCCC--HHHHHHHHHHHHHCCCCCCHHHCCCCEEEEEEECC----CCHHHHHHH-HHHHHHCCCEEEEECC T ss_conf 6636878787975--34788999998718886303222885799984312----024766788-9986518956998677 Q ss_pred CH----HHHHHHCC-CCCCEEEECCHHHHHHHHHHHCCCCCEE---EEECCCHHHHHHHHHHHHHHCCCC Q ss_conf 38----98998511-3797999789899999999844789899---997713254899999999850577 Q gi|254781101|r 410 HV----LALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVV---VVKSSNSCGFYRLINLLLEEFPAI 471 (472) Q Consensus 410 ~~----~~~~~~~~-~~~~~~~~~~~e~a~~~l~~~~~~gdiV---LiKGSr~~~le~iv~~L~~~~~~~ 471 (472) T Consensus 210 ~~LrmP~~~~e~~~~~G~~~~~~~~l~e~-------~~~~DVlkiWY~t--R-iQkER~~~~d~~ey~~~ 269 (336) T TIGR00670 210 EELRMPKEILEDLKAKGVKVRETESLEEV-------IDEADVLKIWYVT--R-IQKERFPEDDPEEYEKV 269 (336) T ss_pred HHHHCHHHHHHHHHHCCCEEEEEEEHHHH-------HCCCCEEEEEEEE--C-CCCCCCCCCCHHHHHHH T ss_conf 24306178899985289628995224344-------2157847886420--0-11123788788999841 |
This is the commitment step in the Escherichia coli pathway and is regulated by feedback inhibition by CTP, the final product of the pathway. The structural organisation of the ATCase protein varies considerably between different organisms. In bacteria such as E. coli, Salmonella typhimurium and Serratia marcescens, the ATCase is a dodecamer of 2 catalytic (c) trimers and 3 regulatory (r) dimers. The catalytic domains are coded for by the pyrB gene, and the regulatory domains by pyrI. In Gram-positive bacteria such as Bacillus subtilis, ATCase exists as a trimer of catalytic subunits, but unlike in E. coli, it neither contains nor binds to regulatory subunits. In eukaryotes, ATCase is found as a single domain in a multifunctional enzyme that contains activity for glutamine amidotransferase, carbamoylphosphate synthetase, dihydroorotase, and aspartate carbamoyltransferase. ; GO: 0004070 aspartate carbamoyltransferase activity, 0006207 'de novo' pyrimidine base biosynthetic process. |
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional | Back alignment and domain information |
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Probab=90.04 E-value=0.34 Score=27.11 Aligned_cols=97 Identities=12% Similarity=0.134 Sum_probs=48.5 Q ss_pred CCCCCCEEEECCH-HHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHH--HHHHCCCCCC---EEEE---CCHHHHHHH Q ss_conf 0268713885123-54171058999999999986499899998803898--9985113797---9997---898999999 Q gi|254781101|r 366 HGEGRRIAVLGDM-CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--LKDALPRSIH---VHYS---ETMDGLFLF 436 (472) Q Consensus 366 ~~~~r~i~VlG~m-~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~--~~~~~~~~~~---~~~~---~~~e~a~~~ 436 (472) T Consensus 528 ~~~~kvi~vTS~~pgE-GKSt~--a~nLA~~~A~~G-~rvLLID~DlRrp~l~~~~~~~~~~GLs~~L~g~~~~~~~i~- 602 (726) T PRK09841 528 ETENNILMITGATPDS-GKTFV--SSTLAAVIAQSD-QKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQ- 602 (726) T ss_pred CCCCCEEEEECCCCCC-CHHHH--HHHHHHHHHHCC-CEEEEECCCCCCCCHHHHCCCCCCCCHHHHHCCCCCHHHHCC- T ss_conf 8888689997799999-77999--999999998479-959998288777107761599999877998389998899330- Q ss_pred HHHHCCCCCEEEEECC---------CHHHHHHHHHHHHHHCC Q ss_conf 9984478989999771---------32548999999998505 Q gi|254781101|r 437 IQSSLVDGDVVVVKSS---------NSCGFYRLINLLLEEFP 469 (472) Q Consensus 437 l~~~~~~gdiVLiKGS---------r~~~le~iv~~L~~~~~ 469 (472) T Consensus 603 --~~~~~~ldvl~aG~~p~nP~elL~s~~~~~ll~~l~~~yD 642 (726) T PRK09841 603 --HFGKGGFDVITRGQVPPNPSELLMRDRMRQLLEWANDHYD 642 (726) T ss_pred --CCCCCCEEEEECCCCCCCHHHHHCCHHHHHHHHHHHHCCC T ss_conf --2798998998289999798999587699999999981399 |
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>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB; InterPro: IPR014132 This entry describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria | Back alignment and domain information |
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Probab=91.38 E-value=0.19 Score=28.79 Aligned_cols=155 Identities=14% Similarity=0.137 Sum_probs=82.9 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCC-CCCCHHHHHHHHHH Q ss_conf 22222222333322103567651012103455431147664433101000365311331000256-53210125777874 Q gi|254781101|r 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA-NPASMKAAISVLSQ 362 (472) Q Consensus 284 ~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNA-nP~S~~aal~~l~~ 362 (472) T Consensus 24 IL~~L~~~~vk~ATFFlsG~Wae~hP-elvk~-lveI~---~~GH--EI--GsHgY~h~~--~~~l~~E~ikkd~~~a~~ 92 (198) T TIGR02764 24 ILDTLKEEDVKNATFFLSGSWAERHP-ELVKE-LVEIV---KDGH--EI--GSHGYRHKN--YTTLEDEKIKKDLLRAQE 92 (198) T ss_pred HHHHHHHCCCCCCCCEEEHHHHHCCH-HHHHH-HHHHH---HCCC--CC--CCCCCCCCC--CCCCCHHHHHHHHHHHHH T ss_conf 76667655885333024315761277-89999-99998---4484--30--335421242--125876489999999888 Q ss_pred HHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEE--CCCHHHHHHHCCCCCCEEEECCHHHHHHHHHHH Q ss_conf 111026871388512354171058999999999986499899998--803898998511379799978989999999984 Q gi|254781101|r 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440 (472) Q Consensus 363 ~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~--G~~~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~ 440 (472) T Consensus 93 ~i~~~~g~~p~LlRpP--~G~fn----~~~~~~ae~~GY~~V~WsWHvd-S~DWk-----------NPG~e~iv~~V~~~ 154 (198) T TIGR02764 93 IIEKLTGKKPTLLRPP--NGAFN----KAVLKLAESLGYTVVHWSWHVD-SLDWK-----------NPGVESIVDRVVKN 154 (198) T ss_pred HHHHHCCCCEEEEECC--CCCCC----HHHHHHHHHCCCCEEEEECCCC-CCCCC-----------CCCEEHHHHHHHCC T ss_conf 8865105550165688--98604----6899999973991898624558-83545-----------78610001113312 Q ss_pred CCCCCEEEEE-CCCHH-----HHHHHHHHHHHH Q ss_conf 4789899997-71325-----489999999985 Q gi|254781101|r 441 LVDGDVVVVK-SSNSC-----GFYRLINLLLEE 467 (472) Q Consensus 441 ~~~gdiVLiK-GSr~~-----~le~iv~~L~~~ 467 (472) T Consensus 155 ~~~GdIiL~HDASd~~KqT~~ALp~Ii~~LK~~ 187 (198) T TIGR02764 155 TKPGDIILLHDASDSAKQTVKALPEIIKKLKEK 187 (198) T ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHC T ss_conf 799856987634879744177899998998754 |
Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reduced sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterised polysaccharide deacetylase; the exact function this protein family is unknown.. |
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit; InterPro: IPR005969 Synonym: dark protochlorophyllide reductase Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls | Back alignment and domain information |
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Probab=91.32 E-value=1.1 Score=23.75 Aligned_cols=79 Identities=20% Similarity=0.228 Sum_probs=53.2 Q ss_pred CCCCCEEEECCHHHCCCCHHHHHHHHHHHHH-HCCCCEEEEECCCHHHHHHHCC----C-CC-CEEEECCHHHHHHHHHH Q ss_conf 2687138851235417105899999999998-6499899998803898998511----3-79-79997898999999998 Q gi|254781101|r 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLS-LYNISHVWLSGFHVLALKDALP----R-SI-HVHYSETMDGLFLFIQS 439 (472) Q Consensus 367 ~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~-~~~~d~v~~~G~~~~~~~~~~~----~-~~-~~~~~~~~e~a~~~l~~ 439 (472) T Consensus 307 L~GKra~VFGD------~tHa--vg~T~~L~~ElG~-~vv~AGTY~k~~a~wvr~~~~gY~dGEvlv~ddf~~v~~~I~- 376 (562) T TIGR01278 307 LTGKRAFVFGD------ATHA--VGVTKLLRDELGI-HVVGAGTYCKEQADWVREQVAGYVDGEVLVTDDFQEVADAIA- 376 (562) T ss_pred CCCCCEEEECC------CHHH--HHHHHHHHHHCCC-EEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH- T ss_conf 15884698678------4489--9999998863791-798724798668999999983038824888253588999998- Q ss_pred HCCCCCEEEEECCCHHHHHHHH Q ss_conf 4478989999771325489999 Q gi|254781101|r 440 SLVDGDVVVVKSSNSCGFYRLI 461 (472) Q Consensus 440 ~~~~gdiVLiKGSr~~~le~iv 461 (472) T Consensus 377 ~~~P~-lv~-----GTQMERH~ 392 (562) T TIGR01278 377 ALEPE-LVL-----GTQMERHV 392 (562) T ss_pred HHCCC-CEE-----CCCHHHHH T ss_conf 60852-010-----56425677 |
The light-independent (dark) form of protochlorophyllide reductase plays a key role in the ability of gymnosperms, algae, and photosynthetic bacteria to form chlorophyll in the dark. Genetic and sequence analyses have indicated that dark protochlorophyllide reductase consists of three protein subunits that exhibit significant sequence similarity to the three subunits of nitrogenase, which catalyzes the reductive formation of ammonia from dinitrogen. Dark protochlorophyllide reductase activity was shown to be dependent on the presence of all three subunits, ATP, and the reductant dithionite .; GO: 0016730 oxidoreductase activity acting on iron-sulfur proteins as donors, 0015995 chlorophyll biosynthetic process, 0019685 photosynthesis dark reaction. |
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage | Back alignment and domain information |
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Probab=91.22 E-value=0.24 Score=28.18 Aligned_cols=110 Identities=25% Similarity=0.322 Sum_probs=56.2 Q ss_pred HHHHHHHHHHHH-CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHC-CC--------CCC-CH Q ss_conf 999999999983-06993999830365420123346777752011222122110145741000-12--------322-14 Q gi|254781101|r 93 GALNKLAVAARL-RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RM--------PVD-VD 161 (472) Q Consensus 93 ~al~~la~~~~~-~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll-~~--------~~~-~~ 161 (472) T Consensus 16 ~AI~~L~~~l~~G~~~QtLLGvTGs-GKTFT~AnVIa~~~rPTLV~aHNK----------TLAAQLY~EfKefFPeNAVE 84 (667) T TIGR00631 16 KAIAKLVEGLEAGEKEQTLLGVTGS-GKTFTMANVIAQVQRPTLVLAHNK----------TLAAQLYNEFKEFFPENAVE 84 (667) T ss_pred HHHHHHHHHHHCCCCCEEEEEEECC-CHHHHHHHHHHHHCCCEEEECCCH----------HHHHHHHHHHHHHCCCCCEE T ss_conf 9999999998568871478532148-627889899998479849985777----------67999999998638677245 Q ss_pred HHH------------------HC--CCCCCCCCCCCC-----CC-CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 443------------------01--566443321121-----22-32322025553121012344457888865433103 Q gi|254781101|r 162 FGI------------------FE--LGMSHLGEIRFL-----TH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215 (472) Q Consensus 162 ~~V------------------~E--~g~~~~gei~~L-----~~-i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~ 215 (472) T Consensus 85 YFvSYYDYYQPEAYvP~~DtyIEKdaSINd--eIerlR~SAT~SLl~RrDVIVVASVSc--IYGLG~P~~Y~~~~~~l~v 160 (667) T TIGR00631 85 YFVSYYDYYQPEAYVPSKDTYIEKDASIND--EIERLRLSATKSLLERRDVIVVASVSC--IYGLGSPEEYLKMVLHLEV 160 (667) T ss_pred EEEECCCCCCCCCCCCCCCCEEECCCCHHH--HHHHHHHHHHHHHCCCCCEEEEEEEEE--ECCCCCCHHHHCCEEEEEE T ss_conf 255203237873214798841304553004--676778898886423787899987552--0688882556422786540 Q ss_pred CC Q ss_conf 76 Q gi|254781101|r 216 GL 217 (472) Q Consensus 216 ~l 217 (472) T Consensus 161 G~ 162 (667) T TIGR00631 161 GK 162 (667) T ss_pred CC T ss_conf 78 |
They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex. |
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
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Probab=90.28 E-value=0.98 Score=24.08 Aligned_cols=17 Identities=12% Similarity=0.100 Sum_probs=12.7 Q ss_pred EEEEECCCCCCCCEEEE Q ss_conf 67740222378988897 Q gi|254781101|r 29 GISIDSRSIAPQEAFFA 45 (472) Q Consensus 29 ~i~~dSr~v~~g~lFva 45 (472) T Consensus 26 AvIls~r~i~~g~~~~~ 42 (407) T COG1419 26 AVILSNRRIKKGGFLGL 42 (407) T ss_pred CEEEECCEECCCCEEEE T ss_conf 18854336347825632 |
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>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism] | Back alignment and domain information |
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Probab=90.16 E-value=0.15 Score=29.46 Aligned_cols=75 Identities=25% Similarity=0.296 Sum_probs=48.2 Q ss_pred HHCCCEEEEECCCCCC-CCCCCCCCEEEECCHHHHHHHHHHHHHH-----------------CCCCCEEEEECCC--CCC Q ss_conf 9869889998552124-5544697289959989999999999983-----------------0699399983036--542 Q gi|254781101|r 61 VQKGAGLVVVNTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAARL-----------------RSKATIIAITGSV--GKT 120 (472) Q Consensus 61 ~~~Ga~~~i~~~~~~~-~~~~~~~~~i~v~d~~~al~~la~~~~~-----------------~~~~~vI~ITGTn--GKT 120 (472) T Consensus 17 ~~~~~~~~lt~~e~~~~~~ln~~~~l~eV~~iylpL~~l~~~~~~~~~~~~~~~~~~l~~~~~~~pfIIgiaGsvavGKS 96 (283) T COG1072 17 LRASTPLTLTEEELKRLRGLNEPISLDEVEDIYLPLSRLLQLYVEARERLFAELLRFLGTNNQQRPFIIGIAGSVAVGKS 96 (283) T ss_pred HHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHH T ss_conf 54058642678999886067889779999999999999999999889988999999834668888879996057665577 Q ss_pred HHHHHHHHHHHHHHC Q ss_conf 012334677775201 Q gi|254781101|r 121 TTKEMLTIALSSIKK 135 (472) Q Consensus 121 Tt~~~l~~iL~~~~~ 135 (472) T Consensus 97 T~ar~L~~ll~~~~~ 111 (283) T COG1072 97 TTARILQALLSRWPE 111 (283) T ss_pred HHHHHHHHHHHHCCC T ss_conf 899999999963889 |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 472 | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimel | ||
1gg4_A | 452 | Crystal Structure Of Escherichia Coli Udpmurnac-Tri | 7e-64 | |
2am1_A | 454 | Sp Protein Ligand 1 Length = 454 | 4e-56 | |
1e8c_A | 498 | Structure Of Mure The Udp-N-Acetylmuramyl Tripeptid | 1e-24 | |
2wtz_A | 535 | Mure Ligase Of Mycobacterium Tuberculosis Length = | 2e-21 | |
1gqq_A | 475 | Murc - Crystal Structure Of The Apo-Enzyme From Hae | 1e-08 | |
1p31_A | 475 | Crystal Structure Of Udp-N-Acetylmuramic Acid:l-Ala | 3e-06 | |
3lk7_A | 451 | The Crystal Structure Of Udp-N-Acetylmuramoylalanin | 1e-05 | |
1e0d_A | 437 | Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase L | 1e-07 | |
2jff_A | 445 | Crystal Structure Of Murd Ligase In Complex With D- | 1e-07 | |
2uag_A | 437 | Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase L | 1e-07 | |
2wjp_A | 439 | Crystal Structure Of Murd Ligase In Complex With D- | 1e-07 |
>gi|12084404|pdb|1GG4|A Chain A, Crystal Structure Of Escherichia Coli Udpmurnac-Tripeptide D-Alanyl-D-Alanine-Adding Enzyme (Murf) At 2.3 Angstrom Resolution Length = 452 | Back alignment and structure |
Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats. Identities = 132/463 (28%), Positives = 206/463 (44%), Gaps = 21/463 (4%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 T L + G G ++ ++ D+R + P F A+KG +D HDF A GA Sbjct: 5 TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62 Query: 66 GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125 G ++V+ + + +P V D A +LA R + A ++A+TGS GKT+ KE Sbjct: 63 GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEX 117 Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 LS T G+ NN IGVP TL R+ + D+ + ELG +H GEI + L RP Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPXTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177 Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245 A++ +A AHL F + +A AK EIF GL + G N D++ + ++ + + Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIXNADNNDWLNWQSVIGSRKVW 237 Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305 + N+DF S + +Q S++V+ G H N L + Sbjct: 238 R--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSXS 295 Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365 + A +D L+ GR + A N L+D+SYNAN S AA+ VL+ Sbjct: 296 VGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSXTAAVQVLA---- 348 Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425 G R+ V+GD E+G S++ H+ + E I V G A+ A S Sbjct: 349 EXPGYRVLVVGDXAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA---SGVGE 405 Query: 426 YSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466 + L ++ + + V ++VK S S ++ L E Sbjct: 406 HFADKTALITRLKLLIAEQQVITILVKGSRSAAXEEVVRALQE 448 |
>gi|88192084|pdb|2AM1|A Chain A, Sp Protein Ligand 1 Length = 454 | Back alignment and structure |
Score = 223 bits (569), Expect = 4e-56, Method: Composition-based stats. Identities = 124/472 (26%), Positives = 193/472 (40%), Gaps = 30/472 (6%) Query: 5 WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63 T H++ Q + I I + DSR I + F +KG DGHDFI A + Sbjct: 3 LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61 Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123 GA + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK Sbjct: 62 GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115 Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183 + L LS+ KTY G+YNN IG+P T+ P + + E G HLG+I L+ L R Sbjct: 116 DXLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHXPEGTEKLVLEXGQDHLGDIHLLSELAR 175 Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243 P A++T + AHL+ F EIA K +I +G + D + L Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKXQIADGXASGSLLLAPADPIVEDYL------PI 229 Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 K + FG+ + + + + + G + A N + + Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAXIASYVA 285 Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363 + A R + + A ++ + YNANP + K + S I Sbjct: 286 LQEGVSEEQIRLAFQHLELTRNRTEWKKAANGAD---ILSDVYNANPTAXKLILETFSAI 342 Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421 + G++IAVL D E+G+ S H LS + V G + L + Sbjct: 343 PANEGGKKIAVLADXKELGDQSVQLHNQXILSLSPDVLDIVIFYGEDIAQLAQLASQXFP 402 Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 HV+Y + + L ++ SL D +++K SNS +L+ L Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSXNLAKLVESLEN 454 |
>gi|15988379|pdb|1E8C|A Chain A, Structure Of Mure The Udp-N-Acetylmuramyl Tripeptide Synthetase From E. Coli Length = 498 | Back alignment and structure |
Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 73/478 (15%), Positives = 143/478 (29%), Gaps = 47/478 (9%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + ++DSR A + F A+ G DG +I A+ +G Sbjct: 4 NLRDLL----APWVPDAPSRALREXTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 59 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 60 AAIIAEAKDEATDGEIREXHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 119 Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL----------- 167 TTT ++L + + + N +G + EL Sbjct: 120 TTTTQLLAQWSQLLGEISAVXGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 179 Query: 168 --GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 +S G ++ ++ +V T ++ HL E +A ++ I Sbjct: 180 AXEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDXEHYEAAXWLLYSEHHCGQAIIN 239 Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + + + + E+ Sbjct: 240 ADDEVGRRWLAKLPDAVAVSXEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 299 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H G N+L+ L + L + +K + P GR + + Sbjct: 300 SHLXGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRXEVFTAPGKPTVVVDYAH 359 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404 + +A L H G+ V G G L ++ Sbjct: 360 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLXGAIAEEFADVA 408 Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451 ++ + + + H E + DVV+V K Sbjct: 409 VVTDDNPRTEEPRAIINDILAGXLDAGHAKVXEGRAEAVTCAVXQAKENDVVLVAGKG 466 |
>gi|281306936|pdb|2WTZ|A Chain A, Mure Ligase Of Mycobacterium Tuberculosis Length = 535 | Back alignment and structure |
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 78/482 (16%), Positives = 148/482 (30%), Gaps = 50/482 (10%) Query: 7 FHDLLQAIQGHSIGIV------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 L + V G+++ ++ ++P + F A+ G G + A Sbjct: 36 LAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDA 95 Query: 61 VQKGAGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117 + +GA V+ + VA I G ++PV G L LA T+I ITG+ Sbjct: 96 IARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 155 Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIF 165 GKTTT ++ L + + IG+ +G P A + V+ G+ Sbjct: 156 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 215 Query: 166 E--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223 + +S R + T ++ HL + + A A +F+ Sbjct: 216 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAXASLFDPDSALRAR 275 Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 + A T+ + + + Q + + G + Sbjct: 276 TAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHI 335 Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 G + N L+ L I+ + + A+ L + R L Sbjct: 336 GIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGF-----LAL 390 Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403 Y P ++++ ++ L+ H + R V G G+ + + + Sbjct: 391 VDYAHKPEALRSVLTTLA----HPDRRLAVVFGA---GGDRDPGKRAPMGRIAAQL-ADL 442 Query: 404 VWLSGFHVLA----------LKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV-- 449 V ++ + L A E + GDVV++ Sbjct: 443 VVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAG 502 Query: 450 KS 451 K Sbjct: 503 KG 504 |
gi|33356936|pdb|1GQQ|A Chain A, Murc - Crystal Structure Of The Apo-Enzyme From Haemophilus Influenzae Length = 475 | Back alignment and structure |
Score = 66.0 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 73/416 (17%), Positives = 146/416 (35%), Gaps = 50/416 (12%) Query: 56 FILHAVQK--GAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSK 107 +I HA + GA +VVV++ + IPV A LA R R Sbjct: 67 YIGHAEEHIEGASVVVVSSAIKDDNPELVTSKQKRIPVIQ-----RA-QMLAEIMRFRHG 120 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 IA+ G+ GKTTT M+++ + K + + I E Sbjct: 121 ---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKS---AGKNAHLGASRYLIAEA 174 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226 S + ++P ++V+T + P H+ + E++ + + L G + Sbjct: 175 DESDASFLH-----LQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMC 229 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVH 285 DD L K + + ++G S+ AD+++ ++Q + + + + + V+ Sbjct: 230 ADDPVLMELVPKV----GRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLL 285 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 + G H A N L + + ++AL+ F R + + + + Sbjct: 286 NVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD 345 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 Y +P + I + G G + V+ ++ D +VLS + + Sbjct: 346 YGHHPTEVGVTIKA----AREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQ--VDALI 399 Query: 406 -----------LSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448 + G +L ++ V L + + DGD+++ Sbjct: 400 MLDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLIL 455 |
>gi|34811495|pdb|1P31|A Chain A, Crystal Structure Of Udp-N-Acetylmuramic Acid:l-Alanine Ligase (Murc) From Haemophilus Influenzae Length = 475 | Back alignment and structure |
Score = 57.9 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 72/416 (17%), Positives = 139/416 (33%), Gaps = 50/416 (12%) Query: 56 FILHAVQK--GAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSK 107 +I HA + GA +VVV++ + IPV A LA R R Sbjct: 67 YIGHAEEHIEGASVVVVSSAIKDDNPELVTSKQKRIPVIQ-----RA-QXLAEIXRFRHG 120 Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167 IA+ G+ GKTTT ++ + K + + I E Sbjct: 121 ---IAVAGTHGKTTTTAXISXIYTQAKLDPTFVNGGLVKS---AGKNAHLGASRYLIAEA 174 Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226 S + ++P ++V+T P H + E+ + + L G Sbjct: 175 DESDASFLH-----LQPXVSVVTNXEPDHXDTYEGDFEKXKATYVKFLHNLPFYGLAVXC 229 Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVH 285 DD L K + + ++G S+ AD+++ ++Q + + + + + V+ Sbjct: 230 ADDPVLXELVPKV----GRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLL 285 Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345 + G H A N L + + ++AL+ F R + + + + Sbjct: 286 NVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD 345 Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405 Y +P + I + G G + V ++ D +VLS + + Sbjct: 346 YGHHPTEVGVTIKA----AREGWGDKRIVXIFQPHRYSRTRDLFDDFVQVLSQ--VDALI 399 Query: 406 -----------LSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448 + G +L ++ V L + + DGD+++ Sbjct: 400 XLDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLIL 455 |
>gi|288563201|pdb|3LK7|A Chain A, The Crystal Structure Of Udp-N-Acetylmuramoylalanine-D- Glutamate (Murd) Ligase From Streptococcus Agalactiae To 1.5a Length = 451 | Back alignment and structure |
Score = 56.0 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 76/390 (19%), Positives = 135/390 (34%), Gaps = 45/390 (11%) Query: 69 VVNTDMVASIGSLSIPVFGVDDVLGALNKL------AVAARLRSKATIIAITGSVGKTTT 122 +++ D I + IP V AL K A L S++ +I ITGS GKTTT Sbjct: 68 LLDEDFCYXIKNPGIPY-NNPXVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTT 126 Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181 + L++ + G +IG P + + D D + EL L ++ Sbjct: 127 TTXIAEVLNAGGQR----GLLAGNIGFPASEVVQAANDKDTLVXELSSFQLXGVKEF--- 179 Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241 RPHIAVIT + P HL E+ +AK I + + LN++ + L Sbjct: 180 -RPHIAVITNLXPTHLDYHGSFEDYVAAKWNIQNQXSSSDFLVLNFNQGISKELAK---T 235 Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301 + K ++ + + + G H +N L T+ Sbjct: 236 TKATIVPFSTTEKVDGAYVQDKQLFYKG-------ENIXSVDDIGVPGSHNVENALATIA 288 Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 + + + LS F + R + + ++S + N + Sbjct: 289 VAKLAGISNQVIRETLSNFGGVKHRL---QSLGKVHGISFYNDSKSTNILA------TQK 339 Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421 +S + I + G G + +L + + H + G +K A ++ Sbjct: 340 ALSGFDNTKVILIAG-----GLDRGNEFDELIPDI--TGLKHXVVLGESASRVKRAAQKA 392 Query: 422 IHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449 V YS+ + GDV+++ Sbjct: 393 G-VTYSDALDVRDAVHKAYEVAQQGDVILL 421 |
>gi|9257128|pdb|1E0D|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase Length = 437 | Back alignment and structure |
Score = 63.0 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 69/376 (18%), Positives = 130/376 (34%), Gaps = 50/376 (13%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 ++A I+AITGS GK+T ++ + +IG+P + + + + Sbjct: 98 FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDDECE 152 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220 + EL L T ++ A I + H+ + G+++ +AK I+E + Sbjct: 153 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 208 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + + + G+ + ++W+ V+ + Sbjct: 209 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 256 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 G H N L L + +++KAL+ F R L Sbjct: 257 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 313 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 I++S N S +AA++ L H +G +LG + + S LA L+ N Sbjct: 314 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 363 Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452 + ++ G L P +ETM+ + + GD+V++ +S Sbjct: 364 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 420 Query: 453 ----NSCGFYRLINLL 464 F RL L Sbjct: 421 NFEQRGNEFARLAKEL 436 |
>gi|149242346|pdb|2JFF|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu Containing Sulfonamide Inhibitor Length = 445 | Back alignment and structure |
Score = 63.0 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 68/376 (18%), Positives = 129/376 (34%), Gaps = 50/376 (13%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 ++A I+AITGS GK+T ++ + +IG+P + + + + Sbjct: 99 FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDDECE 153 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220 + EL L T ++ A I + H+ + G+++ +A I+E + Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAXLRIYENAKVC 209 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + + + G+ + ++W+ V+ + Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 257 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 G H N L L + +++KAL+ F R L Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 I++S N S +AA++ L H +G +LG + + S LA L+ N Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364 Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452 + ++ G L P +ETM+ + + GD+V++ +S Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421 Query: 453 ----NSCGFYRLINLL 464 F RL L Sbjct: 422 NFEQRGNEFARLAKEL 437 |
>gi|7245651|pdb|2UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase Length = 437 | Back alignment and structure |
Score = 63.0 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 68/376 (18%), Positives = 129/376 (34%), Gaps = 50/376 (13%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 ++A I+AITGS GK+T ++ + +IG+P + + + + Sbjct: 98 FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDDECE 152 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220 + EL L T ++ A I + H+ + G+++ +A I+E + Sbjct: 153 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAXLRIYENAKVC 208 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + + + G+ + ++W+ V+ + Sbjct: 209 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 256 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 G H N L L + +++KAL+ F R L Sbjct: 257 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 313 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 I++S N S +AA++ L H +G +LG + + S LA L+ N Sbjct: 314 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 363 Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452 + ++ G L P +ETM+ + + GD+V++ +S Sbjct: 364 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 420 Query: 453 ----NSCGFYRLINLL 464 F RL L Sbjct: 421 NFEQRGNEFARLAKEL 436 |
>gi|304445552|pdb|2WJP|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu Containing Rhodanine Inhibitor Length = 439 | Back alignment and structure |
Score = 63.0 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 68/376 (18%), Positives = 129/376 (34%), Gaps = 50/376 (13%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 ++A I+AITGS GK+T ++ + +IG+P + + + + Sbjct: 98 FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDDECE 152 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220 + EL L T ++ A I + H+ + G+++ +A I+E + Sbjct: 153 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAXLRIYENAKVC 208 Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280 + + + G+ + ++W+ V+ + Sbjct: 209 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 256 Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340 G H N L L + +++KAL+ F R L Sbjct: 257 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 313 Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400 I++S N S +AA++ L H +G +LG + + S LA L+ N Sbjct: 314 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 363 Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452 + ++ G L P +ETM+ + + GD+V++ +S Sbjct: 364 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 420 Query: 453 ----NSCGFYRLINLL 464 F RL L Sbjct: 421 NFEQRGNEFARLAKEL 436 |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 472 | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimel | ||
1gg4_A | 452 | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimel | 3e-71 | |
1e8c_A | 498 | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopim | 1e-60 | |
2am1_A | 454 | SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysi | 3e-47 | |
2wtz_A | 535 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diamino | 2e-46 | |
1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta protei | 6e-32 | |
3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, str | 9e-22 | |
2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond liga | 1e-19 | |
1j6u_A | 469 | UDP-N-acetylmuramate-alanine ligase MURC; structural ge | 6e-18 | |
3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalac | 1e-20 | |
2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-bi | 4e-17 | |
1jbw_A | 428 | Folylpolyglutamate synthase; FPGS folate AMPPCP ternary | 7e-07 | |
3nrs_A | 437 | Dihydrofolate:folylpolyglutamate synthetase; structural | 9e-05 | |
3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- MESO-di | 1e-06 |
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 452 | Back alignment and structure |
---|
Score = 264 bits (675), Expect = 3e-71 Identities = 133/470 (28%), Positives = 211/470 (44%), Gaps = 22/470 (4%) Query: 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60 M + T L + G G ++ ++ D+R + P F A+KG +D HDF A Sbjct: 1 MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57 Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120 GAG ++V+ + + +P V D A +LA R + A ++A+TGS GKT Sbjct: 58 KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112 Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180 + KEM LS T G+ NN IGVP+TL R+ + D+ + ELG +H GEI + Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172 Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 L RP A++ +A AHL F + +A AK EIF GL + G +N D++ + ++ Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 + + + N+DF S + +Q S++V+ G H N L Sbjct: 233 SRKVWRFSPN--AANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290 Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 + + A +D L+ GR + L+D+SYNAN SM AA+ VL Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQ---LAENQLLLDDSYNANVGSMTAAVQVL 347 Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420 +++ G R+ V+GDM E+G S++ H+ + E I V G A+ A Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTASGV 403 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KSSNSCGFYRLINLLLEEF 468 H L ++ + + V+ + K S S ++ L E Sbjct: 404 GEHF---ADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRALQENG 450 |
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.0A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 498 | Back alignment and structure |
---|
Score = 229 bits (584), Expect = 1e-60 Identities = 76/471 (16%), Positives = 158/471 (33%), Gaps = 37/471 (7%) Query: 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65 DLL + P + +++DSR A + F A+ G DG +I A+ +G Sbjct: 4 NLRDLLAPW----VPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 59 Query: 66 GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGK 119 ++ A+ G + +PV + + L+ LA ++ +TG+ GK Sbjct: 60 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 119 Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIF 165 TTT ++L + + A +G+ N + + VD Sbjct: 120 TTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 179 Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 + +S G ++ ++ +V T ++ HL +E +AK ++ I Sbjct: 180 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 239 Query: 226 NYDDSFFELLKAKSHALGIKTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284 D+ L A+ + + + + + E+ Sbjct: 240 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 299 Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344 H +G N+L+ L + L + +K + P GR + + G T++ Sbjct: 300 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAP---GKPTVVV- 355 Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS----LYN 400 Y P +++ A+ G+ V G + + + +AE + + + Sbjct: 356 DYAHTPDALEKALQAARLHCA---GKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTD 412 Query: 401 ISHVWLSGFHVLA-LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450 + ++ + + + H E + DVV+V Sbjct: 413 DNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVA 463 |
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase, MURF protein...; HET: 1LG; 2.50A {Streptococcus pneumoniae R6} PDB: 2am2_A* Length = 454 | Back alignment and structure |
---|
Score = 184 bits (468), Expect = 3e-47 Identities = 122/469 (26%), Positives = 191/469 (40%), Gaps = 30/469 (6%) Query: 6 TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64 T H++ Q + + I I + DSR I + F +KG DGHDFI A + G Sbjct: 4 TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENG 62 Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124 A + + ++ + P VDDVL A LA ++ + A+TGS GKTTTK+ Sbjct: 63 AAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKD 116 Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 ML LS+ KTY G+YNN IG+P T+ MP + + E+G HLG+I L+ L RP Sbjct: 117 MLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARP 176 Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244 A++T + AHL+ F EIA K +I +G+ + D + Sbjct: 177 KTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVED----------Y 226 Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304 I +L + + + + G + A N ++ + Sbjct: 227 LPIDKKVVRFGQGAELEITDLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVAL 286 Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364 + A R ++ + YNANP +MK + S I Sbjct: 287 QEGVSEEQIRLAFQHLEL---TRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIP 343 Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422 + G++IAVL DM E+G+ S H + LS + V G + L + Sbjct: 344 ANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFPI 403 Query: 423 -------HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 + + L ++ SL D +++K SNS +L+ L Sbjct: 404 GHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESL 452 |
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, cytoplasm; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} Length = 535 | Back alignment and structure |
---|
Score = 182 bits (461), Expect = 2e-46 Identities = 75/450 (16%), Positives = 141/450 (31%), Gaps = 36/450 (8%) Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSIPV 85 V G+++ ++ ++P + F A+ G G + A+ +GA V+ + VA I G ++PV Sbjct: 62 VTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVAEIAGRAAVPV 121 Query: 86 FGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143 G L LA + T+I ITG+ GKTTT ++ L + + IG+ Sbjct: 122 LVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTI 181 Query: 144 NNHIGVPLTLA--------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189 +G + V+ + +S R + Sbjct: 182 GIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGTRFAVGAF 241 Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249 T ++ HL + + AKA +F+ + A T+ + Sbjct: 242 TNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAADAITVSA 301 Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 + + Q + + G + G + N L+ L I+ + Sbjct: 302 ADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLVALAILDTVGVS 361 Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 + A+ L + R L Y P ++++ ++ L+ Sbjct: 362 PEQAVPGLREIRVPGRLEQIDRG-----QGFLALVDYAHKPEALRSVLTTLAHPDRR--- 413 Query: 370 RRIAVLGDMC--------EMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPR 420 V G MG ++ DL V + +LA + Sbjct: 414 -LAVVFGAGGDRDPGKRAPMGRIAAQLA-DLVVVTDDNPRDEDPTAIRREILAGAAEVGG 471 Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450 V + GDVV++ Sbjct: 472 DAQVVEIADRRDAIRHAVAWARPGDVVLIA 501 |
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* Length = 475 | Back alignment and structure |
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Score = 134 bits (337), Expect = 6e-32 Identities = 71/424 (16%), Positives = 147/424 (34%), Gaps = 44/424 (10%) Query: 63 KGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 +GA +VVV++ + + + IPV +L A + IA+ G+ Sbjct: 76 EGASVVVVSSAIKDDNPELVTSKQKRIPVIQRAQML---------AEIMRFRHGIAVAGT 126 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKTTT M+++ + K + + A + + I E S + Sbjct: 127 HGKTTTTAMISMIYTQAKLDPTFVN--GGLVKSAGKNAHLGAS-RYLIAEADESDASFLH 183 Query: 177 FLTHLVRPHIAVITTIAPAHL-SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 +P ++V+T + P H+ + E++ + + L G + DD L Sbjct: 184 L-----QPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMCADDPVLMEL 238 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI-GYHMAQ 294 K + + ++G S+ AD+++ ++Q Q V V + G H A Sbjct: 239 VPKVG----RQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGKHNAL 294 Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354 N L + + ++AL+ F R + + + + Y +P + Sbjct: 295 NATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDDYGHHPTEVG 354 Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH--------IDLAEVLSLYNISHVWL 406 I + +RI ++ F +D +L +Y + Sbjct: 355 VTIKAAREGWG---DKRIVMIFQPHRYSRTRDLFDDFVQVLSQVDALIMLDVYAAGEAPI 411 Query: 407 SGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464 G +L ++ + L + + DGD+++ + + S ++ L Sbjct: 412 VGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAGS--VSKISRGL 469 Query: 465 LEEF 468 E + Sbjct: 470 AESW 473 |
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} Length = 524 | Back alignment and structure |
---|
Score = 100 bits (249), Expect = 9e-22 Identities = 69/467 (14%), Positives = 143/467 (30%), Gaps = 71/467 (15%) Query: 51 YDGHDFILHAVQKGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104 +G+ + +Q LVVV D++ + + L + ++ Sbjct: 69 EEGYL--IAHLQPAPDLVVVGNAMKRGMDVIEYMLDTGLRYTSGPQFL--------SEQV 118 Query: 105 RSKATIIAITGSVGKTTTKEMLTIALS-----------------SIKKTYACIGSYNNHI 147 +IA+ G+ GK ML L + + ++++++ Sbjct: 119 LQSRHVIAVAGTHGKXXXXXMLAWILHYAGIDAGFLIGGVPLVNTTDTNLQQVFAHSSYL 178 Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEE 205 G + V+ + + E + V RP A++ + H F+ ++ Sbjct: 179 GTEKDDSDNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFADLDA 238 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT-----------------IY 248 I + + + TG I + E AK I + Sbjct: 239 IQTQFHHMVRMIPSTGKIIMPAATISLEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLE 298 Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQNMLMTLGIVSILT 307 + ++D+Q Q + ++ +V+ G H N L+ + + Sbjct: 299 NSQAENSSDWQAELISADGSQFTVSFNDNKEATALVNWSMSGLHNVNNALVAIAAAYNIG 358 Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367 V TA ALS F + R + L+ + + +P ++ + + Sbjct: 359 VSVKTACAALSAFAGIKRR----MELIGDVNDILVFDDFAHHPTAITTTLDGAKKKLA-- 412 Query: 368 EGRRIAVLGD---MCEMGELSQSF-----HIDLAEVLSLYNISHVWLSGFHVLALKDALP 419 + R A++ +MG S D + W + A P Sbjct: 413 DRRLWAIIEPRSNTMKMGIHQDSLAQSATLADHTLWYEPTGLE--WGLKEVIDNATIANP 470 Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 ++D + I + GD +V+ S+ F + LL Sbjct: 471 SIGSQQVLSSVDDIIKHICTHAKAGDAIVIMSNGG--FEGIHQRLLT 515 |
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} Length = 491 | Back alignment and structure |
---|
Score = 93.0 bits (230), Expect = 1e-19 Identities = 63/423 (14%), Positives = 131/423 (30%), Gaps = 41/423 (9%) Query: 63 KGAGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 + A +VVV++ + + + IPV ++L L IAI G+ Sbjct: 77 RDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLA---------ELMRFRHGIAIAGT 127 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKTTT M++ + + N + + + I E S + Sbjct: 128 HGKTTTTAMVSSIYAEAGLDPTFV---NGGLVKAAGVHARLGHGRYLIAEADESDASFLH 184 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235 +P +A++T I H+ + G E + L G + DD + Sbjct: 185 L-----QPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPV---I 236 Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295 + +G +T + + + ++ + M V + G H A N Sbjct: 237 RELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALN 296 Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF-----TLIDESYNANP 350 + + + D + ++AL F R + ++ + Y +P Sbjct: 297 AAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHP 356 Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCE----MGELSQSF-HIDLAEVLSLYNISHVW 405 + A I P + + + +D +L +Y Sbjct: 357 TEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAP 416 Query: 406 LSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463 + G +L + I + + L D+++V+ + + ++ Sbjct: 417 IPGADSRSLCRTIRGRGKIDPILVPDPARVAEMLAPVLTGNDLILVQGAGN--IGKIARS 474 Query: 464 LLE 466 L E Sbjct: 475 LAE 477 |
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 Length = 469 | Back alignment and structure |
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Score = 87.2 bits (215), Expect = 6e-18 Identities = 62/422 (14%), Positives = 129/422 (30%), Gaps = 45/422 (10%) Query: 63 KGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116 LV+ + + +P+ K R K A+TG+ Sbjct: 70 YDPDLVIKTPAVRDDNPEIVRARMERVPIENRLHYFRDTLK-------REKKEEFAVTGT 122 Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176 GKTTT M+ L ++K+ I L ++EL S Sbjct: 123 DGKTTTTAMVAHVLKHLRKSPTVF---LGGIMDSLEHGNYEKGNGPVVYELDESEEFFSE 179 Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236 F P+ +IT HL N+ + FE + + + + + + Sbjct: 180 F-----SPNYLIITNARGDHLENYGNSLTRYRSA---FEKISRNTDLVVTFAEDELTSHL 231 Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296 K Y+ + + + + + + ++E++L G+H N Sbjct: 232 GDVTFGVKKGTYTLEMRSASRAEQKAMVEKNGKRYLELKL---------KVPGFHNVLNA 282 Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356 L + + L D+ ++AL F R + + D Y P ++ Sbjct: 283 LAVIALFDSLGYDLAPVLEALEEFRGVHRRFSIAFHDPETNIYVIDD--YAHTPDEIRNL 340 Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI-----DLAEVLSLYNISHVWLSGFHV 411 + ++ + + I + +F D V +Y+ +G Sbjct: 341 LQTAKEVFENEKIVVIFQPHRYSRLEREDGNFAKALQLADEVVVTEVYDAFEEKKNGISG 400 Query: 412 LALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470 + D+L ++ E + L I S+ + V + + +E + + Sbjct: 401 KMIWDSLKSLGKEAYFVEKLPELEKVI--SVSENTVFLFVGAGD--IIYSSRRFVERYQS 456 Query: 471 IQ 472 + Sbjct: 457 SK 458 |
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} Length = 451 | Back alignment and structure |
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Score = 96.5 bits (239), Expect = 1e-20 Identities = 65/350 (18%), Positives = 124/350 (35%), Gaps = 34/350 (9%) Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161 A L S++ +I ITGS GK M+ L N + + D D Sbjct: 106 AYLVSESQLIGITGSNGKXXXXXMIAEVL---NAGGQRGLLAGNIGFPASEVVQAANDKD 162 Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221 + EL L ++ RPHIAVIT + P HL E+ +AK I + + Sbjct: 163 TLVMELSSFQLMGVKEF----RPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSD 218 Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281 + LN++ + L + A TI F ++ D + KQ + + + + Sbjct: 219 FLVLNFNQGISKELAKTTKA----TIVPFSTTEKVDGAYVQDKQLFYKGENIMSVDDIGV 274 Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341 G H +N L T+ + + + LS F + R + + Sbjct: 275 ------PGSHNVENALATIAVAKLAGISNQVIRETLSNFGGVKHRLQSLGKVHG---ISF 325 Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401 ++S + N + + A+S + ++ ++ + G D+ + Sbjct: 326 YNDSKSTNILATQKALSGF-------DNTKVILIAGGLDRGNEFDELIPDIT------GL 372 Query: 402 SHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVK 450 H+ + G +K A ++ + + + GDV+++ Sbjct: 373 KHMVVLGESASRVKRAAQKAGVTYSDALDVRDAVHKAYEVAQQGDVILLS 422 |
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2jfg_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* Length = 439 | Back alignment and structure |
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Score = 84.8 bits (209), Expect = 4e-17 Identities = 73/422 (17%), Positives = 136/422 (32%), Gaps = 54/422 (12%) Query: 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV------NTDMVASIGSLSIPV 85 +D+R P + G A L+V +++ I + Sbjct: 34 MDTRMTPPGLDKLPEAVERHTGSLNDEW--LMAADLIVASPGIALAHPSLSAAADAGIEI 91 Query: 86 FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145 G ++ + A I+AITGS GK+T ++ + K Sbjct: 92 VGDIELFCREAQ----------APIVAITGSNGKSTVTTLV----GEMAKAAGVNVGVGG 137 Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205 +IG+P + + + + + EL L L + A I + H+ + Sbjct: 138 NIGLPALM-LLDDECELYVLELSSFQLETTSSL----QAVAATILNVTEDHMDRYPFG-- 190 Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265 + +A E +N DD+ ++ + SFG + Sbjct: 191 LQQYRAAKLRIYENAKVCVVNADDALTMPIRGAD-----ERCVSFGVNMGDYH----LNH 241 Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325 ++W+ V+ + G H N L L + +++KAL+ F G Sbjct: 242 QQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTF---TG 298 Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385 R+ L I++S N S +AA++ L + G+ Sbjct: 299 LPHRFEVVLEHNGVRWINDSKATNVGSTEAALNGLHVDGTL----------HLLLGGDGK 348 Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445 + LA L+ N+ ++ G L P +ETM+ + + GD Sbjct: 349 SADFSPLARYLNGDNV-RLYCFGRDGAQLAALRPE--VAEQTETMEQAMRLLAPRVQPGD 405 Query: 446 VV 447 +V Sbjct: 406 MV 407 |
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A Length = 428 | Back alignment and structure |
---|
Score = 50.8 bits (120), Expect = 7e-07 Identities = 48/343 (13%), Positives = 95/343 (27%), Gaps = 56/343 (16%) Query: 82 SIPVFGVDDVLGALNKLAVAARL---RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138 S P + L L + + I +TG+ GK + + L + T Sbjct: 12 SFPRLAKTGDHRRILTLL--HALGNPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLTVG 69 Query: 139 CIGS-----YNNHIGV-------------------------------PLTLARMPVDVDF 162 S +N I + +T + + Sbjct: 70 LYTSPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALAY 129 Query: 163 GIFE-------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIF 214 F + +G T+++ P ++V+T +A H I IA KA I Sbjct: 130 WYFRQRQVDVAVIEVGIGGDTDSTNVITPVVSVLTEVALDHQKLLGHTITAIAKHKAGII 189 Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 + N ++ AK G + + +L W Q Sbjct: 190 --KRGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDRDFSVPKAKLHGWGQRFTYEDQ-- 245 Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334 G+ ++ +G + +NM + + + + + ++ R Sbjct: 246 --DGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQTEWPLTPQNIRQGLAASHWPARLEK 303 Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377 ++ NP + I+ L Q+ +L D Sbjct: 304 ISDTPLIVI-DGAHNPDGINGLITALKQLFSQPITVIAGILAD 345 |
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* Length = 437 | Back alignment and structure |
---|
Score = 43.7 bits (102), Expect = 9e-05 Identities = 54/327 (16%), Positives = 104/327 (31%), Gaps = 55/327 (16%) Query: 99 AVAARL---RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNNHI--- 147 VA RL + I + G+ GK TT L L + S Y + Sbjct: 40 QVAERLDLLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLRYTERVRIQ 99 Query: 148 ---------------------GVPLTLARMPVDVDFGIFE-------LGMSHLGEIRFLT 179 + LT +F+ + LG T Sbjct: 100 GQELSEAEHSHSFAQIEAGRGDISLTYFEFGTLSALQLFKQAKLDVVILEVGLGGRLDAT 159 Query: 180 HLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238 ++V +A IT+IA H E I KA +F G G + + + + Sbjct: 160 NIVDSDVAAITSIALDHTDWLGYDRESIGREKAGVFRG----GKPAVVGEPDMPQSIADV 215 Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298 + LG + K + + ++ +Q Q ++ + N Sbjct: 216 AAELGAQLYRRDVAWKFSQQEPFDQQEPVDQQINGWHWQCGERQLTGLPVPNVPLANAAT 275 Query: 299 -TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357 + D AI+ GR + +++ ++D ++ NP + + + Sbjct: 276 ALAVLHYSELPLSDEAIRQGLQAASLPGRFQV----VSEQPLLILDVAH--NPHAARYLV 329 Query: 358 SVLSQI----SPHGEGRRIAVLGDMCE 380 + L+Q+ + +G+ AV+G + + Sbjct: 330 NRLAQVINPVNASKQGKVRAVVGMLSD 356 |
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- MESO-diaminopimelate ligase; structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis MC58} Length = 326 | Back alignment and structure |
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Score = 49.7 bits (117), Expect = 1e-06 Identities = 42/225 (18%), Positives = 72/225 (32%), Gaps = 17/225 (7%) Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIK-----KTYACIGSYNNHIGVPLTLARMPV- 158 ++ + G+ GKTTT ML L ++ +P T + P Sbjct: 105 LHHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSARLPQTPRQDPNS 164 Query: 159 DVDFGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216 F + E + V RP AV+ + H F+ + I + + Sbjct: 165 QSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVRT 224 Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276 + G I N + K ++ + +Q + +V L Sbjct: 225 VPSEGLIVCNGRQQSLQDTLDKGCWTPVEKFGT-----EHGWQAGEANADGS---FDVLL 276 Query: 277 QGKSMEVVH-HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320 GK+ V +G H N L + + D+ TA +AL F Sbjct: 277 DGKTAGRVKWDLMGRHNRMNALAVIAAARHVGVDIQTACEALGAF 321 |
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 472 | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimel | ||
1gg4_A | 452 | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimel | 100.0 | |
2am1_A | 454 | SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysi | 100.0 | |
1e8c_A | 498 | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopim | 100.0 | |
2wtz_A | 535 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diamino | 100.0 | |
3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalac | 100.0 | |
2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-bi | 100.0 | |
1j6u_A | 469 | UDP-N-acetylmuramate-alanine ligase MURC; structural ge | 100.0 | |
1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta protei | 100.0 | |
2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond liga | 100.0 | |
3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, str | 100.0 | |
2vos_A | 487 | Folylpolyglutamate synthase protein FOLC; ligase, confo | 100.0 | |
3nrs_A | 437 | Dihydrofolate:folylpolyglutamate synthetase; structural | 100.0 | |
1o5z_A | 442 | Folylpolyglutamate synthase/dihydrofolate synthase; TM0 | 100.0 | |
1jbw_A | 428 | Folylpolyglutamate synthase; FPGS folate AMPPCP ternary | 100.0 | |
1w78_A | 422 | FOLC bifunctional protein; DHFS, dihydrofolate synthase | 100.0 | |
3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- MESO-di | 100.0 | |
3mvn_A | 163 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diami | 99.54 | |
3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransfe | 97.8 | |
2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr | 97.34 | |
1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2.50A { | 94.65 | |
3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose transport | 92.66 | |
1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural genomi | 92.29 | |
1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleotide-bi | 91.11 | |
3end_A | 307 | Light-independent protochlorophyllide reductase iron-su | 90.78 | |
2afh_E | 289 | Nitrogenase iron protein 1; nitrogen fixation, iron-sul | 90.24 | |
3k9g_A | 267 | PF-32 protein; ssgcid, SBRI, decode biostructures, UW, | 90.1 | |
1byi_A | 224 | Dethiobiotin synthase; biotin synthesis, cyclo-ligase, | 90.06 | |
2ioj_A | 139 | Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, stru | 90.4 |
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 | Back alignment and structure |
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Probab=100.00 E-value=0 Score=713.66 Aligned_cols=447 Identities=30% Similarity=0.439 Sum_probs=411.4 Q ss_pred CCCCCCHHHHHHHHCCEEECCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCC Q ss_conf 95435678899872799952688714746774022237898889716887476888999998698899985521245544 Q gi|254781101|r 1 MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80 (472) Q Consensus 1 m~~~~~~~~l~~~~~g~~~~~~~~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~ 80 (472) |..| +|++|+++++|++.+. |..|+++++|||+|+||++|||++|.++|||+|+++|+++||+++|++++. + T Consensus 1 m~~~-~l~~l~~~l~~~l~~~--d~~i~~is~DSr~v~~g~lFval~G~~~dG~~fi~~A~~~GA~~ii~~~~~-----~ 72 (452) T 1gg4_A 1 MISV-TLSQLTDILNGELQGA--DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPL-----D 72 (452) T ss_dssp CCCE-EHHHHHHHTTEEEESC--CCEESCEESCGGGCCTTCEEECCBCSSCBTTTTHHHHHHTTCCEEEESSCC-----S T ss_pred CCCC-CHHHHHHHHCCEEECC--CCCEEEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCC-----C T ss_conf 9777-5999999769998789--825727995478079997899935787788999999998699599986876-----7 Q ss_pred CCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCC Q ss_conf 69728995998999999999998306993999830365420123346777752011222122110145741000123221 Q gi|254781101|r 81 LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160 (472) Q Consensus 81 ~~~~~i~v~d~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~ 160 (472) .++|+|.|+|++++|..||+++|.+++.++||||||||||||++|++++|+..|.++++.||+|+++|+|++++.+.+++ T Consensus 73 ~~~p~i~v~d~~~al~~la~~~~~~~~~~vi~ITGT~GKTTt~~~l~~il~~~g~~~~~~~~~~~~ig~~~~~~~~~~~~ 152 (452) T 1gg4_A 73 IDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEY 152 (452) T ss_dssp CSSCEEEESCHHHHHHHHHHHHHHHSCCEEEEEECSSCHHHHHHHHHHHHTTTSCEEECCTTCCSTTHHHHHHTTCCTTC T ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCC T ss_conf 99999998988999999999987079924699971367404456788777765214302357788737546664302555 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCC Q ss_conf 44430156644332112122323220255531210123444578888654331037622101210134246899875201 Q gi|254781101|r 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240 (472) Q Consensus 161 ~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~ 240 (472) +++|+|+|++++|++.+++..++|+++|||||++||||+|+|+|+|+++|++||+++++++.+|+|.||+.+..+..... T Consensus 153 ~~~v~E~~~~~~~~~~~~~~~~~pdiaviTNI~~dHld~~~s~e~y~~aK~~lf~~l~~~~~~i~n~Dd~~~~~~~~~~~ 232 (452) T 1gg4_A 153 DYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232 (452) T ss_dssp SEEEEECCCSSSSHHHHHHHHHCCSEEEECCCC--------CHHHHHHHHHGGGGGCCTTCEEEEETTBCCHHHHHHHHT T ss_pred CEEEEEECCCCCHHHHHHHCCCCCCEEEEEEECHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH T ss_conf 72899952886606776624568878999544055415656289999999999854442576323678768889988750 Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHC Q ss_conf 2333332222222-222222344211346510012456543221222222223333221035676510121034554311 Q gi|254781101|r 241 ALGIKTIYSFGKS-KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 (472) Q Consensus 241 ~~~~~~i~~~g~~-~~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~ 319 (472) . ..+++|+.. +++|+++.++....++..|.+..+++.+++.++++|+||++|+++|++++..+|++.++|.++|.+ T Consensus 233 ~---~~~~~~~~~~~~~d~~~~~~~~~~~~~~f~l~~~~~~~~~~~~l~G~hnv~NalaAia~~~~lg~~~~~i~~~l~~ 309 (452) T 1gg4_A 233 S---RKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATLDAIKAGLAN 309 (452) T ss_dssp T---SEEEEECSSCTTCSBEEEEEEECSSSEEEEEEETTEEEEEEECSSSTHHHHHHHHHHHHHHHTTCCHHHHHHHHTT T ss_pred C---CCCEEECCCCCCCCEEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 4---6631544666577567774377079718999954614899972577321140899986665549989999999874 Q ss_pred CCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHC Q ss_conf 47664433101000365311331000256532101257778741110268713885123541710589999999999864 Q gi|254781101|r 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 (472) Q Consensus 320 ~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~ 399 (472) |++++||++... ..++.++|||+||+||+||+++|+++++++ +||++|+|+|.|+|+++...|+++++.+.+. T Consensus 310 ~~~v~~R~~~~~---~~~~~~~idD~y~~np~s~~a~l~~l~~~~----~~ki~i~g~~~elG~~~~~~~~~i~~~~~~~ 382 (452) T 1gg4_A 310 LKAVPGRLFPIQ---LAENQLLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAA 382 (452) T ss_dssp CCCCTTSSEEEE---EETTEEEEECCSCCCHHHHHHHHHHHHHSS----SEEEEEECCCCCCTTHHHHHHHHHHHHHHHH T ss_pred CCCCCCHHEEEE---ECCCCEEEEECCCCCHHHHHHHHHHHHHCC----CCEEEEEEECCCCCCHHHHHHHHHHHHHHHC T ss_conf 459983115898---428957998247689799999999998668----9839999976878864799999999999857 Q ss_pred CCCEEEEECCCHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCC--EEEEECCCHHHHHHHHHHHHHHC Q ss_conf 9989999880389899851137979997898999999998447898--99997713254899999999850 Q gi|254781101|r 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEEF 468 (472) Q Consensus 400 ~~d~v~~~G~~~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~~~~gd--iVLiKGSr~~~le~iv~~L~~~~ 468 (472) ++|.|+++|+..+.+.+... ...++++.++++..+.+.+.++| +||+||||+++||+++++|+|.+ T Consensus 383 ~~d~vi~~G~~~~~i~~~~~---~~~~~~~~~~~i~~l~~~~~~~d~~~iL~KGSr~~~le~~v~~L~~~~ 450 (452) T 1gg4_A 383 GIDRVLSVGKQSHAISTASG---VGEHFADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRALQENG 450 (452) T ss_dssp TCSEEEEESSSTHHHHHHTT---SCEEESSHHHHHHHHHHHHHHCSSEEEEEECCGGGTTHHHHHHHC--- T ss_pred CCCEEEEECCCHHHHHHHCC---CCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCC T ss_conf 99999997828899986478---870638999999999985336995699991418515999999998628 |
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase, MURF protein...; HET: 1LG; 2.50A {Streptococcus pneumoniae R6} PDB: 2am2_A* | Back alignment and structure |
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Probab=100.00 E-value=0 Score=708.05 Aligned_cols=444 Identities=29% Similarity=0.417 Sum_probs=384.7 Q ss_pred CCCCCCHHHHHHHHCCEE-ECCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCC Q ss_conf 954356788998727999-5268871474677402223789888971688747688899999869889998552124554 Q gi|254781101|r 1 MNPLWTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79 (472) Q Consensus 1 m~~~~~~~~l~~~~~g~~-~~~~~~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~ 79 (472) |+ | ++.||+++++|+. +...+|..|++|++|||+|+||++|||++|++ |||+||++|+++||+++|++++. T Consensus 1 m~-~-~l~~i~~~~~~~~~~~~~~d~~i~~i~~dSr~v~~g~lFva~kG~~-dG~~yi~~A~~~GA~~vv~~~~~----- 72 (454) T 2am1_A 1 MK-L-TIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFENGAAVTLSEKEV----- 72 (454) T ss_dssp CC-C-BHHHHHHHHTCSSCSTTSCCCBCCCEESCGGGCCTTCEECCCBSSS-BGGGGHHHHHHHTCSEEEESSCC----- T ss_pred CC-C-CHHHHHHHHCCCCCCCCCCCCEECEEEEECCCCCCCCEEEEECCCC-HHHHHHHHHHHCCCEEEEECCCC----- T ss_conf 95-6-2999999868866677677831665995087279998899947884-07999999998799899988747----- Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCC Q ss_conf 46972899599899999999999830699399983036542012334677775201122212211014574100012322 Q gi|254781101|r 80 SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159 (472) Q Consensus 80 ~~~~~~i~v~d~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~ 159 (472) .++|+|.|+|+++||+.||+++|.+++.++||||||||||||++|++++|+..+.++.++||+|+.+|+|++++.++++ T Consensus 73 -~~~p~i~V~d~~~al~~la~~~~~~~~~~vIgVTGTnGKTTt~~~l~~iL~~~~~~~~~~gn~~~~~g~~~~~~~~~~~ 151 (454) T 2am1_A 73 -SNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEG 151 (454) T ss_dssp -CSSCEEECSCHHHHHHHHHHHHHHHHCCEEEEEECCCSSSCHHHHHHHHHTTTSCEEECCTTCCSTTHHHHHHHTCCTT T ss_pred -CCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHHCCCC T ss_conf -8999999898999999999999708898589994258877320278998776167333168768776737888734221 Q ss_pred CHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHC Q ss_conf 14443015664433211212232322025553121012344457888865433103762210121013424689987520 Q gi|254781101|r 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239 (472) Q Consensus 160 ~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~ 239 (472) ++++|+|+|++++|++..++.+++|+++|||||++||||+|+|+|+|+++|++||+.+++++.++.|. |+........ T Consensus 152 ~~~~v~E~~~~~~~~~~~l~~~~~p~iaviTNI~~dHld~~~s~e~y~~~K~~lf~~~~~~~~vi~~d-d~~~~~~~~~- 229 (454) T 2am1_A 152 TEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPA-DPIVEDYLPI- 229 (454) T ss_dssp CCEEEEECCCSSTTHHHHHHHHHCCSEEEECCCCCSSCTTCCCHHHHHHHHGGGGTTCCTTCEEEEES-CGGGGGGCCS- T ss_pred HHHHHHHHHCCCCHHHHHHHCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEECCC-CHHHHHHHHH- T ss_conf 03678886035421378872567996899908866765541006899998888873467545220267-7899998753- Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHC Q ss_conf 12333332222222222222344211346510012456543221222222223333221035676510121034554311 Q gi|254781101|r 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319 (472) Q Consensus 240 ~~~~~~~i~~~g~~~~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~ 319 (472) . ....+++ ...++......... ..+.+........+.++++|.||++|+++|++++..+|++.+.+.++|.+ T Consensus 230 ---~-~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~G~~nv~N~laAia~~~~lg~~~~~i~~~l~~ 301 (454) T 2am1_A 230 ---D-KKVVRFG--QGAELEITDLVERK--DSLTFKANFLEQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQH 301 (454) T ss_dssp ---S-SEEEEES--TTSSBCEEEEEECS--SCEEEEETTCSSEEEESSCCHHHHHHHHHHHHHHHHTTCCHHHHHHHGGG T ss_pred ---C-CCCCCCC--CCCCEEHHHHHHCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHEEECCCC T ss_conf ---0-2332004--56420013322034--55421245432343335566789999999999998733531221200124 Q ss_pred CCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHC Q ss_conf 47664433101000365311331000256532101257778741110268713885123541710589999999999864 Q gi|254781101|r 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399 (472) Q Consensus 320 ~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~ 399 (472) |++++||++... ..++.++|||||||||+||+++|++++.++....+|+|+|+|+|.|||++++++|+++++.++.. T Consensus 302 ~~~~~~R~e~~~---~~~~~~iidDsya~nP~s~~~aL~~l~~~~~~~~gr~I~VlG~m~e~G~~~~~~h~~i~~~ia~~ 378 (454) T 2am1_A 302 LELTRNRTEWKK---AANGADILSDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPD 378 (454) T ss_dssp CCCCCCCSCEEC---CTTTCEEEEECSCCSHHHHHHHHHHHTTSCCCSSCEEEEEEECCCCCCTTHHHHHHHGGGGCCTT T ss_pred CCCCCCCCEEEE---CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHCCCHHHHHHHHHHHHHHHC T ss_conf 566553001687---37992686562369999999999999863320378669997862001535899999999999982 Q ss_pred CCCEEEEECCCHHHHHHHCCC---CCCEE------EECCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHH Q ss_conf 998999988038989985113---79799------97898999999998447898999977132548999999998 Q gi|254781101|r 400 NISHVWLSGFHVLALKDALPR---SIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 (472) Q Consensus 400 ~~d~v~~~G~~~~~~~~~~~~---~~~~~------~~~~~e~a~~~l~~~~~~gdiVLiKGSr~~~le~iv~~L~~ 466 (472) .+|.|+++|++...+.+.... ..... .+++++++++.+.+.+++||+|||||||+++||++++.|++ T Consensus 379 ~~d~vi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~gDvVLiKGSr~~~le~iv~~Lkn 454 (454) T 2am1_A 379 VLDIVIFYGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLEN 454 (454) T ss_dssp TCSEEEEEESTTHHHHHHHHHHSCTTCEEEEEBSSSCBTHHHHHHHHHHHCCTTEEEEEESSCCHHHHHHHHHHHC T ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHCC T ss_conf 9989999798889999999862243541145530212789999999996379999899983754009999998449 |
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 | Back alignment and structure |
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Probab=100.00 E-value=0 Score=587.64 Aligned_cols=430 Identities=18% Similarity=0.190 Sum_probs=344.4 Q ss_pred CHHHHHHHHCCEEECCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCC----CCCC Q ss_conf 678899872799952688714746774022237898889716887476888999998698899985521245----5446 Q gi|254781101|r 6 TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS----IGSL 81 (472) Q Consensus 6 ~~~~l~~~~~g~~~~~~~~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~----~~~~ 81 (472) +|+||+.. |..+.++..|++|++|||+|+||++||||+|+++|||+|+++|+++||+++|++++.... .... T Consensus 4 ~l~~ll~~----~~~~~~~~~i~~i~~DSR~v~~g~lFval~G~~~DGh~fi~~A~~~GA~~vv~~~~~~~~~~~~~~~~ 79 (498) T 1e8c_A 4 NLRDLLAP----WVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMH 79 (498) T ss_dssp BHHHHHTT----TCTTCCCCBCCCEESCGGGCCTTCEEEECBCSSCBGGGGHHHHHHTTCSEEEEECTTTCCTTCEEEET T ss_pred CHHHHHHH----HCCCCCCCEECCEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCC T ss_conf 78999677----52899887379278506758999789990468888899999999879969998075334541010037 Q ss_pred CCCEEEECCHHHHHHHHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCC--------- Q ss_conf 972899599899999999999830--699399983036542012334677775201122212211014574--------- Q gi|254781101|r 82 SIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP--------- 150 (472) Q Consensus 82 ~~~~i~v~d~~~al~~la~~~~~~--~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvp--------- 150 (472) ++|++.|+|++++|++||++++.+ .++++||||||||||||++|++++|+..+.++++.|++++.++.+ T Consensus 80 ~~~~i~V~d~~~aL~~la~~~~~~~~~~~~vIgITGSnGKTTT~~~l~~iL~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 159 (498) T 1e8c_A 80 GVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTG 159 (498) T ss_dssp TEEEEEETTHHHHHHHHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTEEEETTCCBCCSSSSC T ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEECCHHHHHHCCCCCEECCCEECCCCCCCCCCCCCCC T ss_conf 98589989999999999999855733367189997899980006460004554375300025400134752245578787 Q ss_pred -----CHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH Q ss_conf -----100012322144430156644332112122323220255531210123444578888654331037622101210 Q gi|254781101|r 151 -----LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225 (472) Q Consensus 151 -----ltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~Vi 225 (472) +++++...+.++.++|++++++|+|.+++.+++|+++|||||++||+++||++|+|+++|.+++.. .+.+.+|+ T Consensus 160 ~~~~~~~~l~~~~~~~~~~~~~e~s~~g~~~~~~~~~~p~iaviTNI~~dHl~~~gs~e~~~~aK~~i~~~-~~~g~~vl 238 (498) T 1e8c_A 160 SAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAII 238 (498) T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCHHHHHTTTTTTCBCSEEEECCCCSCCHHHHSSHHHHHHHHHHHHHT-SBCCEEEE T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCEEEEECCCHHHCCCCCCHHHHHHHHHHHHHH-CCCCEEEE T ss_conf 35678999999885699299990698364556407688888999489778767568836767788886530-36772899 Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH Q ss_conf 1342468998752012333332222222---2222223442113465100124565432212222222233332210356 Q gi|254781101|r 226 NYDDSFFELLKAKSHALGIKTIYSFGKS---KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302 (472) Q Consensus 226 N~Dd~~~~~l~~~~~~~~~~~i~~~g~~---~~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~ 302 (472) |.||++...+..+....... ....+.+ ...++....+........+.+...++..++.++++|.||++|+++|+++ T Consensus 239 n~Dd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~hnv~NalaAia~ 317 (498) T 1e8c_A 239 NADDEVGRRWLAKLPDAVAV-SMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALAT 317 (498) T ss_dssp ETTSHHHHHHHTTCTTCEEE-ESSSCCCTTTCSEEEEEEEEEECSSCEEEEEEETTCCEEEEECSCSHHHHHHHHHHHHH T ss_pred ECCCHHHHHHHHHCCCCEEE-EECCCCCCCCCCCCEEEEEEEECCCCCEEEECCCCCCEEEEEEECCCHHHHHHHHHHHH T ss_conf 35867887777650462588-63145675433420000246522665201100467643688751273799999999999 Q ss_pred HHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCC Q ss_conf 76510121034554311476644331010003653113310002565321012577787411102687138851235417 Q gi|254781101|r 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382 (472) Q Consensus 303 ~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG 382 (472) +..+|++.+++.+++.+|.+++||++.+.. .++..++|| |||||.||+++++++.... .+|+++|+|.|++.+ T Consensus 318 a~~lg~~~~~i~~~l~~~~~~~gR~e~~~~---~~~~~iidD-y~~np~s~~a~l~~l~~~~---~~rii~v~g~~g~~~ 390 (498) T 1e8c_A 318 LLALGYPLADLLKTAARLQPVCGRMEVFTA---PGKPTVVVD-YAHTPDALEKALQAARLHC---AGKLWCVFGCGGDRD 390 (498) T ss_dssp HHHTTCCHHHHHHHGGGCCCCTTSSEEECC---TTSCEEEEE-CCCSHHHHHHHHHHHHHTC---SSCEEEEECCCSSSC T ss_pred HHHHCCCHHHHHHHHHHCCCCCCCEEEEEE---CCCEEEEEE-CCCCHHHHHHHHHHHHHHC---CCCEEEEECCCCCCC T ss_conf 976221258999999745898997289993---895499994-2799299999999988656---998899988766665 Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEE-----CCCHHHHHH----HCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECC Q ss_conf 1058999999999986499899998-----803898998----511379799978989999999984478989999771 Q gi|254781101|r 383 ELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452 (472) Q Consensus 383 ~~~~~~h~~i~~~~~~~~~d~v~~~-----G~~~~~~~~----~~~~~~~~~~~~~~e~a~~~l~~~~~~gdiVLiKGS 452 (472) ......+. +.+.. ..|.|++. |+....+.+ ...+..++.++++.++|++.+.+.+++||+||++|- T Consensus 391 ~~~~~~~~---~~a~~-~~d~vilt~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~d~~eAi~~a~~~a~~gDvVLi~G~ 465 (498) T 1e8c_A 391 KGKRPLMG---AIAEE-FADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGK 465 (498) T ss_dssp STHHHHHH---HHHHH-HCSEEEECCSCCBTSCHHHHHHHHHTTSSCGGGSEECSCHHHHHHHHHHHSCTTCEEEEESC T ss_pred CCHHHHHH---HHHHH-CCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECC T ss_conf 21558999---99985-59999999878787798999999985676778879968999999999984899899999478 |
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, cytoplasm; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=530.45 Aligned_cols=430 Identities=18% Similarity=0.231 Sum_probs=328.6 Q ss_pred CCCCHHHHHHHHCCEEECC------CCCCEEEEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCC Q ss_conf 4356788998727999526------8871474677402223789888971688747688899999869889998552124 Q gi|254781101|r 3 PLWTFHDLLQAIQGHSIGI------VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76 (472) Q Consensus 3 ~~~~~~~l~~~~~g~~~~~------~~~~~i~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~ 76 (472) |+ .+.+|++.+++.+..+ .+|..|+||++|||+|+||+|||||+|+++|||+|+.+|+++||+++|++..... T Consensus 33 ~~-~l~~~~~~~~~~~~~~~~~~~~~~d~~v~gis~dSR~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~vl~~~~~~~ 111 (535) T 2wtz_A 33 GV-RLAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDPAGVA 111 (535) T ss_dssp CC-BHHHHHHHHTCEESSCC--CCSTTTCBCCEEESCGGGCCTTEEEEECBCSSCBGGGGHHHHHHTTCCEEEECHHHHH T ss_pred CC-CHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCC T ss_conf 84-79999998376223687666789997066899607747999889990348789899999999869989998674310 Q ss_pred -CCCCCCCCEEEECCHHHHHHHHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCC---C Q ss_conf -55446972899599899999999999830--69939998303654201233467777520112221221101457---4 Q gi|254781101|r 77 -SIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV---P 150 (472) Q Consensus 77 -~~~~~~~~~i~v~d~~~al~~la~~~~~~--~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGv---p 150 (472) .....++|+|.|+|++++|++||+++|.+ .+.++||||||||||||++|++++|+..|.++.+.+|+|+..+. + T Consensus 112 ~~~~~~~~p~i~v~d~~~aL~~la~~~~~~p~~~l~vI~VTGTnGKTTT~~~l~~iL~~~G~~~~~~~s~~~~~~~~~~~ 191 (535) T 2wtz_A 112 EIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLP 191 (535) T ss_dssp HHCSCCSSCEEECSSSHHHHHHHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEESSSCEEETTEEEC T ss_pred CCCCCCCCEEEEECCHHHHHHHHHHHHHCCHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCC T ss_conf 01466786099989899999999999864810078199996999889999999999985397401247731230375115 Q ss_pred CHHCC-------------CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 10001-------------23221444301566443321121223232202555312101234445788886543310376 Q gi|254781101|r 151 LTLAR-------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217 (472) Q Consensus 151 ltll~-------------~~~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l 217 (472) ..+.. .+.+....++|++. .+........+.|+++++|||+.+|+++|+++|+|+.+|.+||+.. T Consensus 192 ~~~t~~~~~~l~~~~~~~~e~g~~~~~~e~~~--~~~~~~r~~~~~~~v~vitni~~~Hl~~~~~~e~~~~~K~~lf~~~ 269 (535) T 2wtz_A 192 SALTTPEAPTLQAMLAAMVERGVDTVVMEVSS--HALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPD 269 (535) T ss_dssp CSSSSCCHHHHHHHHHHHHHTTCCEEEEECCH--HHHHTTTTTTCCEEEEEECCCCSCCTTTSSSHHHHHHHHHTTTCTT T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECH--HHHHHCCCCCCCCEEEEEECCCHHHHHHCCCHHHHHHHHHHHHHCC T ss_conf 56788541566766666650698658997121--1677524333564089996562788652375676544433211002 Q ss_pred C--CCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC-CCCCCCCCCCCCCCCCCCCC Q ss_conf 2--2101210134246899875201233333222222222222234421134-651001-24565432212222222233 Q gi|254781101|r 218 E--KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWME-VQLQGKSMEVVHHGIGYHMA 293 (472) Q Consensus 218 ~--~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~~~~-~~~~~~-~~~~~~~~~~~l~~~G~hnv 293 (472) . ..+.+|+|.||+....+....... ...++.....+++..+..... .+..+. ....+..+++.++++|.||+ T Consensus 270 ~~~~~~~~v~n~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~l~G~hnv 345 (535) T 2wtz_A 270 SALRARTAVVCIDDDAGRAMAARAADA----ITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNV 345 (535) T ss_dssp STTCCSEEEEECSSHHHHHHHHHHSSC----EEEESSSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEEEESCCSHHHH T ss_pred CCCCCCEEEEECCHHHHHHHHHHCCCC----CEEECCCCCCHHHHHHHCCCCCCCCEEECCCCCCCCEEEEECCCCCHHH T ss_conf 444575389925508899997630344----1122146630023332022235761122035543102443225672157 Q ss_pred CCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEE Q ss_conf 33221035676510121034554311476644331010003653113310002565321012577787411102687138 Q gi|254781101|r 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373 (472) Q Consensus 294 ~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~ 373 (472) +|+++|++++..+|++.++|.++|.+|+ ++||++++. ..++..++ |+||+||+++.+++.++.. ..+|+++ T Consensus 346 ~NalaAia~a~~lgi~~~~i~~~L~~~~-~~gR~e~i~---~~~~~~i~-~dya~np~~~~~~l~~~~~----~~~r~~~ 416 (535) T 2wtz_A 346 ANCLVALAILDTVGVSPEQAVPGLREIR-VPGRLEQID---RGQGFLAL-VDYAHKPEALRSVLTTLAH----PDRRLAV 416 (535) T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTTCC-CTTSSEECC---SSCSSEEE-EECCCSHHHHHHHHHTTCC----SSSCEEE T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHCC-CCCCEEEEE---ECCCCEEE-EECCCCHHHHHHHHHHHHH----HCCCCEE T ss_conf 7799999999874999999999998699-867389998---51896899-9679996999999999764----1599679 Q ss_pred EECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECC-----CHHHH----HHHCC---CCCCEEEECCHHHHHHHHHHHC Q ss_conf 851235417105899999999998649989999880-----38989----98511---3797999789899999999844 Q gi|254781101|r 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-----HVLAL----KDALP---RSIHVHYSETMDGLFLFIQSSL 441 (472) Q Consensus 374 VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~-----~~~~~----~~~~~---~~~~~~~~~~~e~a~~~l~~~~ 441 (472) |+|.| |++....|.++++.+... .|.|++.++ ....+ ..... ...++.+++++++|++.+.+.+ T Consensus 417 Vlg~~---gd~~~~~~~~~~~~a~~~-ad~vi~t~~~pr~e~~~~i~~~i~~~~~~~~~~~~v~~~~d~~eAi~~a~~~a 492 (535) T 2wtz_A 417 VFGAG---GDRDPGKRAPMGRIAAQL-ADLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWA 492 (535) T ss_dssp EECCC---TTSCGGGHHHHHHHHHHH-CSEEEECCSCCTTSCHHHHHHHHHHHHTTCC-CCEEEECCSHHHHHHHHHHHC T ss_pred EECCC---CCCCHHHHHHHHHHHHHC-CCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHC T ss_conf 97877---887577899999999962-99999998776757989999999987897479988899599999999999838 Q ss_pred CCCCEEEEECC Q ss_conf 78989999771 Q gi|254781101|r 442 VDGDVVVVKSS 452 (472) Q Consensus 442 ~~gdiVLiKGS 452 (472) ++||+|||||+ T Consensus 493 ~~gDvVLv~G~ 503 (535) T 2wtz_A 493 RPGDVVLIAGK 503 (535) T ss_dssp CTTCEEEEESC T ss_pred CCCCEEEECCC T ss_conf 99999998378 |
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=447.34 Aligned_cols=404 Identities=19% Similarity=0.206 Sum_probs=307.9 Q ss_pred EEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEC------CHH-HHHHHH-- Q ss_conf 46774022237898889716887476888999998698899985521245544697289959------989-999999-- Q gi|254781101|r 28 NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD------DVL-GALNKL-- 98 (472) Q Consensus 28 ~~i~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~~~i~v~------d~~-~al~~l-- 98 (472) +|.+.-.--.+.|..|++..+..+|+|.+++.+.++|+.+++...+. .....++.++++. ++. ++..+. T Consensus 20 sG~s~a~~l~~~G~~v~~~d~~~~~~~~~~~~l~~~G~~~~~~~~~~--~~~~~~~~~vv~Sp~I~~~~p~l~~a~~~~i 97 (451) T 3lk7_A 20 SGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPL--ELLDEDFCYMIKNPGIPYNNPMVKKALEKQI 97 (451) T ss_dssp THHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCG--GGGGSCEEEEEECTTSCTTSHHHHHHHHTTC T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCEEEECCCHH--HCCCCCCCEEEECCCCCCCCHHHHHHHHCCC T ss_conf 99999999997889799997987889978999997899899688978--8177998599989974999999999997799 Q ss_pred -----HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCH-HCCCCCCCHHHHHCCCCCCC Q ss_conf -----999983069939998303654201233467777520112221221101457410-00123221444301566443 Q gi|254781101|r 99 -----AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHL 172 (472) Q Consensus 99 -----a~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvplt-ll~~~~~~~~~V~E~g~~~~ 172 (472) +.+++...+.++||||||||||||++|++++|+..+......|| +|+|.+ +.....+.+++|+|+|..+. T Consensus 98 ~~~~~~~l~~~~~~~~vIgVTGT~GKTTt~~~l~~iL~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~E~s~~~~ 173 (451) T 3lk7_A 98 PVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGN----IGFPASEVVQAANDKDTLVMELSSFQL 173 (451) T ss_dssp CEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEEET----SSSCHHHHTTTCCTTCEEEEECCHHHH T ss_pred CEEEHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEECCC----CCCCCHHHHHCCCCCCEEEEEECCCCC T ss_conf 7960999999874086899977778621899999998643344123046----676705442135898789999433210 Q ss_pred CCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCC Q ss_conf 32112122323220255531210123444578888654331037622101210134246899875201233333222222 Q gi|254781101|r 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252 (472) Q Consensus 173 gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~ 252 (472) +++ ..++|+++|||||++||||+|+|+|+|+++|.++++++++++.+|+|.||++...+...... .+++|+. T Consensus 174 ~~~----~~~~p~iaviTNI~~dHld~~~s~e~y~~aK~~l~~~~~~~~~~v~n~dd~~~~~l~~~~~~----~~~~~~~ 245 (451) T 3lk7_A 174 MGV----KEFRPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVLNFNQGISKELAKTTKA----TIVPFST 245 (451) T ss_dssp TTC----SSCCCSEEEECCCCSCCHHHHSSHHHHHHHHHGGGTTCCTTSEEEEETTSHHHHHHHTTCSS----EEEEEES T ss_pred CCC----CCCCCCEEEEECCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCC----CEEEECC T ss_conf 455----44598699850717776372069889877755343146665653334675899999874177----3898447 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEE Q ss_conf 22222223442113465100124565432212222222233332210356765101210345543114766443310100 Q gi|254781101|r 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332 (472) Q Consensus 253 ~~~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~ 332 (472) +.+++...... . .+............++++|.||++|+++|++++..+|++.++|.++|++|++++||||.+. T Consensus 246 ~~~~~~~~~~~----~--~~~~~~~~~~~~~~l~l~G~hnv~NalaA~a~a~~lGi~~~~i~~~L~~f~~~~gR~e~i~- 318 (451) T 3lk7_A 246 TEKVDGAYVQD----K--QLFYKGENIMSVDDIGVPGSHNVENALATIAVAKLAGISNQVIRETLSNFGGVKHRLQSLG- 318 (451) T ss_dssp SSCCSSEEEET----T--EEEETTEEEEEGGGSSSCSHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHCCCCTTSSEEEE- T ss_pred CCCCCCCEEEC----E--EEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHEEEE- T ss_conf 64556324303----0--8997571367652247764445660899999999869999999999985666501315774- Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHH Q ss_conf 03653113310002565321012577787411102687138851235417105899999999998649989999880389 Q gi|254781101|r 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412 (472) Q Consensus 333 ~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~ 412 (472) ..+++++|||+||+||.|+.+||+.+.. ++++++++|.+.|.+..+++.. +. +++.++++|+... T Consensus 319 --~~~g~~iidD~~~~~~~s~~~al~~~~~-------~~ii~i~gg~~~~~~~~~l~~~----~~--~~~~~ii~g~~~~ 383 (451) T 3lk7_A 319 --KVHGISFYNDSKSTNILATQKALSGFDN-------TKVILIAGGLDRGNEFDELIPD----IT--GLKHMVVLGESAS 383 (451) T ss_dssp --EETTEEEEECTTCCSHHHHHHHHHTSCG-------GGEEEEECCSCCSCCCGGGHHH----HT--TCSEEEECSTTHH T ss_pred --CCCCEEEEECCCCHHHHHHHHHHHHCCC-------CCEEEECCCCCCCCCHHHHHHH----HH--CCCEEEEECCCHH T ss_conf --1388699956774169999999974778-------8728980785566659999999----86--6988999799989 Q ss_pred HHHHHCCC-CCCEEEECCHHHHHHHHHHHCCCCCEEEEECC------------CHHHHHHHHHHHHHH Q ss_conf 89985113-79799978989999999984478989999771------------325489999999985 Q gi|254781101|r 413 ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS------------NSCGFYRLINLLLEE 467 (472) Q Consensus 413 ~~~~~~~~-~~~~~~~~~~e~a~~~l~~~~~~gdiVLiKGS------------r~~~le~iv~~L~~~ 467 (472) .+.+.+.. +..+..+.++++|++.+.+.+++||+||++|+ ||..|+++|+.|+.| T Consensus 384 ~i~~~~~~~~~~~~~~~d~~eAi~~a~~~~~~gDiVLls~a~aSfD~f~nye~RG~~F~~~v~~l~~e 451 (451) T 3lk7_A 384 RVKRAAQKAGVTYSDALDVRDAVHKAYEVAQQGDVILLSPANASWDMYKNFEVRGDEFIDTFESLRGE 451 (451) T ss_dssp HHHHHHHHTTCCEEECSSHHHHHHHHHHHCCTTCEEEECCSSCSTTTSSSHHHHHHHHHHHHHHHHCC T ss_pred HHHHHHHHCCCCEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHCCHHHHHHHHHHHHHHHCCC T ss_conf 99999986699689749999999999985899799997795504212249999999999999985289 |
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2jfg_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=393.79 Aligned_cols=385 Identities=21% Similarity=0.240 Sum_probs=271.4 Q ss_pred EEECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCC------CCCCCCCCEEEECCHHHHHHHHHHHHHH Q ss_conf 7402223789888971688747688899999869889998552124------5544697289959989999999999983 Q gi|254781101|r 31 SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA------SIGSLSIPVFGVDDVLGALNKLAVAARL 104 (472) Q Consensus 31 ~~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~------~~~~~~~~~i~v~d~~~al~~la~~~~~ 104 (472) .+|.|...+..-++...+....|+.. ++. -+++.++|++--... .....++|++. +. ++ +.. T Consensus 33 ~~D~~~~~~~~~~l~~~~~~~~~~~~-~~~-~~~~d~vV~SpgI~~~~p~l~~a~~~~i~i~~--~~-----el---~~~ 100 (439) T 2x5o_A 33 VMDTRMTPPGLDKLPEAVERHTGSLN-DEW-LMAADLIVASPGIALAHPSLSAAADAGIEIVG--DI-----EL---FCR 100 (439) T ss_dssp EEESSSSCTTGGGSCTTSCEEESSCC-HHH-HHTCSEEEECTTSCTTCHHHHHHHHTTCEEEC--HH-----HH---HHH T ss_pred EEECCCCCCHHHHHHHCCCEEECCCC-HHH-CCCCCEEEECCCCCCCCHHHHHHHHCCCCEEE--HH-----HH---HHH T ss_conf 99798992158999848987636879-778-58998999899139999999999985992874--68-----88---876 Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 06993999830365420123346777752011222122110145741000123221444301566443321121223232 Q gi|254781101|r 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184 (472) Q Consensus 105 ~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P 184 (472) ..+.++||||||||||||++|++++|+..+......|| +|+|.... ..++.+++|+|++..+.+. ...++| T Consensus 101 ~~~~~~IaVTGT~GKTTTt~~l~~iL~~~~~~~~~~g~----~g~~~~~~-~~~~~~~~vve~~~~~~~~----~~~~~p 171 (439) T 2x5o_A 101 EAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGN----IGLPALML-LDDECELYVLELSSFQLET----TSSLQA 171 (439) T ss_dssp HCCSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEEES----SSBCHHHH-CCTTCCEEEEECCHHHHHT----CCCCCC T ss_pred HCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEECCC----CCCCCCCC-CCCCCCEEEEECCCCCCCC----CCCCCC T ss_conf 35676899878998447999999998763865011355----46730103-3578878999900355345----544476 Q ss_pred CEEEEEEECCCHHHHHHHH-HHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 2025553121012344457-888865433103762210121013424689987520123333322222222222223442 Q gi|254781101|r 185 HIAVITTIAPAHLSNFSGI-EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263 (472) Q Consensus 185 ~iaiiTNI~~dHld~~~s~-e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i 263 (472) +++|||||++||||+|+++ |+|..+|.+++++ .+.+|+|.||+....+.. ....+++||.+..... + T Consensus 172 ~iavitNi~~dHld~~~~~~e~y~~~k~~i~~~---~~~~v~n~dd~~~~~~~~-----~~~~~~~~g~~~~~~~----~ 239 (439) T 2x5o_A 172 VAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKVCVVNADDALTMPIRG-----ADERCVSFGVNMGDYH----L 239 (439) T ss_dssp SEEEECCCCSCCGGGCTTHHHHHHHHHHGGGTT---CSEEEEETTCGGGSCSCC-----CSSCCEEECSSSSSEE----E T ss_pred CCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCC---CCEEEECCCHHHHHHHHH-----CCCCEEEEECCCCCCC----C T ss_conf 500102655410353111479999998653036---733664351488999874-----3674467502444332----0 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEE Q ss_conf 11346510012456543221222222223333221035676510121034554311476644331010003653113310 Q gi|254781101|r 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343 (472) Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iID 343 (472) ........+.+..+.....+.++++|.||++|+++|++++..+|+++++|.++|++|++++||+|.+. ..+++++|| T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~~~~lGi~~~~i~~~L~~f~gv~~R~e~~~---~~~g~~~id 316 (439) T 2x5o_A 240 NHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVL---EHNGVRWIN 316 (439) T ss_dssp EEETTEEEEEETTEEEEEGGGCSCCSHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCCCCTTSSEEEE---EETTEEEEE T ss_pred CCCCCCEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEE---EECCEEEEE T ss_conf 00366159983585122222115566055777877999999839969999999975779744268999---509989999 Q ss_pred ECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCC Q ss_conf 00256532101257778741110268713885123541710589999999999864998999988038989985113797 Q gi|254781101|r 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423 (472) Q Consensus 344 DsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~~~~~~~~~~~~~~~ 423 (472) |+||+||+||.++|++++... +..+++| |......|+++++.+.. .++.|+++|++...+.+.... . T Consensus 317 D~~a~np~a~~~al~~~~~~~-----~~~~i~~-----g~~~~~~~~~l~~~~~~-~~~~v~~~G~~~~~i~~~~~~--~ 383 (439) T 2x5o_A 317 DSKATNVGSTEAALNGLHVDG-----TLHLLLG-----GDGKSADFSPLARYLNG-DNVRLYCFGRDGAQLAALRPE--V 383 (439) T ss_dssp CTTCCSHHHHHHHHTTCCCSS-----CEEEEEE-----SBCTTCCCGGGGGGSCS-SSEEEEEESTTHHHHHTTSGG--G T ss_pred ECCCCCHHHHHHHHHHHHHCC-----CCEEEEC-----CCCCCCCHHHHHHHHHC-CCCEEEEECCCHHHHHHHCCC--C T ss_conf 537999899999999666448-----8669974-----78864478999999850-488999989898999853777--7 Q ss_pred EEEECCHHHHHHHHHHHCCCCCEEEEE---CC---------CHHHHHHHHHHH Q ss_conf 999789899999999844789899997---71---------325489999999 Q gi|254781101|r 424 VHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLL 464 (472) Q Consensus 424 ~~~~~~~e~a~~~l~~~~~~gdiVLiK---GS---------r~~~le~iv~~L 464 (472) +.+++++++|++.+.+.+++||+||+. .| ||..|.++|+.| T Consensus 384 ~~~~~~l~eav~~a~~~~~~gDvVLlSP~~aSfd~f~~~~~RG~~F~~~v~~l 436 (439) T 2x5o_A 384 AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFARLAKEL 436 (439) T ss_dssp EEECSSHHHHHHHHGGGCCTTCEEEECCSSBSTTTSSSHHHHHHHHHHHHHHH T ss_pred EEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 17759899999999985899299997974403023279999999999999986 |
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=356.00 Aligned_cols=382 Identities=16% Similarity=0.124 Sum_probs=250.3 Q ss_pred EECCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEE Q ss_conf 40222378988897168874768889999986988999855212455446972899599899999999999830699399 Q gi|254781101|r 32 IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111 (472) Q Consensus 32 ~dSr~v~~g~lFval~g~~~DGh~~i~~A~~~Ga~~~i~~~~~~~~~~~~~~~~i~v~d~~~al~~la~~~~~~~~~~vI 111 (472) .|+..+...|++|-=+|-.. .|..+..|.++|.. ++. + .+. ++.. ....+.++| T Consensus 64 ~~~~~~~~~d~vV~SpgI~~-~~p~l~~a~~~gi~------------------v~~--~-~e~---~~~~-~~~~~~~~I 117 (469) T 1j6u_A 64 HSADNWYDPDLVIKTPAVRD-DNPEIVRARMERVP------------------IEN--R-LHY---FRDT-LKREKKEEF 117 (469) T ss_dssp CCTTSCCCCSEEEECTTCCT-TCHHHHHHHHTTCC------------------EEE--H-HHH---HHHH-HHHHCCCEE T ss_pred CCHHHCCCCCEEEECCCCCC-CCHHHHHHHHCCCC------------------EEE--H-HHH---HHHH-HHHCCCCEE T ss_conf 89788799989998896898-88999999985996------------------871--9-999---9987-764667679 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEE Q ss_conf 98303654201233467777520112221221101457410001232214443015664433211212232322025553 Q gi|254781101|r 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191 (472) Q Consensus 112 ~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTN 191 (472) |||||||||||++|++++|+..+.... ++++.++.++.........+++|+|++..+ .+...++|+++|||| T Consensus 118 aITGTnGKTTTt~ml~~iL~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~-----~~~~~~~p~iavitN 189 (469) T 1j6u_A 118 AVTGTDGKTTTTAMVAHVLKHLRKSPT---VFLGGIMDSLEHGNYEKGNGPVVYELDESE-----EFFSEFSPNYLIITN 189 (469) T ss_dssp EEECSSSHHHHHHHHHHHHHHTTCCCE---EECSSCCTTSTTSSEECCSSCEEEEECTTS-----GGGGGCCCSEEEECC T ss_pred EEECCCCHHHHHHHHHHHHCCCCCCCE---EECCCCCCCCCCHHCCCCCCEEEEECCCCC-----CCCCEECCCEEEEEC T ss_conf 996899614699999998605454541---203765564210000369960799644321-----211000688899806 Q ss_pred ECCCHHHHHH-HHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 1210123444-578888654331037622101210134246899875201233333222222222222234421134651 Q gi|254781101|r 192 IAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270 (472) Q Consensus 192 I~~dHld~~~-s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~~~~~~~ 270 (472) |++||||+|+ +++.|...|..++.+ ....++|.||+....+...... ................... T Consensus 190 I~~DHld~~~~~~~~~~~~~~~i~~~---~~~~~~~~dd~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 256 (469) T 1j6u_A 190 ARGDHLENYGNSLTRYRSAFEKISRN---TDLVVTFAEDELTSHLGDVTFG----------VKKGTYTLEMRSASRAEQK 256 (469) T ss_dssp CCCCCGGGGTTCHHHHHHHHHHHHHT---CSEEEEETTCTTTGGGCSEEEC----------SSSSSEEEEEEEECSSCEE T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHC---CCCEEEECCHHHHHHHHHCCCC----------CCCCCCCCCCCCCCCCCCC T ss_conf 73653244242268899999987516---8811541220556555430222----------2234311122112234540 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCC Q ss_conf 00124565432212222222233332210356765101210345543114766443310100036531133100025653 Q gi|254781101|r 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350 (472) Q Consensus 271 ~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP 350 (472) .+..........+.++++|.||++|+++|+++|..+|++.+.|.++|++|++++||+|.+.. .+..+++|+|| |++|| T Consensus 257 ~~~~~~~~~~~~~~~~l~G~hNv~NalaAia~a~~~Gi~~~~i~~~l~~f~gv~~R~e~v~~-~~~~~i~vidD-YAHnP 334 (469) T 1j6u_A 257 AMVEKNGKRYLELKLKVPGFHNVLNALAVIALFDSLGYDLAPVLEALEEFRGVHRRFSIAFH-DPETNIYVIDD-YAHTP 334 (469) T ss_dssp EEEEETTEEEEEEEESSCSHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCCCCTTSSEEEEE-ETTTTEEEEEE-CCCSH T ss_pred EEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEE-CCCCCCEEEEE-CCCCH T ss_conf 47750586202557720138889889999999998299999999887504787884479986-28888346640-46898 Q ss_pred CCHHHHHHHHHHHHHCCCCCCE-EEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEE-----CC------CHHHHHHHC Q ss_conf 2101257778741110268713-88512354171058999999999986499899998-----80------389899851 Q gi|254781101|r 351 ASMKAAISVLSQISPHGEGRRI-AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GF------HVLALKDAL 418 (472) Q Consensus 351 ~S~~aal~~l~~~~~~~~~r~i-~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~-----G~------~~~~~~~~~ 418 (472) +|++++|++++.+.+ +|++ +|++ +. .+.+..+.+.++.. +. ..+|.|++. +| ..+.+.+.+ T Consensus 335 ~ai~a~l~~l~~~~~---~~~ii~vf~-~~-~~~r~~~~~~~~~~-a~-~~aD~vilt~~~~~~E~~~~~~~~~~i~~~l 407 (469) T 1j6u_A 335 DEIRNLLQTAKEVFE---NEKIVVIFQ-PH-RYSRLEREDGNFAK-AL-QLADEVVVTEVYDAFEEKKNGISGKMIWDSL 407 (469) T ss_dssp HHHHHHHHHHHHHCS---SSEEEEEEC-CB-C--------CHHHH-HH-TTSSEEEECCCBC---------CHHHHHHHH T ss_pred HHHHHHHHHHHHHCC---CCCEEEEEE-CC-CCCCHHHHHHHHHH-HH-HCCCEEEECCCCCCCCCCCCCCCHHHHHHHH T ss_conf 999999999997658---982899997-98-88646777899999-99-7099999999889988754587899999999 Q ss_pred CC-CCCEEEECCHHHHHHHHHHHCCCCCEEEE--ECCCHHHHHHHHHHHHHHCCCC Q ss_conf 13-79799978989999999984478989999--7713254899999999850577 Q gi|254781101|r 419 PR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KSSNSCGFYRLINLLLEEFPAI 471 (472) Q Consensus 419 ~~-~~~~~~~~~~e~a~~~l~~~~~~gdiVLi--KGSr~~~le~iv~~L~~~~~~~ 471 (472) +. +....++++.+++.+.+ .+.+||+||+ |||......++++.+++.+.+. T Consensus 408 ~~~~~~~~~~~~~~~i~~~l--~~~~gDiVL~~GaGdi~~~~~~~~e~~~~~~~~~ 461 (469) T 1j6u_A 408 KSLGKEAYFVEKLPELEKVI--SVSENTVFLFVGAGDIIYSSRRFVERYQSSKSSP 461 (469) T ss_dssp HHTTCCEEECCSGGGHHHHC--CCCSSEEEEEECSSTHHHHHHHHHHHHHHHC--- T ss_pred HHCCCCEEECCCHHHHHHHH--HCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCH T ss_conf 84699859809999999998--5799799999569998999999999999751873 |
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=412.34 Aligned_cols=340 Identities=19% Similarity=0.265 Sum_probs=268.8 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCC-CCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC Q ss_conf 9939998303654201233467777520112-221221101457410001232214443015664433211212232322 Q gi|254781101|r 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 (472) Q Consensus 107 ~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~-~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P~ 185 (472) ..++||||||||||||+.|++++|+..+... ...|| ++.|+......++.+++|+|++.++ +++ .. ++|+ T Consensus 117 ~~~~iaVTGTnGKTTTt~li~~il~~~g~~~~~~~g~----~~~~~~~~~~~~~~~~~V~E~s~~~-~~~---~~-~~p~ 187 (475) T 1p3d_A 117 FRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGG----LVKSAGKNAHLGASRYLIAEADESD-ASF---LH-LQPM 187 (475) T ss_dssp TSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEE----EETTTTEEEECCSSSEEEEECCCTT-SGG---GG-CCCS T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECC----CCCCCCHHCCCCCCCEEEEEECCCH-HHH---HH-CCCC T ss_conf 6525788656787517999999999779997899898----1465410033689872899976344-558---63-5998 Q ss_pred EEEEEEECCCHHHHHH-HHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 0255531210123444-578888654331037622101210134246899875201233333222222222222234421 Q gi|254781101|r 186 IAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 (472) Q Consensus 186 iaiiTNI~~dHld~~~-s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~ 264 (472) ++|||||++||||+|+ ++|+|+.+|.+++++++++|.+|+|.||+....+...... ++++||.+++++++...+. T Consensus 188 iavitNI~~DHlD~~~~~~e~y~~~k~~i~~~~~~~~~~i~n~dd~~~~~~~~~~~~----~~~~fg~~~~~~~~~~~~~ 263 (475) T 1p3d_A 188 VSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMCADDPVLMELVPKVGR----QVITYGFSEQADYRIEDYE 263 (475) T ss_dssp EEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCTTCEEEEETTCHHHHHHHHHHCS----EEEEEESSTTCSEEEEEEE T ss_pred EEEEECCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCC----CEEEECCCCCCCCCCCCCH T ss_conf 899967871242010688999999999999569948889996886788766786378----5799525766552211100 Q ss_pred CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCC-EECCCCCCEEEE Q ss_conf 134651001245-654322122222222333322103567651012103455431147664433101-000365311331 Q gi|254781101|r 265 QCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLI 342 (472) Q Consensus 265 ~~~~~~~~~~~~-~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~-~~~~~~~~~~iI 342 (472) .......+.+.. ......+.++++|.||++|+++|++++..+|++.+.|.++|++|+++++|+++. ++....+++.++ T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalAAiava~~lGi~~e~i~~aL~~f~g~~~R~e~~~ei~~~~~~~~ii 343 (475) T 1p3d_A 264 QTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLV 343 (475) T ss_dssp EETTEEEEEEECTTCCEEEEEESSCSHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTCCCBTTSSEEEEEEEETTEEEEEE T ss_pred HHCCCCCEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCCEEEE T ss_conf 00146520001244420122004675466999999999999849999999976764378753110688999548978999 Q ss_pred EECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEE-----------CCCH Q ss_conf 00025653210125777874111026871388512354171058999999999986499899998-----------8038 Q gi|254781101|r 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHV 411 (472) Q Consensus 343 DDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~-----------G~~~ 411 (472) || |||||+|+++++++++.+. ++|+++++++|.+ +....++|.++++.+. .+|.+++. |... T Consensus 344 DD-ya~~p~si~a~l~al~~~~---~~~~ii~i~~~~~-~~~~~~~~~e~~~~l~--~~d~vil~~i~~a~e~~~~g~~~ 416 (475) T 1p3d_A 344 DD-YGHHPTEVGVTIKAAREGW---GDKRIVMIFQPHR-YSRTRDLFDDFVQVLS--QVDALIMLDVYAAGEAPIVGADS 416 (475) T ss_dssp EE-CCCSHHHHHHHHHHHHHHH---CSSCEEEEECCBC-HHHHHHTHHHHHHHHT--TSSEEEEECCBCTTCCCCTTCSH T ss_pred EC-CCCCHHHHHHHHHHHHHHC---CCCEEEEEECCCC-CCCHHHHHHHHHHHHH--HCCEEEECCCCCCCCCCCCCCCH T ss_conf 76-7889799999999998656---9976999954777-7327899999999998--49999987766776665458489 Q ss_pred HHHHHHCCC--CCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHC Q ss_conf 989985113--797999789899999999844789899997713254899999999850 Q gi|254781101|r 412 LALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468 (472) Q Consensus 412 ~~~~~~~~~--~~~~~~~~~~e~a~~~l~~~~~~gdiVLiKGSr~~~le~iv~~L~~~~ 468 (472) +.+.+.+.. ..+..++++.+++++.+.+.+++||+||+|||++ +.++.+.|.|+| T Consensus 417 ~~i~~~l~~~~~~~~~~~~~~~ea~~~l~~~~~~gDvVL~~GsG~--i~~~~~~l~~~l 473 (475) T 1p3d_A 417 KSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAGS--VSKISRGLAESW 473 (475) T ss_dssp HHHHHHHHHHTSCCCEEESCGGGHHHHHHHHCCTTCEEEEECSST--HHHHHHHHHHHC T ss_pred HHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCC--HHHHHHHHHHHH T ss_conf 999999986089897996999999999998589989999978998--899999999985 |
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=407.60 Aligned_cols=341 Identities=18% Similarity=0.230 Sum_probs=265.1 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC Q ss_conf 69939998303654201233467777520112221221101457410001232214443015664433211212232322 Q gi|254781101|r 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185 (472) Q Consensus 106 ~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~gn~Nn~iGvpltll~~~~~~~~~V~E~g~~~~gei~~L~~i~~P~ 185 (472) ...++||||||||||||++|++++|+..|...... ++-++.|+.......+.+++|+|++.++ ++. .. ++|+ T Consensus 117 ~~~~~iaVTGTnGKTTtt~ml~~iL~~~g~~~~~~---~g~~~~~~~~~~~~~~~~~~V~E~s~~~-~~~---~~-~~p~ 188 (491) T 2f00_A 117 RFRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFV---NGGLVKAAGVHARLGHGRYLIAEADESD-ASF---LH-LQPM 188 (491) T ss_dssp TTSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEE---EEEEETTTTEEEECCSSSEEEEECCCTT-SGG---GG-CCCS T ss_pred HCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEE---ECCCCCCHHHHHCCCCCCEEEEEECCCC-CCH---HC-CCCC T ss_conf 05727999456782329999999999759993799---7164450244202589988999976640-130---11-4898 Q ss_pred EEEEEEECCCHHHHH-HHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 025553121012344-4578888654331037622101210134246899875201233333222222222222234421 Q gi|254781101|r 186 IAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264 (472) Q Consensus 186 iaiiTNI~~dHld~~-~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~ 264 (472) ++|||||++||||+| +|+|+|+++|.++++++++++.+|+|.||+.+..+...... .+++||....++++..++. T Consensus 189 iavitNi~~DHld~~~~~~e~y~~~k~~i~~~~~~~~~~i~n~dd~~~~~~~~~~~~----~v~tfg~~~~~~~~~~~~~ 264 (491) T 2f00_A 189 VAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGR----QTTTYGFSEDADVRVEDYQ 264 (491) T ss_dssp EEEECCCCSCSGGGTTTCHHHHHHHHHHHHTTSCTTCEEEEETTSHHHHHHGGGCCS----EEEEEESSTTCSEEEEEEE T ss_pred EEEEECCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCC----CEEEEECCCCCCEECCCHH T ss_conf 999977866775120688999999999999669958889997988899999875488----6378600111110012211 Q ss_pred CCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEE-----CCCCCC Q ss_conf 1346510012-4565432212222222233332210356765101210345543114766443310100-----036531 Q gi|254781101|r 265 QCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC-----ALNQGF 338 (472) Q Consensus 265 ~~~~~~~~~~-~~~~~~~~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~-----~~~~~~ 338 (472) ....+..+.. ........+.++++|.||++|+++|++++..+|++.+.|.++|.+|+++++|+|.... ....++ T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~l~l~G~HN~~NalAAia~a~~lGi~~e~I~~aL~~F~g~~~R~E~vg~~~~~~~~~~~~ 344 (491) T 2f00_A 265 QIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSG 344 (491) T ss_dssp EETTEEEEEEECTTSCCEEEEESSCSHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTCCCBTTSSEEEEEEESSSSSSCSS T ss_pred HCCCCCCEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEEEEEEEECCCC T ss_conf 12566520110123433122103567201534999999999859957887766540478874148998742123423789 Q ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEE----------- Q ss_conf 133100025653210125777874111026871388512354171058999999999986499899998----------- Q gi|254781101|r 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------- 407 (472) Q Consensus 339 ~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~----------- 407 (472) ..+|+|+||+||+|++++|++++.+.+ .+|+++++| .++|.+...+|.++++.+. .+|.+++. T Consensus 345 ~~~i~DdyahnP~si~a~l~al~~~~~--~~~ii~i~~--~~~~~~~~~~~~e~~~~l~--~aD~vil~~i~~a~e~~~~ 418 (491) T 2f00_A 345 TAMLVDDYGHHPTEVDATIKAARAGWP--DKNLVMLFQ--PHRFTRTRDLYDDFANVLT--QVDTLLMLEVYPAGEAPIP 418 (491) T ss_dssp EEEEEEECCCSHHHHHHHHHHHHTTCC--SSEEEEEEC--CBCHHHHTTTHHHHHHHHT--TSSEEEECCCBCSSSCCCT T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCC--CCEEEEEEC--CCCCCCHHHHHHHHHHHHH--HCCEEEECCCCCCCCCCCC T ss_conf 789998467895899999999996589--976999976--7787247999999999998--6999999666688666445 Q ss_pred CCCHHHHHHHCCCC--CCEEEECCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHH Q ss_conf 80389899851137--979997898999999998447898999977132548999999998 Q gi|254781101|r 408 GFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466 (472) Q Consensus 408 G~~~~~~~~~~~~~--~~~~~~~~~e~a~~~l~~~~~~gdiVLiKGSr~~~le~iv~~L~~ 466 (472) |.....+.+.+... .++.++++.+++++.+.+.+++||+||+|||++ ++++.+.|.| T Consensus 419 g~~~~~l~~~i~~~~~~~~~~~~~~~ea~~~l~~~~~~gDvVL~~Gsg~--i~~~~~~l~e 477 (491) T 2f00_A 419 GADSRSLCRTIRGRGKIDPILVPDPARVAEMLAPVLTGNDLILVQGAGN--IGKIARSLAE 477 (491) T ss_dssp TSSHHHHTTC-------CCEECCCSSCCHHHHGGGCCSEEEEEEECSTT--HHHHHHHHHH T ss_pred CCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCC--HHHHHHHHHH T ss_conf 8599999999985599897997999999999997589989999988998--8899999999 |
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=394.94 Aligned_cols=350 Identities=18% Similarity=0.177 Sum_probs=250.8 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCC-CHH----------HH------HCCCCCCCHHCCCCCCCHHHHHCCCC Q ss_conf 99399983036542012334677775201122-212----------21------10145741000123221444301566 Q gi|254781101|r 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIG----------SY------NNHIGVPLTLARMPVDVDFGIFELGM 169 (472) Q Consensus 107 ~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~-t~g----------n~------Nn~iGvpltll~~~~~~~~~V~E~g~ 169 (472) ..++||||||||||||+.|++++|+..|.... ..| +. +..+|.+..........+|+|+|++. T Consensus 121 ~~~vI~VTGTnGKTTTt~mi~~iL~~~g~~~~~~iGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~E~~e 200 (524) T 3hn7_A 121 SRHVIAVAGTHGKTTTTTMLAWILHYAGIDAGFLIGGVPLVNTTDTNLQQVFAHSSYLGTEKDDSDNSVNTGYFVIEADE 200 (524) T ss_dssp GSEEEEEECSSCHHHHHHHHHHHHHHTTCCCEEECSCCBCCCSSCHHHHHHTTSSEECCCCCCSSCTTCCCCEEEEECCS T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEC T ss_conf 58289997888825389999999997299862997570345776643356778733430134455402468879999844 Q ss_pred CC--CCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCC----- Q ss_conf 44--33211212232322025553121012344457888865433103762210121013424689987520123----- Q gi|254781101|r 170 SH--LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL----- 242 (472) Q Consensus 170 ~~--~gei~~L~~i~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~----- 242 (472) ++ +++.......++|+++|||||++||||+|+|+|+|+++|.++++.++++|.+|+|.||+.+.....+.... T Consensus 201 ~~~s~~~~~~~~~~~~p~iaviTNI~~DHLd~~~s~e~~~~ak~~i~~~~~~~g~~V~n~dd~~~~~~~~~~~~~~~~~~ 280 (524) T 3hn7_A 201 YDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFADLDAIQTQFHHMVRMIPSTGKIIMPAATISLEDTLAKGVWTPIWRT 280 (524) T ss_dssp CCCBTTBCCCHHHHCCCSEEEECCCCCC------CHHHHHHHHHHHHTTSCTTSEEEEESSCHHHHHHHHTCCCSCEEEE T ss_pred CCHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCC T ss_conf 43014552000144467689997477867323330355566777787428878854753404569999998764310343 Q ss_pred ------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHCCC Q ss_conf ------------3333222222222222234421134651001245654-322122222222333322103567651012 Q gi|254781101|r 243 ------------GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309 (472) Q Consensus 243 ------------~~~~i~~~g~~~~ad~~~~~i~~~~~~~~~~~~~~~~-~~~~~l~~~G~hnv~NalaAia~~~~lGi~ 309 (472) ....+.+++....+||++..+........|.+...+. ...+.++++|.||++|+++|+++|..+|++ T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~l~G~hNv~NalaAia~a~~lGi~ 360 (524) T 3hn7_A 281 SVIDSTISSVRREDSPLENSQAENSSDWQAELISADGSQFTVSFNDNKEATALVNWSMSGLHNVNNALVAIAAAYNIGVS 360 (524) T ss_dssp EEEC-------------------CCCSEEEEEEETTTTEEEEEETTEEEEEEEEECSCCSHHHHHHHHHHHHHHHHTTCC T ss_pred CEEECCCCCCCCCCCCEEEECCCCCCEEEEEEEEECCCCEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCC T ss_conf 11110111111346530220355465499999985487135643115640478983577719999999999999971996 Q ss_pred CHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHH-- Q ss_conf 103455431147664433101000365311331000256532101257778741110268713885123541710589-- Q gi|254781101|r 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS-- 387 (472) Q Consensus 310 ~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~-- 387 (472) .+.|.++|++|++++||+|++. ..++++|+|| |||||+||+++|++++.+.+ .+|.|+|++ +|.++.. T Consensus 361 ~~~i~~~L~~f~g~~~R~e~i~---~~~~~~viDD-YahnP~si~a~l~al~~~~~--~~rii~v~~----~~~~s~~~~ 430 (524) T 3hn7_A 361 VKTACAALSAFAGIKRRMELIG---DVNDILVFDD-FAHHPTAITTTLDGAKKKLA--DRRLWAIIE----PRSNTMKMG 430 (524) T ss_dssp HHHHHHHHHTCCCBTTSSEEEE---EETTEEEEEE-CCCSHHHHHHHHHHHHHHHT--TSCEEEEEE----CCCCSSCCS T ss_pred HHEEEECCCCCCCCHHHHEEEE---ECCCCEEEEE-CCCCHHHHHHHHHHHHHHCC--CCEEEEEEC----CCCCCCHHH T ss_conf 0402220004677332403564---0478159973-47998999999999997669--985999988----899842134 Q ss_pred HHHHHHHHHHHCCCCEEEEEC-----CCHHHHHH----HCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCH--HH Q ss_conf 999999999864998999988-----03898998----51137979997898999999998447898999977132--54 Q gi|254781101|r 388 FHIDLAEVLSLYNISHVWLSG-----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS--CG 456 (472) Q Consensus 388 ~h~~i~~~~~~~~~d~v~~~G-----~~~~~~~~----~~~~~~~~~~~~~~e~a~~~l~~~~~~gdiVLiKGSr~--~~ 456 (472) .+.+....+.. ..|.+++.. +......+ ......+..+++++++|++.+.+.+++||+||+.|+.+ .- T Consensus 431 ~~~~~~~~~~~-~aD~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eai~~~~~~a~~gDiVLi~G~G~~~~i 509 (524) T 3hn7_A 431 IHQDSLAQSAT-LADHTLWYEPTGLEWGLKEVIDNATIANPSIGSQQVLSSVDDIIKHICTHAKAGDAIVIMSNGGFEGI 509 (524) T ss_dssp CCTTHHHHHTT-TSSEEEEECCTTCCCSHHHHHHHHHHHCGGGCCEEEESCHHHHHHHHHHHCCTTCEEEEEESSCGGGH T ss_pred HHHHHHHHHHH-HCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCHHHH T ss_conf 66899999997-49999997888766487878879987434578849989999999999985799899999879976589 Q ss_pred HHHHHHHHHHH Q ss_conf 89999999985 Q gi|254781101|r 457 FYRLINLLLEE 467 (472) Q Consensus 457 le~iv~~L~~~ 467 (472) -++++++|.+. T Consensus 510 ~~~ll~~L~~~ 520 (524) T 3hn7_A 510 HQRLLTALGNI 520 (524) T ss_dssp HHHHHHHHHHC T ss_pred HHHHHHHHHCH T ss_conf 99999987343 |
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, conformational change, peptidoglycan synthesis, cell division, cobalt binding; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A* | Back alignment and structure |
---|
Probab=100.00 E-value=7e-45 Score=314.95 Aligned_cols=338 Identities=20% Similarity=0.205 Sum_probs=229.5 Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCC---CH--HHHHCCC---CC------------- Q ss_conf 899999999999830699399983036542012334677775201122---21--2211014---57------------- Q gi|254781101|r 91 VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA---CI--GSYNNHI---GV------------- 149 (472) Q Consensus 91 ~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~---t~--gn~Nn~i---Gv------------- 149 (472) ++..|..|+. .+.+.++|+||||||||||+.|++++|+..|..++ || -+||..| |. T Consensus 50 i~~~l~~lg~---P~~~~~vI~VtGTNGKtSt~~~l~~iL~~~G~~vG~~tSPhl~~~~Eri~i~g~~I~~~~~~~~~~~ 126 (487) T 2vos_A 50 ISALMDLLGS---PQRSYPSIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQSPVERISIDGKPISPAQYVATYRE 126 (487) T ss_dssp HHHHHHHTTC---GGGSSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHHHH T ss_pred HHHHHHHCCC---HHHCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEEECCEECCHHHHHHHHHH T ss_conf 9999997499---2761997999888018999999999999779986896787738424599999998389999999999 Q ss_pred ---------------------CCHHCC----------CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHH Q ss_conf ---------------------410001----------2322144430156644332112122323220255531210123 Q gi|254781101|r 150 ---------------------PLTLAR----------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198 (472) Q Consensus 150 ---------------------pltll~----------~~~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld 198 (472) ++|.++ .+...+++|+|+|+. |..+ .+++++|+++|||||+.||+| T Consensus 127 i~~~~~~~~~~~~~~~~~~~~~~t~fe~~t~~a~~~~~~~~~d~~v~E~glg--g~~d-atn~~~~~vavITnI~~DH~d 203 (487) T 2vos_A 127 IEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFADAPVDVAVVEVGMG--GRWD-ATNVINAPVAVITPISIDHVD 203 (487) T ss_dssp HHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHTTCSEEEEECSSS--STTS-TTCSSCCSEEEECCCCCCBCS T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH--HHHC-CCCCCCCCEEEECCCCCCHHH T ss_conf 9899876445543211469998877899999999998750316888842046--5304-210345564787167765222 Q ss_pred HHH-HHHHHHHHHHHHCCCC---CCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 444-5788886543310376---221012101342468998752012333332222222222222344211346510012 Q gi|254781101|r 199 NFS-GIEEIASAKAEIFEGL---EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274 (472) Q Consensus 199 ~~~-s~e~i~~~K~~i~~~l---~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~~~~~~~~~~~ 274 (472) +|| |+|+|+.+|+.|++.. +|+..+|++.+++....+......... ...+. ...++..........+..+.+ T Consensus 204 ~lG~t~e~ia~eKagIi~~~~~~~p~~~~v~~~~~~~~~~~~~~~a~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~ 279 (487) T 2vos_A 204 YLGADIAGIAGEKAGIITRAPDGSPDTVAVIGRQVPKVMEVLLAESVRAD--ASVAR--EDSEFAVLRRQIAVGGQVLQL 279 (487) T ss_dssp CSSCCHHHHHHHHHTTCCCCC--CCCCEEEECCCCHHHHHHHHHHHHHTT--CEEEE--BTTTBEEEEEEEETTEEEEEE T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCC--CEEEE--CCCCCCEEEEECCCCCCEEEE T ss_conf 33668999999987677633357997259943542789999999997459--62662--155410012100257723788 Q ss_pred CCCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHH-------CCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECC Q ss_conf 4565-4322122222222333322103567651-------0121034554311476644331010003653113310002 Q gi|254781101|r 275 QLQG-KSMEVVHHGIGYHMAQNMLMTLGIVSIL-------TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 (472) Q Consensus 275 ~~~~-~~~~~~l~~~G~hnv~NalaAia~~~~l-------Gi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsY 346 (472) ...+ ....+.+++.|.||++|+++|++++..+ +++.+.|.++|++++ +|||+|+++ .+...++| | T Consensus 280 ~~~~~~~~~~~l~L~G~h~~~Na~~Aia~~~~l~~~~~~~~i~~~~i~~gL~~~~-~pGR~e~i~----~~~~viiD--~ 352 (487) T 2vos_A 280 QGLGGVYSDIYLPLHGEHQAHNAVLALASVEAFFGAGAQRQLDGDAVRAGFAAVT-SPGRLERMR----SAPTVFID--A 352 (487) T ss_dssp EETTEEEEEEEECCCSHHHHHHHHHHHHHHHHHTTC----CCCHHHHHHHHHTCC-CTTSSEEEE----TTTEEEEC--C T ss_pred ECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCC-CCCCCEECC----CCCEEEEE--C T ss_conf 3488740244468752668988999999999997523433356899999876414-788643025----79769994--5 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEC------CCHHHHHHHCC- Q ss_conf 56532101257778741110268713885123541710589999999999864998999988------03898998511- Q gi|254781101|r 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALP- 419 (472) Q Consensus 347 NAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G------~~~~~~~~~~~- 419 (472) .+||+|+++++++++... ..+|.++|+|.| |++. +.++++.+... +|.++++. .....+.+.+. T Consensus 353 AHNp~a~~~ll~~l~~~~--~~~~ii~V~G~~---~dKD---~~~~l~~l~~~-~d~viit~~~~pR~~~~~~l~~~~~~ 423 (487) T 2vos_A 353 AHNPAGASALAQTLAHEF--DFRFLVGVLSVL---GDKD---VDGILAALEPV-FDSVVVTHNGSPRALDVEALALAAGE 423 (487) T ss_dssp CCSHHHHHHHHHHHHHSC--CCSEEEEEECCB---TTBC---HHHHHHHHTTT-CSEEEECCCSCTTBCCHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHC--CCCCEEEEEECC---CCCC---HHHHHHHHHHH-CCEEEEECCCCCCCCCHHHHHHHHHH T ss_conf 879899999999899865--899789999606---9959---99999998854-89999968999677999999999986 Q ss_pred --CCCCEEEECCHHHHHHHHHHHC-------------CCCCEEEEECCCH Q ss_conf --3797999789899999999844-------------7898999977132 Q gi|254781101|r 420 --RSIHVHYSETMDGLFLFIQSSL-------------VDGDVVVVKSSNS 454 (472) Q Consensus 420 --~~~~~~~~~~~e~a~~~l~~~~-------------~~gdiVLiKGSr~ 454 (472) ...++..++++++|++.+.+.+ .++|+|||.||.. T Consensus 424 ~~~~~~v~~~~~~~eAi~~A~~~a~~~~~~~~~~~~~~~~d~IlV~GSly 473 (487) T 2vos_A 424 RFGPDRVRTAENLRDAIDVATSLVDDAAADPDVAGDAFSRTGIVITGSVV 473 (487) T ss_dssp HHCGGGEEECSSHHHHHHHHHHHHHHHHTCTTTTC----CEEEEEESSHH T ss_pred HCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHH T ss_conf 37876479918999999999997655332234554147998599975199 |
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* | Back alignment and structure |
---|
Probab=100.00 E-value=4.8e-40 Score=282.75 Aligned_cols=325 Identities=18% Similarity=0.197 Sum_probs=205.5 Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHH-----HHHCCCC------------------------CCCHHCC Q ss_conf 0699399983036542012334677775201122212-----2110145------------------------7410001 Q gi|254781101|r 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG-----SYNNHIG------------------------VPLTLAR 155 (472) Q Consensus 105 ~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~t~g-----n~Nn~iG------------------------vpltll~ 155 (472) +.+.++|+||||||||||++|++++|++.|..++..+ ++|..|. ++++.+. T Consensus 49 ~~~~~vI~VtGTNGKtSt~~~i~~iL~~~g~kvG~~tSPhl~~~~Eri~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~e 128 (437) T 3nrs_A 49 KPAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLRYTERVRIQGQELSEAEHSHSFAQIEAGRGDISLTYFE 128 (437) T ss_dssp CSSSEEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECCCCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHTTCCCCHHH T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEECCEECCHHHHHHHHHHHHHCCCCCCCCHHH T ss_conf 00398899977830899999999999987998799788841501236998996426899878876433204788877478 Q ss_pred ----------CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHH-HHHHHHHHHHHHCCCCCCCCHHH Q ss_conf ----------2322144430156644332112122323220255531210123444-57888865433103762210121 Q gi|254781101|r 156 ----------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIF 224 (472) Q Consensus 156 ----------~~~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~-s~e~i~~~K~~i~~~l~~~g~~V 224 (472) .....|++|+|+|+ .|+.++ +++++|+++|||||+.||+|+|| ++++|+.+|+.+++...+ .++ T Consensus 129 ~~~~~a~~~~~~~~~d~~i~E~g~--gg~~d~-t~~~~~~~~viTnI~~DH~d~lg~t~~~Ia~~K~~i~k~~~~--~~~ 203 (437) T 3nrs_A 129 FGTLSALQLFKQAKLDVVILEVGL--GGRLDA-TNIVDSDVAAITSIALDHTDWLGYDRESIGREKAGVFRGGKP--AVV 203 (437) T ss_dssp HHHHHHHHHHHHTCCSEEEEECSS--SSTTSG-GGGSCCSEEEECCCCCCBCCCTTCSHHHHHHHHGGGCCTTSE--EEE T ss_pred HHHHHHHHHHHHCCCCEEEEECCC--HHHHCC-CCCCCCCEEEECCCCHHHHHHCCCHHHHHHHHHHCCCCCCCC--CCC T ss_conf 899999999975698589970471--344177-525654415661424206765141489999996163136986--311 Q ss_pred HCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH Q ss_conf 01342468998752012333332222222222-22234421134651001245654322122222222333322103567 Q gi|254781101|r 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303 (472) Q Consensus 225 iN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~a-d~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G~hnv~NalaAia~~ 303 (472) .+.+.+. .+...+..... .++.++..... +.........................+.....+.||+.|+++|++++ T Consensus 204 ~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~na~~a~a~~ 280 (437) T 3nrs_A 204 GEPDMPQ--SIADVAAELGA-QLYRRDVAWKFSQQEPFDQQEPVDQQINGWHWQCGERQLTGLPVPNVPLANAATALAVL 280 (437) T ss_dssp CCSSCCH--HHHHHHHHHTC-EEEEBTTTEEEEC--------------CCEEEEETTEEEEEECCCSSCHHHHHHHHHHH T ss_pred CCCCCHH--HHHHHHHHHCC-CEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHH T ss_conf 3333246--79999987177-30104742222122301222232222244201354100102115579999999876655 Q ss_pred HHHCCCCH--HHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH----CCCCCCEEEECC Q ss_conf 65101210--345543114766443310100036531133100025653210125777874111----026871388512 Q gi|254781101|r 304 SILTADVD--TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP----HGEGRRIAVLGD 377 (472) Q Consensus 304 ~~lGi~~~--~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~----~~~~r~i~VlG~ 377 (472) ..++++.. .+..++. ...+|||+|++. .++..++| |-+||+|+++.+++++++.. ...+|.++|+|. T Consensus 281 ~~~~~~i~~~~~~~~~~-~~~~pGR~e~i~----~~~~~ilD--~AHNp~a~~~l~~~l~~~~~~~~~~~~~ki~~V~G~ 353 (437) T 3nrs_A 281 HYSELPLSDEAIRQGLQ-AASLPGRFQVVS----EQPLLILD--VAHNPHAARYLVNRLAQVINPVNASKQGKVRAVVGM 353 (437) T ss_dssp HHHTCCCCHHHHHHHHH-HCCCTTSSEEEE----TTTEEEEC--CCCSHHHHHHHHHHHHHTC--------CCEEEEECC T ss_pred HHCCCCCCHHHHHHHHC-CCCCCCCEEEEC----CCCCEEEE--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC T ss_conf 43033441999987531-257688511550----46745662--477889999999999998644430147986999643 Q ss_pred HHHCCCCHHHHHHHHHHHHHHCCCCEEEEECC------CHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEEC Q ss_conf 35417105899999999998649989999880------389899851137979997898999999998447898999977 Q gi|254781101|r 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGF------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451 (472) Q Consensus 378 m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G~------~~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~~~~gdiVLiKG 451 (472) |+ ++. ++++.+.+.. .+|.++++.. ....+.+.+ .....++++++|++.+.+.+.++|+|||.| T Consensus 354 ~~---dKd---~~~~l~~l~~-~~~~ii~~~~d~~r~~~~~~l~~~~---~~~~~~~~~~eAi~~a~~~a~~~d~vLI~G 423 (437) T 3nrs_A 354 LS---DKD---IAGTLACLSE-RVDEWYCAPLEGPRGASAGQLAEHL---VSARQFSDVETAWRQAMQDADTQDVVIVCG 423 (437) T ss_dssp BT---TBC---HHHHHHHHTT-TCCEEEECCCSSTTBCCHHHHHTTC---SSCEECSSHHHHHHHHHHHCCTTCEEEEES T ss_pred CC---CCC---HHHHHHHHHH-HCCEEEEECCCCCCCCCHHHHHHHH---HHCCCCCCHHHHHHHHHHHCCCCCEEEEEE T ss_conf 58---889---9999999885-5899999799997779999999988---757636999999999998479988699971 Q ss_pred CCH Q ss_conf 132 Q gi|254781101|r 452 SNS 454 (472) Q Consensus 452 Sr~ 454 (472) |-. T Consensus 424 Sly 426 (437) T 3nrs_A 424 SFH 426 (437) T ss_dssp SHH T ss_pred HHH T ss_conf 699 |
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthase; TM0166, structural genomics, JCSG, PSI, protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2 | Back alignment and structure |
---|
Probab=100.00 E-value=8.7e-39 Score=274.42 Aligned_cols=341 Identities=16% Similarity=0.120 Sum_probs=224.9 Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCC---CH--HHHHCCC---CC------------ Q ss_conf 9899999999999830699399983036542012334677775201122---21--2211014---57------------ Q gi|254781101|r 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA---CI--GSYNNHI---GV------------ 149 (472) Q Consensus 90 d~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~---t~--gn~Nn~i---Gv------------ 149 (472) .+++.|..|+. .+-+.|+|+||||||||||+.|++++|+..|..++ || .++|..| |. T Consensus 37 r~~~~l~~lg~---P~~~l~vI~VtGTNGKtSt~~~l~~iL~~~g~kvG~~tSp~l~~~~Eri~ing~~~~~~~~~~~~~ 113 (442) T 1o5z_A 37 RISMLLSKLGN---PHLEYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIYE 113 (442) T ss_dssp HHHHHHHHTTC---GGGSSEEEEEECSSSHHHHHHHHHHHHHHHTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHH T ss_pred HHHHHHHHCCC---HHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECCEECCHHHHHHHHH T ss_conf 99999997299---076099899978724799999999999987998899788762742018999999447889999999 Q ss_pred ---------------CCHHCC----------CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHH-HH Q ss_conf ---------------410001----------2322144430156644332112122323220255531210123444-57 Q gi|254781101|r 150 ---------------PLTLAR----------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GI 203 (472) Q Consensus 150 ---------------pltll~----------~~~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~-s~ 203 (472) +++.++ .....|++|+|+|+. |..+ ......|+++++||++.||.++++ ++ T Consensus 114 ~~~~~~~~~~~~~~~~~~~fe~~~~~~~~~f~~~~~d~~i~e~g~~--g~~d-~~~~~~~~~~vit~i~~dh~~~Lg~~l 190 (442) T 1o5z_A 114 TMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLG--GRLD-ATNVVFPLCSTIVTVDRDHEKTLGYTI 190 (442) T ss_dssp HHHHHHHHHTTSTTTCCCHHHHHHHHHHHHHHHTTCSEEEEECSSS--STTC-GGGGCCCSCEEECCCCC-------CCH T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC--CEEC-CEEEECCCCCEEEEECHHHHHHHHHHH T ss_conf 8776554330157888989999999999985433686898860445--4031-246503310114320233788888889 Q ss_pred HHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 88886543310376221012101342468998752012333332222222222222344211346510012456543221 Q gi|254781101|r 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283 (472) Q Consensus 204 e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~~~~~~~~~~~~~~~~~~~~ 283 (472) +.++.+|..+++ ++..++++.+++................... ...++..........+..+.....+....+ T Consensus 191 ~~i~~~k~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (442) T 1o5z_A 191 EQIAWEKSGIIK---ERVPLVTGERKREALKVMEDVARKKSSRMYV----IDKDFSVKVKSLKLHENRFDYCGENTFEDL 263 (442) T ss_dssp HHHHHHHGGGCC---TTCCEEECCCCHHHHHHHHHHHHHHTCCEEE----BTTTBEEEEEECCTTCEEEEEESSSEEEEE T ss_pred HHHHHHHHCCCC---CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE----EEECCHHHHHHCCCCCCEEEECCCCCCCCC T ss_conf 999998631123---5774100455558899999999960886378----740100111101346733653276630243 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCC--HHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHH Q ss_conf 222222223333221035676510121--034554311476644331010003653113310002565321012577787 Q gi|254781101|r 284 VHHGIGYHMAQNMLMTLGIVSILTADV--DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361 (472) Q Consensus 284 ~l~~~G~hnv~NalaAia~~~~lGi~~--~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~ 361 (472) .++++|.||++|+++|++++..+|++. +.+.+++..+. +|||+|++.. ++..+|+| |-+||+|+++++++++ T Consensus 264 ~~~l~G~~ni~Na~~Aiaa~~~lg~~i~~~~~~~~l~~~~-~pGR~e~i~~----~~~~viiD-~AHNp~ai~~ll~~l~ 337 (442) T 1o5z_A 264 VLTMNGPHQIENAGVALKTLEATGLPLSEKAIREGLKNAK-NLGRFEILEK----NGKMYILD-GAHNPHGAESLVRSLK 337 (442) T ss_dssp EESSCSTHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC-CTTSSEEEEE----TTEEEEEC-CCCSHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-CCCCCCCCCC----CCCEEEEE-CCCCHHHHHHHHHHHH T ss_conf 5466746799999999999998398336787655653366-8997744236----67569997-7879899999999998 Q ss_pred HHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEC------CCHHHHHHHCCC-CCCEEEECCHHHHH Q ss_conf 41110268713885123541710589999999999864998999988------038989985113-79799978989999 Q gi|254781101|r 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPR-SIHVHYSETMDGLF 434 (472) Q Consensus 362 ~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G------~~~~~~~~~~~~-~~~~~~~~~~e~a~ 434 (472) .+.+ .+|.++|+|.| |++. ++++++.+.. .+|.|+++. ++...+.+.+.. ..++..+++..+++ T Consensus 338 ~~~~--~~~i~~V~G~~---~dKD---~~~~l~~l~~-~~d~viit~~~~~R~~~~~~i~~~~~~~~~~~~~~~d~~~ai 408 (442) T 1o5z_A 338 LYFN--GEPLSLVIGIL---DDKN---REDILRKYTG-IFERVIVTRVPSPRMKDMNSLVDMAKKFFKNVEVIEDPLEAI 408 (442) T ss_dssp HHCT--TCCEEEEECCC---TTSC---HHHHHGGGTT-TCSEEEECCCSSTTCCCHHHHHHHHHHHCSCCEECSSHHHHH T ss_pred HHHC--CCCEEEEEEEE---CCCC---HHHHHHHHHH-HCCEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 8745--68748999850---7989---9999999885-579999989999676899999999998579841185599997 Q ss_pred HHHHHHCCCCCEEEEECCCHHHHHHHHHHHH Q ss_conf 9999844789899997713254899999999 Q gi|254781101|r 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 (472) Q Consensus 435 ~~l~~~~~~gdiVLiKGSr~~~le~iv~~L~ 465 (472) + .++|.|||.||-.. .-.+.+.|. T Consensus 409 ~------~~~d~vlV~GSlyl-vg~v~~~l~ 432 (442) T 1o5z_A 409 E------STERATVVTGSLFL-VGYVREFLT 432 (442) T ss_dssp H------TCCSEEEEESCHHH-HHHHHHHHH T ss_pred H------CCCCCEEEEEEHHH-HHHHHHHHH T ss_conf 2------79999999811999-999999997 |
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A | Back alignment and structure |
---|
Probab=100.00 E-value=4.3e-36 Score=256.60 Aligned_cols=353 Identities=17% Similarity=0.177 Sum_probs=216.8 Q ss_pred CCEEEECCHHHHHHHHHHHH-HHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCC---CHH--HHHCCC---CCCCH- Q ss_conf 72899599899999999999-830699399983036542012334677775201122---212--211014---57410- Q gi|254781101|r 83 IPVFGVDDVLGALNKLAVAA-RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA---CIG--SYNNHI---GVPLT- 152 (472) Q Consensus 83 ~~~i~v~d~~~al~~la~~~-~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~---t~g--n~Nn~i---Gvplt- 152 (472) +|........+-+.++.... ..+-+.++||||||||||||+.|++++|+..|..++ |++ ++|..| |.|++ T Consensus 13 ~~~~~~~~~~~r~~~~l~~lg~P~~~~~~I~VTGTNGKTTTs~~l~~iL~~~G~kvG~~tSp~l~~~~eri~~~g~~i~~ 92 (428) T 1jbw_A 13 FPRLAKTGDHRRILTLLHALGNPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMIDHEPIPD 92 (428) T ss_dssp CCCCCCCSSCHHHHHHHHHTTCGGGSSCEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCH T ss_pred CCCCCCCCCHHHHHHHHHHCCCHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEEECCEECCH T ss_conf 77557789879999999974993870998999898227999999999999889988997888747024489999995578 Q ss_pred ---------------------------H---C-------CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCC Q ss_conf ---------------------------0---0-------12322144430156644332112122323220255531210 Q gi|254781101|r 153 ---------------------------L---A-------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195 (472) Q Consensus 153 ---------------------------l---l-------~~~~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~d 195 (472) - + -.....+++++|.|.. +..+ .+.++.|+++++||++.| T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~e~~~~--~~~~-~~~~~~~~~~~it~i~~d 169 (428) T 1jbw_A 93 AALVNAVAFVRAALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIG--GDTD-STNVITPVVSVLTEVALD 169 (428) T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECSSS--STTS-TTCSCCCSEEEECCCCSC T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH--HHCC-CCEEEECCEEEEECCCCH T ss_conf 9999999998999998875226888868999999999999872674799752302--1104-625741232234044500 Q ss_pred HHHHHH-HHHHHHHHHHHHCCCCCCCCHHHHCCCCHH-HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 123444-578888654331037622101210134246-899875201233333222222222222234421134651001 Q gi|254781101|r 196 HLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273 (472) Q Consensus 196 Hld~~~-s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~-~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~~~~~~~~~~ 273 (472) |.++++ +++.++.+|..++.... ..+.+..++. .............. +.+ ...++.+........+..+. T Consensus 170 h~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~ 241 (428) T 1jbw_A 170 HQKLLGHTITAIAKHKAGIIKRGI---PVVTGNLVPDAAAVVAAKVATTGSQ--WLR---FDRDFSVPKAKLHGWGQRFT 241 (428) T ss_dssp CHHHHCSSHHHHHHHHGGGCCTTC---CEEECCCCHHHHHHHHHHHHHHTCC--EEE---BTTTEEEEEEEECSSSEEEE T ss_pred HHHHHCCCHHHHHHHHHHHHCCCC---CEEECCCCCHHHHHHHHHHHHHCCC--EEE---CCCCCCCCHHHHCCCCCCEE T ss_conf 898866539999998541332465---3010356714678999999861784--120---25422220111024576113 Q ss_pred CCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHC------CCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECC Q ss_conf 245-6543221222222223333221035676510------121034554311476644331010003653113310002 Q gi|254781101|r 274 VQL-QGKSMEVVHHGIGYHMAQNMLMTLGIVSILT------ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346 (472) Q Consensus 274 ~~~-~~~~~~~~l~~~G~hnv~NalaAia~~~~lG------i~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsY 346 (472) +.. .+....+.++++|.||++|+++|++++..+| .+...+..+|+.++ +|||++++. .+. .+|+| | T Consensus 242 ~~~~~~~~~~~~~~l~G~~~~~N~~~aia~~~~~~~~~~~~~~~~~i~~~l~~~~-~~gR~e~i~----~~~-~iivD-~ 314 (428) T 1jbw_A 242 YEDQDGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQTEWPLTPQNIRQGLAASH-WPARLEKIS----DTP-LIVID-G 314 (428) T ss_dssp EEETTEEEEEEEESCCSTHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTCC-CTTSSEEEE----TTT-TEEEE-C T ss_pred EECCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-CCCEEEEEC----CCC-EEEEE-C T ss_conf 4022100023577875356888899999999998652101014788763430356-687567852----663-79996-6 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEC--CCHHHHHH-HCCCCCC Q ss_conf 56532101257778741110268713885123541710589999999999864998999988--03898998-5113797 Q gi|254781101|r 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--FHVLALKD-ALPRSIH 423 (472) Q Consensus 347 NAnP~S~~aal~~l~~~~~~~~~r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G--~~~~~~~~-~~~~~~~ 423 (472) .+||+|+++++++++.+. .+|.++|+|-+ |++. ++++++.+... +|.++++. ...+...+ .++.... T Consensus 315 AHnp~a~~~~l~~l~~~~---~~k~~~V~G~~---gdkD---~~~~~~~~~~~-~d~v~i~~~~~~~r~~~~~~~~~~~~ 384 (428) T 1jbw_A 315 AHNPDGINGLITALKQLF---SQPITVIAGIL---ADKD---YAAMADRLTAA-FSTVYLVPVPGTPRALPEAGYEALHE 384 (428) T ss_dssp CCSHHHHHHHHHHHHHHC---SSCCEEEEECS---SSTT---HHHHHHHHHHH-CSEEEECCCSCC-------------- T ss_pred CCCHHHHHHHHHHHHHHC---CCCCEEEEEEC---CCCC---HHHHHHHHHHH-CCEEEEECCCCCCCCCCHHHHHHHHC T ss_conf 889999999999999733---99845998531---7979---99999998855-79999999999966470999987621 Q ss_pred EEEECCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHH Q ss_conf 999789899999999844789899997713254899999999 Q gi|254781101|r 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465 (472) Q Consensus 424 ~~~~~~~e~a~~~l~~~~~~gdiVLiKGSr~~~le~iv~~L~ 465 (472) ....++.++|++.+.+.. ++|.|||.||-.. ...+.+.|+ T Consensus 385 ~~~~~~~~eAi~~a~~~~-~~d~ilI~GS~yl-~g~v~~~l~ 424 (428) T 1jbw_A 385 GRLKDSWQEALAASLNDV-PDQPIVITGSLYL-ASAVRQTLL 424 (428) T ss_dssp -CBCSSHHHHHHHHHHHC-TTSCEEEEESHHH-HHHHHHHHT T ss_pred CCCCCCHHHHHHHHHHHC-CCCCEEEECHHHH-HHHHHHHHH T ss_conf 764588999999999748-9996999767999-999999986 |
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A* | Back alignment and structure |
---|
Probab=100.00 E-value=4.8e-35 Score=249.69 Aligned_cols=338 Identities=17% Similarity=0.167 Sum_probs=207.8 Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCC---CHH--HHHCCCCC--------------- Q ss_conf 9899999999999830699399983036542012334677775201122---212--21101457--------------- Q gi|254781101|r 90 DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA---CIG--SYNNHIGV--------------- 149 (472) Q Consensus 90 d~~~al~~la~~~~~~~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~~---t~g--n~Nn~iGv--------------- 149 (472) .+++.+..|+ ..+.+.+|||||||||||||++|++++|++.|..++ ||+ ++|..|.. T Consensus 34 r~~~~~~~l~---~p~~~~~vI~VTGTNGKTTT~~li~~iL~~~G~~vg~~~sp~l~~~~eri~~~~~~i~~~~~~~~~~ 110 (422) T 1w78_A 34 RVSLVAARLG---VLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPESAHTASFA 110 (422) T ss_dssp HHHHHHHHHT---CSSCSSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHH T ss_pred HHHHHHHHCC---CCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEECCEECCHHHHHHHHH T ss_conf 9999999749---9621598899988821899999999999988998899798772604423899987435687665778 Q ss_pred ---------CCHHCC----------CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHH-HHHHHHHH Q ss_conf ---------410001----------2322144430156644332112122323220255531210123444-57888865 Q gi|254781101|r 150 ---------PLTLAR----------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASA 209 (472) Q Consensus 150 ---------pltll~----------~~~~~~~~V~E~g~~~~gei~~L~~i~~P~iaiiTNI~~dHld~~~-s~e~i~~~ 209 (472) +++.+. ...+.|++++|.|. .|..++ ...+.|+++++|||+.||+++++ +++.++.+ T Consensus 111 ~~~~~~~~~~~~~~~~~~~~a~~~f~~~~~d~~~~e~~~--~~~~d~-~~~~~~~~~~~t~i~~dH~d~l~~~~~~i~~~ 187 (422) T 1w78_A 111 EIESARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGL--GGRLDA-TNIVDADVAVVTSIALDHTDWLGPDRESIGRE 187 (422) T ss_dssp HHHHHTTTCCCCHHHHHHHHHHHHHHHHTCSEEEEECSS--SSTTSG-GGGSCCSEEEECCCCSCCHHHHCSSHHHHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCH--HHHHCC-CCCCCCCCEECCCCCHHHHHHHCCHHHHHHHH T ss_conf 888873378875678999999999876599879984463--776364-22211132000455211666425376778999 Q ss_pred HHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 43310376221012101342468998752012333332222222222222344211346510012456543221222222 Q gi|254781101|r 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289 (472) Q Consensus 210 K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~G 289 (472) |+.+++.-. ..++...+....... ....... .+........ .........+. ...+....+.+++.| T Consensus 188 k~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~ 254 (422) T 1w78_A 188 KAGIFRSEK---PAIVGEPEMPSTIAD-VAQEKGA-LLQRRGVEWN-------YSVTDHDWAFS-DAHGTLENLPLPLVP 254 (422) T ss_dssp HGGGCCTTS---EEEECCSSCCHHHHH-HHHHHTC-EEEEBTTTBE-------EEECSSCEEEE-ETTEEEEEECCCSSC T ss_pred HHHHHCCCC---CCCHHCCCHHHHHHH-HHHHHHH-HHHHHHHHHC-------CCCCCCCCCCC-CCCCCCCCCCHHHHH T ss_conf 875431688---530010003667788-8887645-7777655410-------21002443234-654542222224567 Q ss_pred CCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 22333322103567651012103455431147664433101000365311331000256532101257778741110268 Q gi|254781101|r 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369 (472) Q Consensus 290 ~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~GR~~~~~~~~~~~~~~iIDDsYNAnP~S~~aal~~l~~~~~~~~~ 369 (472) .||+.||++|++ +...+++.+.|.+++... .++||++++. .+ ..+|+| |-+||+|+++++++++.+.. .+ T Consensus 255 ~~N~~nAlaa~~-~~~~~~~~~~I~~~~~~~-~~~gR~e~l~----~~-~~viiD-~AHNp~a~~a~l~~l~~~~~--~~ 324 (422) T 1w78_A 255 QPNAATALAALR-ASGLEVSENAIRDGIASA-ILPGRFQIVS----ES-PRVIFD-VAHNPHAAEYLTGRMKALPK--NG 324 (422) T ss_dssp HHHHHHHHHHHH-HHTCCCCHHHHHHHHHHC-CCTTSSEEEE----TT-TEEEEE-CCCSHHHHHHHHHHHHHSCS--CS T ss_pred HHHHHHHHHHHH-HHCCCCCHHHHHHHHCCC-CCCCCEEEEC----CC-CEEEEE-CCCCHHHHHHHHHHHHHHCC--CC T ss_conf 778999999999-827886789998741234-5567316961----48-749997-68898999999985355425--87 Q ss_pred CCEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEC------CCHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCC Q ss_conf 713885123541710589999999999864998999988------03898998511379799978989999999984478 Q gi|254781101|r 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443 (472) Q Consensus 370 r~i~VlG~m~ELG~~~~~~h~~i~~~~~~~~~d~v~~~G------~~~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~~~~ 443 (472) +.++|+|.+ |+. .++.+++.+... ++.++++. +....+.+.+. +...++++++|++.+.+.+++ T Consensus 325 ~ii~i~G~~---~dk---d~~~~~~~~~~~-~~~iii~~~~~~r~~~~~~i~~~~~---~~~~~~~~~eAi~~a~~~a~~ 394 (422) T 1w78_A 325 RVLAVIGML---HDK---DIAGTLAWLKSV-VDDWYCAPLEGPRGATAEQLLEHLG---NGKSFDSVAQAWDAAMADAKA 394 (422) T ss_dssp CEEEEECCB---TTS---CHHHHHHHHHTT-CSEEEECCCCSSSBCCHHHHHHHHS---SCEECSSHHHHHHHHHHHCCT T ss_pred CEEEECCCC---CCC---CHHHHHHHHHHH-CCEEEEECCCCCCCCCHHHHHHHHC---CCCCCCCHHHHHHHHHHHCCC T ss_conf 537821555---786---899999998865-6999998999977799999999852---187469999999999985799 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHH Q ss_conf 989999771325489999999985 Q gi|254781101|r 444 GDVVVVKSSNSCGFYRLINLLLEE 467 (472) Q Consensus 444 gdiVLiKGSr~~~le~iv~~L~~~ 467 (472) ||+|||.||-.. ..++.+.|..+ T Consensus 395 ~d~VLI~GS~yl-~g~vl~~l~~~ 417 (422) T 1w78_A 395 EDTVLVCGSFHT-VAHVMEVIDAR 417 (422) T ss_dssp TCEEEEESSHHH-HHHHHHHHHHH T ss_pred CCEEEEECHHHH-HHHHHHHHHHC T ss_conf 887999546999-99999999860 |
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- MESO-diaminopimelate ligase; structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
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Probab=100.00 E-value=7.7e-41 Score=288.01 Aligned_cols=211 Identities=19% Similarity=0.217 Sum_probs=168.7 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCC-----CCHHHHHCCCCCCCHHCCC-CCCCHHHHHCCCCCCCCCCCCCC Q ss_conf 69939998303654201233467777520112-----2212211014574100012-32214443015664433211212 Q gi|254781101|r 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTY-----ACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLT 179 (472) Q Consensus 106 ~~~~vI~ITGTnGKTTt~~~l~~iL~~~~~~~-----~t~gn~Nn~iGvpltll~~-~~~~~~~V~E~g~~~~gei~~L~ 179 (472) .+.++||||||||||||++|++++|+..|... ...+|+++.+++|.+.... ..+.+|+|+|++.++.+++..++ T Consensus 106 ~~~~vIaVTGTnGKTTTt~mi~~iL~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~E~~~~~~~~~~~~~ 185 (326) T 3eag_A 106 HHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSARLPQTPRQDPNSQSPFFVIEADEYDTAFFDKRS 185 (326) T ss_dssp GGSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEECSSEETTSSCSEECCCCCSSCTTSCCCEEEEECCCSEEETTEEEE T ss_pred CCCCEEEEECCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEC T ss_conf 56737999468995549999999998619983111455322457600135554444455673222221576535677403 Q ss_pred CC--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 23--2322025553121012344457888865433103762210121013424689987520123333322222222222 Q gi|254781101|r 180 HL--VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257 (472) Q Consensus 180 ~i--~~P~iaiiTNI~~dHld~~~s~e~i~~~K~~i~~~l~~~g~~ViN~Dd~~~~~l~~~~~~~~~~~i~~~g~~~~ad 257 (472) ++ ++|+++|||||++||||+|+|+|+|+++|.++++.+++++.+|+|.||+....+..+... ..+++|+.+...+ T Consensus 186 ~~~~~~p~iaviTNI~~DHLd~~~s~e~y~~~k~~~~~~~~~~g~~v~n~d~~~~~~~~~~~~~---~~~~~~~~~~~~~ 262 (326) T 3eag_A 186 KFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVRTVPSEGLIVCNGRQQSLQDTLDKGCW---TPVEKFGTEHGWQ 262 (326) T ss_dssp GGGGSCCSEEEECCCCCCCTTTSSSHHHHHHHHHHHHTTSCTTSEEEEESSCHHHHHHHTTCCC---SCEEEESSSSSEE T ss_pred CCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCC---CCCCCCCCCHHHH T ss_conf 4434689789996444542243489999999999999743657389993787899999865213---5520025420222 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCC Q ss_conf 223442113465100124565432-2122222222333322103567651012103455431147664 Q gi|254781101|r 258 FQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324 (472) Q Consensus 258 ~~~~~i~~~~~~~~~~~~~~~~~~-~~~l~~~G~hnv~NalaAia~~~~lGi~~~~i~~~L~~~~~~~ 324 (472) +.... ....|.+...++.. ++.++++|+||++|+++|+++|..+|+++++|.++|++|+++. T Consensus 263 ~~~~~-----~~~~~~~~~~~~~~~~~~l~l~G~HNv~NalaAia~a~~lGi~~~~i~~aL~~F~GV~ 325 (326) T 3eag_A 263 AGEAN-----ADGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVIAAARHVGVDIQTACEALGAFKNVK 325 (326) T ss_dssp EEEEC-----TTSCEEEEETTEEEEEECCCCCSHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTCCCEE T ss_pred HHHHC-----CCCEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCC T ss_conf 33314-----7716999999918899997865299999999999999984999999999974698989 |
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi} | Back alignment and structure |
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Probab=99.54 E-value=1.8e-14 Score=113.47 Aligned_cols=151 Identities=17% Similarity=0.172 Sum_probs=97.3 Q ss_pred HHCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCCCC Q ss_conf 51012103455431147664433101000365311331000256532101257778741110268713885123541710 Q gi|254781101|r 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES |