254781102
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
GeneID in NCBI database: | 8210127 | Locus tag: | CLIBASIA_05020 |
Protein GI in NCBI database: | 254781102 | Protein Accession: | YP_003065515.1 |
Gene range: | -(1101593, 1103086) | Protein Length: | 497aa |
Gene description: | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase | ||
COG prediction: | [M] UDP-N-acetylmuramyl tripeptide synthase | ||
KEGG prediction: | murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC:6.3.2.13); K01928 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] | ||
SEED prediction: | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13) | ||
Pathway involved in KEGG: | Lysine biosynthesis [PATH:las00300]
Peptidoglycan biosynthesis [PATH:las00550] | ||
Subsystem involved in SEED: | Peptidoglycan Biosynthesis; | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
Identity | Alignment graph | Length | Definition | E-value | |
Target | 497 | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopime | |||
254781101 | 472 | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino | 4e-09 | ||
254781099 | 468 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 0.003 | ||
254780821 | 429 | FolC bifunctional protein [Candidatus Liberibacter | 0.024 |
>gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 472 | Back alignment |
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Score = 54.7 bits (130), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 87/376 (23%), Positives = 153/376 (40%), Gaps = 42/376 (11%) Query: 30 INEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRS- 88 +N +S DSR I F AI G DGH FI A+ +GA +VV++ D A+I S Sbjct: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-----DMVASIGSL 81 Query: 89 NTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQIG 148 + P+ VD+ L+ A + I+A+TG+ GK++ + LSS + Sbjct: 82 SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT-----IALSSIK-K 135 Query: 149 PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA-- 206 + I S+ +N + P+ LA+ V V+ L L I+ + Sbjct: 136 TYACIGSY--NNHIGV--PLTLAR----------MPVDVDFGIFELGMSHLGEIRFLTHL 181 Query: 207 -----GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAH 261 T + H+ + +AK +FE L K + DD++ + + ++H Sbjct: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSH 240 Query: 262 NAGCR-VLSVG-YQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 G + + S G + L+K + + + ++GK + + G N L+ Sbjct: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFE-FVGTNSRGGRIYVDYAHTSNSLEM-----IL 373 G+ + D ++ L H GR + + ++G +D ++ +N M +L Sbjct: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360 Query: 374 KNIRTITSGRIIVVFG 389 I GR I V G Sbjct: 361 SQISPHGEGRRIAVLG 376 |
>gi|254781099|ref|YP_003065512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 468 | Back alignment |
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Score = 34.7 bits (78), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 31/121 (25%) Query: 118 LAVTGTSGKSSVASFVQQICQRSGLSSFQIG-----PTSTISSFAQDNRLTTPSPIYLAK 172 +AVTGT+GKSS + + + +++G Q+G P + F +P+ Y+ + Sbjct: 116 IAVTGTNGKSSTVALISHVLRKNGY-DVQLGGNIGLPILNLEYF-------SPNRFYVIE 167 Query: 173 ALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMR 232 SY +E + I G N+ DH+D H T + Y N K + Sbjct: 168 CSSY---------QIELTP---------TIDPSIGVLLNISPDHLDRHHTLENYVNIKKK 209 Query: 233 L 233 + Sbjct: 210 I 210 |
>gi|254780821|ref|YP_003065234.1| FolC bifunctional protein [Candidatus Liberibacter asiaticus str. psy62] Length = 429 | Back alignment |
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Score = 32.0 bits (71), Expect = 0.024, Method: Compositional matrix adjust. Identities = 14/27 (51%), Positives = 21/27 (77%) Query: 117 ILAVTGTSGKSSVASFVQQICQRSGLS 143 ++ + GT+GK SVASF Q++ + SGLS Sbjct: 26 VIHIGGTNGKGSVASFSQRLLETSGLS 52 |
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 497 | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopime | |||
315122414 | 500 | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopime | 1 | 0.0 | |
227822656 | 486 | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopime | 1 | 1e-125 | |
86358455 | 506 | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopime | 1 | 1e-125 | |
222086449 | 487 | UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Agrobacteriu | 1 | 1e-125 | |
190892588 | 506 | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opim | 1 | 1e-124 | |
265984473 | 490 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopi | 1 | 1e-124 | |
254719467 | 488 | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopime | 1 | 1e-124 | |
261222578 | 490 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopi | 1 | 1e-124 | |
209550179 | 505 | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopime | 1 | 1e-124 | |
254708108 | 488 | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopime | 1 | 1e-124 |
>gi|315122414|ref|YP_004062903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 500 | Back alignment and organism information |
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Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/496 (76%), Positives = 441/496 (88%), Gaps = 3/496 (0%) Query: 1 MKLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFI 60 MKLQDLIYKDFPELINQLS FP+Q RER+I+++SSDSRHIQ GW+FVAIVGN+EDGH FI Sbjct: 1 MKLQDLIYKDFPELINQLSRFPIQLRERRIHDISSDSRHIQVGWMFVAIVGNQEDGHFFI 60 Query: 61 PQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENILAV 120 PQA+AQGA IVVSS + QDFS ++++ PILVVDNTR+FLSL A+RLYGKHPE I AV Sbjct: 61 PQAVAQGAGVIVVSSMHQSQDFSHVVKADIPILVVDNTRRFLSLVAARLYGKHPEKIFAV 120 Query: 121 TGTSGKSSVASFVQQICQRSGLSSFQIGPTSTISSFA-QDNRLTTPSPIYLAKALSYLSS 179 TGTSGK+SVASFVQQI Q +GLSSFQIGP S + S +DNRLTTPSP+Y+A+AL+YL+S Sbjct: 121 TGTSGKTSVASFVQQISQHAGLSSFQIGPISLMPSLQREDNRLTTPSPVYIAQALAYLAS 180 Query: 180 QGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLP 239 QG THVS+EASSHGLDQHRLDGIK IAGSFTN GRDHIDYH+TQQAYFNAKMRLFEELLP Sbjct: 181 QGTTHVSIEASSHGLDQHRLDGIKFIAGSFTNFGRDHIDYHKTQQAYFNAKMRLFEELLP 240 Query: 240 KESPAIIYA--DDAYSKEVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEG 297 K SPA+I DD++S +VM+RAHNAGCRVLSVGY+G FI LK + I++KQQV+ISVEG Sbjct: 241 KGSPAVICNNDDDSWSNKVMERAHNAGCRVLSVGYKGTFIRLKNLTQINDKQQVSISVEG 300 Query: 298 KDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGR 357 KDFDFLFPL G FQV NALV+AGLCIA GID +V+E+LEK++V+PGRFEF+G NS+GGR Sbjct: 301 KDFDFLFPLQGAFQVSNALVSAGLCIATGIDVPVVIEYLEKVNVIPGRFEFIGNNSKGGR 360 Query: 358 IYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTD 417 IYVDYAHT NSLEM+L+N+R ITSGRIIVVFGCGGDRD+GKR IMGKIAL+LAD++IVTD Sbjct: 361 IYVDYAHTPNSLEMVLRNLRNITSGRIIVVFGCGGDRDRGKRKIMGKIALELADLSIVTD 420 Query: 418 DNPRSEDPEKIRAEIIHGIPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTN 477 DNPRSE+P+ IRAEII+G PGFIE+GNR EAIR AI MLNK+DVLVVAGKGHETV I+ N Sbjct: 421 DNPRSENPQAIRAEIINGFPGFIEEGNRQEAIRIAISMLNKEDVLVVAGKGHETVQIIHN 480 Query: 478 GEKKMSVDCDIIREIL 493 G+ KMSVDCD+IREIL Sbjct: 481 GKIKMSVDCDVIREIL 496 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|227822656|ref|YP_002826628.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Sinorhizobium fredii NGR234] Length = 486 | Back alignment and organism information |
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>gi|86358455|ref|YP_470347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhizobium etli CFN 42] Length = 506 | Back alignment and organism information |
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>gi|222086449|ref|YP_002544983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Agrobacterium radiobacter K84] Length = 487 | Back alignment and organism information |
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>gi|190892588|ref|YP_001979130.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase [Rhizobium etli CIAT 652] Length = 506 | Back alignment and organism information |
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>gi|265984473|ref|ZP_06097208.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella sp. 83/13] Length = 490 | Back alignment and organism information |
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>gi|254719467|ref|ZP_05181278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella sp. 83/13] Length = 488 | Back alignment and organism information |
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>gi|261222578|ref|ZP_05936859.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase [Brucella ceti B1/94] Length = 490 | Back alignment and organism information |
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>gi|209550179|ref|YP_002282096.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 505 | Back alignment and organism information |
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>gi|254708108|ref|ZP_05169936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Brucella pinnipedialis M163/99/10] Length = 488 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 497 | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopime | ||
PRK00139 | 460 | PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate- | 1e-141 | |
PRK11929 | 958 | PRK11929, PRK11929, putative bifunctional UDP-N-acetylm | 1e-108 | |
PRK14022 | 481 | PRK14022, PRK14022, UDP-N-acetylmuramoylalanyl-D-glutam | 3e-63 | |
TIGR01085 | 464 | TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide synthet | 1e-107 | |
PRK04308 | 445 | PRK04308, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutama | 6e-08 | |
COG0769 | 475 | COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase | 1e-105 | |
pfam08245 | 188 | pfam08245, Mur_ligase_M, Mur ligase middle domain | 1e-34 | |
PRK02006 | 498 | PRK02006, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutama | 3e-09 | |
PRK03806 | 438 | PRK03806, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutama | 1e-06 | |
PRK04663 | 438 | PRK04663, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutama | 3e-05 | |
PRK03803 | 448 | PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutama | 4e-04 | |
COG0770 | 451 | COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthas | 8e-34 | |
TIGR01143 | 417 | TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide--D-ala | 5e-29 | |
PRK11929 | 958 | PRK11929, PRK11929, putative bifunctional UDP-N-acetylm | 6e-24 | |
PRK03369 | 488 | PRK03369, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutama | 2e-09 | |
COG0771 | 448 | COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate | 9e-27 | |
COG0285 | 427 | COG0285, FolC, Folylpolyglutamate synthase [Coenzyme me | 4e-18 | |
TIGR02068 | 864 | TIGR02068, cya_phycin_syn, cyanophycin synthetase | 3e-14 | |
TIGR01499 | 397 | TIGR01499, folC, folylpolyglutamate synthase/dihydrofol | 5e-10 | |
TIGR01087 | 433 | TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-glutama | 7e-24 | |
PRK01390 | 460 | PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutama | 2e-12 | |
PRK01438 | 480 | PRK01438, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutama | 6e-12 | |
PRK02472 | 447 | PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutama | 6e-12 | |
PRK02705 | 459 | PRK02705, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutama | 2e-05 | |
TIGR01081 | 448 | TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-g | 0.002 | |
COG0773 | 459 | COG0773, MurC, UDP-N-acetylmuramate-alanine ligase [Cel | 2e-23 | |
PRK00141 | 473 | PRK00141, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutama | 3e-08 | |
pfam02875 | 87 | pfam02875, Mur_ligase_C, Mur ligase family, glutamate l | 1e-19 | |
TIGR01082 | 448 | TIGR01082, murC, UDP-N-acetylmuramate--alanine ligase | 2e-17 | |
KOG2525 | 496 | KOG2525, KOG2525, KOG2525, Folylpolyglutamate synthase | 4e-04 | |
PRK00421 | 461 | PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; | 2e-14 | |
PRK10773 | 453 | PRK10773, murF, UDP-N-acetylmuramoyl-tripeptide--D-alan | 5e-14 | |
pfam01225 | 76 | pfam01225, Mur_ligase, Mur ligase family, catalytic dom | 9e-12 | |
PRK14093 | 479 | PRK14093, PRK14093, UDP-N-acetylmuramoylalanyl-D-glutam | 2e-08 | |
PRK11930 | 822 | PRK11930, PRK11930, putative bifunctional UDP-N-acetylm | 1e-12 | |
PRK14106 | 450 | PRK14106, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutama | 3e-12 | |
PRK00683 | 418 | PRK00683, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutama | 1e-07 | |
PRK01368 | 454 | PRK01368, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutama | 1e-05 | |
PRK04690 | 468 | PRK04690, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutama | 3e-06 | |
PRK10773 | 453 | PRK10773, murF, UDP-N-acetylmuramoyl-tripeptide--D-alan | 7e-05 | |
PRK14573 | 809 | PRK14573, PRK14573, bifunctional D-alanyl-alanine synth | 4e-04 |
>gnl|CDD|178894 PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Provisional | Back alignment and domain information |
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>gnl|CDD|183385 PRK11929, PRK11929, putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase; Provisional | Back alignment and domain information |
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>gnl|CDD|184459 PRK14022, PRK14022, UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional | Back alignment and domain information |
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>gnl|CDD|162196 TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide synthetase | Back alignment and domain information |
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>gnl|CDD|167786 PRK04308, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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>gnl|CDD|31112 COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
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>gnl|CDD|149357 pfam08245, Mur_ligase_M, Mur ligase middle domain | Back alignment and domain information |
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>gnl|CDD|179359 PRK02006, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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>gnl|CDD|179651 PRK03806, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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>gnl|CDD|179871 PRK04663, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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>gnl|CDD|179650 PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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>gnl|CDD|31113 COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
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>gnl|CDD|162224 TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | Back alignment and domain information |
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>gnl|CDD|183385 PRK11929, PRK11929, putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase; Provisional | Back alignment and domain information |
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>gnl|CDD|179571 PRK03369, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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>gnl|CDD|31114 COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
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>gnl|CDD|30633 COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism] | Back alignment and domain information |
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>gnl|CDD|162681 TIGR02068, cya_phycin_syn, cyanophycin synthetase | Back alignment and domain information |
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>gnl|CDD|162392 TIGR01499, folC, folylpolyglutamate synthase/dihydrofolate synthase | Back alignment and domain information |
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>gnl|CDD|162197 TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
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>gnl|CDD|179291 PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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>gnl|CDD|179297 PRK01438, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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>gnl|CDD|179428 PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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>gnl|CDD|179461 PRK02705, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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>gnl|CDD|130153 TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase | Back alignment and domain information |
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>gnl|CDD|31116 COG0773, MurC, UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
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>gnl|CDD|178896 PRK00141, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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>gnl|CDD|145824 pfam02875, Mur_ligase_C, Mur ligase family, glutamate ligase domain | Back alignment and domain information |
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>gnl|CDD|162195 TIGR01082, murC, UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
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>gnl|CDD|37736 KOG2525, KOG2525, KOG2525, Folylpolyglutamate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|179018 PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
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>gnl|CDD|182718 PRK10773, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed | Back alignment and domain information |
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>gnl|CDD|144716 pfam01225, Mur_ligase, Mur ligase family, catalytic domain | Back alignment and domain information |
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>gnl|CDD|184501 PRK14093, PRK14093, UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional | Back alignment and domain information |
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>gnl|CDD|183386 PRK11930, PRK11930, putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional | Back alignment and domain information |
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>gnl|CDD|184511 PRK14106, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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>gnl|CDD|179086 PRK00683, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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>gnl|CDD|179286 PRK01368, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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>gnl|CDD|179872 PRK04690, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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>gnl|CDD|182718 PRK10773, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed | Back alignment and domain information |
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>gnl|CDD|184752 PRK14573, PRK14573, bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 497 | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopime | ||
TIGR01085 | 494 | murE UDP-N-acetylmuramyl-tripeptide synthetases; InterP | 100.0 | |
PRK11929 | 953 | putative bifunctional UDP-N-acetylmuramoylalanyl-D-glut | 100.0 | |
COG0769 | 475 | MurE UDP-N-acetylmuramyl tripeptide synthase [Cell enve | 100.0 | |
PRK11930 | 824 | putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D | 100.0 | |
TIGR01081 | 459 | mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso | 100.0 | |
PRK00139 | 481 | murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin | 100.0 | |
PRK11929 | 953 | putative bifunctional UDP-N-acetylmuramoylalanyl-D-glut | 100.0 | |
PRK10773 | 452 | murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanin | 100.0 | |
TIGR01143 | 462 | murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanin | 100.0 | |
COG0770 | 451 | MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell en | 100.0 | |
TIGR01087 | 476 | murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; I | 100.0 | |
TIGR02068 | 876 | cya_phycin_syn cyanophycin synthetase; InterPro: IPR011 | 100.0 | |
PRK00421 | 459 | murC UDP-N-acetylmuramate--L-alanine ligase; Provisiona | 100.0 | |
PRK02006 | 501 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK03369 | 487 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
TIGR01082 | 491 | murC UDP-N-acetylmuramate--alanine ligase; InterPro: IP | 100.0 | |
PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK00141 | 476 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
COG0773 | 459 | MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope | 100.0 | |
PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK02472 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK01368 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK01390 | 457 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK01438 | 481 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Ce | 100.0 | |
PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
PRK10846 | 416 | bifunctional folylpolyglutamate synthase/ dihydrofolate | 100.0 | |
PRK03815 | 401 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 100.0 | |
COG0285 | 427 | FolC Folylpolyglutamate synthase [Coenzyme metabolism] | 100.0 | |
). A crystal structure of the MgATP complex of the enzyme from Lactobacillus casei reveals that folylpolyglutamate synthetase is a modular protein consisting of two domains, one with a typical mononucleotide-binding fold and the other strikingly similar to the folate-binding enzyme dihydrofolate reductase. The active site of the enzyme is located in a large interdomain cleft adjacent to an ATP-binding P-loop motif. Opposite this site, in the C domain, a cavity likely to be the folate binding site has been identified, and inspection of this cavity and the surrounding protein structure suggests that the glutamate tail of the substrate may project into the active site. A further feature of the structure is a well defined Omega loop, which contributes both to the active site and to interdomain interactions .; GO: 0004326 tetrahydrofolylpolyglutamate synthase activity, 0005524 ATP binding, 0009396 folic acid and derivative biosynthetic process." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=TIGR01499">TIGR01499 | 460 | folC FolC bifunctional protein; InterPro: IPR001645 Fol | 100.0 | |
KOG2525 | 496 | consensus | 99.93 | |
pfam08245 | 188 | Mur_ligase_M Mur ligase middle domain. | 100.0 | |
pfam02875 | 87 | Mur_ligase_C Mur ligase family, glutamate ligase domain | 99.88 | |
PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 94.83 | |
PRK05703 | 412 | flhF flagellar biosynthesis regulator FlhF; Validated | 93.5 | |
PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 90.8 | |
pfam01225 | 76 | Mur_ligase Mur ligase family, catalytic domain. This fa | 99.74 | |
pfam04613 | 72 | LpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltra | 94.83 | |
COG1044 | 338 | LpxD UDP-3-O-[3-hydroxymyristoyl] | 91.52 | |
TIGR01853 | 336 | lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N | 90.11 | |
PRK05439 | 312 | pantothenate kinase; Provisional | 97.38 | |
PRK00892 | 343 | lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltra | 97.2 | |
COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and relat | 96.61 | |
pfam03308 | 267 | ArgK ArgK protein. The ArgK protein acts as an ATPase e | 94.1 | |
TIGR00750 | 333 | lao LAO/AO transport system ATPase; InterPro: IPR005129 | 93.92 | |
PRK09435 | 325 | arginine/ornithine transport system ATPase; Provisional | 93.1 | |
COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility and s | 94.8 | |
COG2894 | 272 | MinD Septum formation inhibitor-activating ATPase [Cell | 94.71 | |
TIGR01968 | 272 | minD_bact septum site-determining protein MinD; InterPr | 91.51 | |
TIGR03453 | 387 | partition_RepA plasmid partitioning protein RepA. Membe | 91.34 | |
cd02029 | 277 | PRK_like Phosphoribulokinase-like (PRK-like) is a famil | 90.97 | |
cd02028 | 179 | UMPK_like Uridine monophosphate kinase_like (UMPK_like) | 90.63 | |
PRK13869 | 405 | plasmid-partitioning protein RepA; Provisional | 90.18 | |
COG1072 | 283 | CoaA Panthothenate kinase [Coenzyme metabolism] | 93.4 | |
PRK06995 | 404 | flhF flagellar biosynthesis regulator FlhF; Validated | 92.26 | |
PRK09841 | 726 | cryptic autophosphorylating protein tyrosine kinase Etk | 91.99 | |
PRK00409 | 780 | recombination and DNA strand exchange inhibitor protein | 91.63 | |
PRK09426 | 715 | methylmalonyl-CoA mutase; Reviewed | 91.75 | |
TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 90.8 | |
TIGR00692 | 341 | tdh L-threonine 3-dehydrogenase; InterPro: IPR004627 L- | 90.75 |
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetases; InterPro: IPR005761 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment | Back alignment and domain information |
---|
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional | Back alignment and domain information |
---|
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
---|
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional | Back alignment and domain information |
---|
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase; InterPro: IPR005757 The tripeptide L-ananyl-gamma-D-glutamyl-meso-diaminopimelic acid is efficiently re-cycled during the formation of bacterial cell wall murein | Back alignment and domain information |
---|
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional | Back alignment and domain information |
---|
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional | Back alignment and domain information |
---|
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed | Back alignment and domain information |
---|
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; InterPro: IPR005863 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment | Back alignment and domain information |
---|
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
---|
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; InterPro: IPR005762 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment | Back alignment and domain information |
---|
>TIGR02068 cya_phycin_syn cyanophycin synthetase; InterPro: IPR011810 Cyanophycin is an insoluble storage polymer for carbon, nitrogen, and energy, found in most Cyanobacteria | Back alignment and domain information |
---|
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
---|
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase; InterPro: IPR005758 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment | Back alignment and domain information |
---|
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
---|
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
---|
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional | Back alignment and domain information |
---|
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism] | Back alignment and domain information |
---|
>TIGR01499 folC FolC bifunctional protein; InterPro: IPR001645 Folylpolyglutamate synthase 6 | Back alignment and domain information |
---|
>KOG2525 consensus | Back alignment and domain information |
---|
>pfam08245 Mur_ligase_M Mur ligase middle domain | Back alignment and domain information |
---|
>pfam02875 Mur_ligase_C Mur ligase family, glutamate ligase domain | Back alignment and domain information |
---|
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
---|
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
---|
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
---|
>pfam01225 Mur_ligase Mur ligase family, catalytic domain | Back alignment and domain information |
---|
>pfam04613 LpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD | Back alignment and domain information |
---|
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl] | Back alignment and domain information |
---|
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; InterPro: IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (2 | Back alignment and domain information |
---|
>PRK05439 pantothenate kinase; Provisional | Back alignment and domain information |
---|
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional | Back alignment and domain information |
---|
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
---|
>pfam03308 ArgK ArgK protein | Back alignment and domain information |
---|
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
---|
>PRK09435 arginine/ornithine transport system ATPase; Provisional | Back alignment and domain information |
---|
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
---|
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning] | Back alignment and domain information |
---|
>TIGR01968 minD_bact septum site-determining protein MinD; InterPro: IPR010223 This entry describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum | Back alignment and domain information |
---|
>TIGR03453 partition_RepA plasmid partitioning protein RepA | Back alignment and domain information |
---|
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes | Back alignment and domain information |
---|
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
---|
>PRK13869 plasmid-partitioning protein RepA; Provisional | Back alignment and domain information |
---|
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism] | Back alignment and domain information |
---|
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
---|
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional | Back alignment and domain information |
---|
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
---|
>PRK09426 methylmalonyl-CoA mutase; Reviewed | Back alignment and domain information |
---|
>TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
---|
>TIGR00692 tdh L-threonine 3-dehydrogenase; InterPro: IPR004627 L-threonine 3-dehydrogenase (1 | Back alignment and domain information |
---|
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 497 | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopime | ||
1e8c_A | 498 | Structure Of Mure The Udp-N-Acetylmuramyl Tripeptid | 6e-79 | |
2wtz_A | 535 | Mure Ligase Of Mycobacterium Tuberculosis Length = | 8e-75 | |
2am1_A | 454 | Sp Protein Ligand 1 Length = 454 | 4e-18 | |
1gg4_A | 452 | Crystal Structure Of Escherichia Coli Udpmurnac-Tri | 3e-29 | |
3lk7_A | 451 | The Crystal Structure Of Udp-N-Acetylmuramoylalanin | 2e-05 | |
1o5z_A | 442 | Crystal Structure Of Folylpolyglutamate Synthase (T | 2e-04 | |
1e0d_A | 437 | Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase L | 0.002 | |
2jff_A | 445 | Crystal Structure Of Murd Ligase In Complex With D- | 0.002 | |
2wjp_A | 439 | Crystal Structure Of Murd Ligase In Complex With D- | 0.002 | |
2uag_A | 437 | Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase L | 0.002 | |
1gqq_A | 475 | Murc - Crystal Structure Of The Apo-Enzyme From Hae | 2e-04 | |
1j6u_A | 469 | Crystal Structure Of Udp-N-Acetylmuramate-Alanine L | 0.002 | |
1w78_A | 422 | E.Coli Folc In Complex With Dhpp And Adp Length = 4 | 0.003 |
>gi|15988379|pdb|1E8C|A Chain A, Structure Of Mure The Udp-N-Acetylmuramyl Tripeptide Synthetase From E. Coli Length = 498 | Back alignment and structure |
Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 170/505 (33%), Positives = 246/505 (48%), Gaps = 25/505 (4%) Query: 2 KLQDLIYKDFPELINQLSIFPMQWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIP 61 L+DL+ P+ R + E + DSR AG +FVA+VG++ DG +IP Sbjct: 4 NLRDLLAPWVPD-----------APSRALREXTLDSRVAAAGDLFVAVVGHQADGRRYIP 52 Query: 62 QAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLSLFASRLYGKHPENI--LA 119 QAIAQG AI+ + D P++ + + LS A R Y + +N+ + Sbjct: 53 QAIAQGVAAIIAEAKDEATDGEIREXHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVG 112 Query: 120 VTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLS 178 VTGT+GK++ + Q Q G S G TT S + + L+ L Sbjct: 113 VTGTNGKTTTTQLLAQWSQLLGEISAVXGTVGNGLLGKVIPTENTTGSAVDVQHELAGLV 172 Query: 179 SQGVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELL 238 QG T + E SSHGL QHR+ +K A FTNL RDH+DYH + Y A L+ E Sbjct: 173 DQGATFCAXEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDXEHYEAAXWLLYSE-- 230 Query: 239 PKESPAIIYADDAYSKEVMKRAHNAGC----RVLSVGYQGKFIHLKKVCAIHNKQQVTIS 294 AII ADD + + + +A ++ G+++ +V + + S Sbjct: 231 HHCGQAIINADDEVGRRWLAKLPDAVAVSXEDHINPNCHGRWLKATEVNYHDSGATIRFS 290 Query: 295 VEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSR 354 D + L G F V N L+A +A+G A +L+ +L V GR E T Sbjct: 291 SSWGDGEIESHLXGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRXEVF-TAPG 349 Query: 355 GGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAI 414 + VDYAHT ++LE L+ R +G++ VFGCGGDRD+GKRP+ G IA + AD+A+ Sbjct: 350 KPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLXGAIAEEFADVAV 409 Query: 415 VTDDNPRSEDPEKIRAEIIHG---IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHET 471 VTDDNPR+E+P I +I+ G R EA+ A+ + DV++VAGKGHE Sbjct: 410 VTDDNPRTEEPRAIINDILAGXLDAGHAKVXEGRAEAVTCAVXQAKENDVVLVAGKGHED 469 Query: 472 VHIVTNGEKKMSVDCDIIREILGLI 496 IV N D + +LG+I Sbjct: 470 YQIVGNQRLDY-SDRVTVARLLGVI 493 |
>gi|281306936|pdb|2WTZ|A Chain A, Mure Ligase Of Mycobacterium Tuberculosis Length = 535 | Back alignment and structure |
>gi|88192084|pdb|2AM1|A Chain A, Sp Protein Ligand 1 Length = 454 | Back alignment and structure |
>gi|12084404|pdb|1GG4|A Chain A, Crystal Structure Of Escherichia Coli Udpmurnac-Tripeptide D-Alanyl-D-Alanine-Adding Enzyme (Murf) At 2.3 Angstrom Resolution Length = 452 | Back alignment and structure |
>gi|288563201|pdb|3LK7|A Chain A, The Crystal Structure Of Udp-N-Acetylmuramoylalanine-D- Glutamate (Murd) Ligase From Streptococcus Agalactiae To 1.5a Length = 451 | Back alignment and structure |
>gi|39654293|pdb|1O5Z|A Chain A, Crystal Structure Of Folylpolyglutamate Synthase (Tm0166) From Thermotoga Maritima At 2.10 A Resolution Length = 442 | Back alignment and structure |
>gi|9257128|pdb|1E0D|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase Length = 437 | Back alignment and structure |
>gi|149242346|pdb|2JFF|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu Containing Sulfonamide Inhibitor Length = 445 | Back alignment and structure |
>gi|304445552|pdb|2WJP|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu Containing Rhodanine Inhibitor Length = 439 | Back alignment and structure |
>gi|7245651|pdb|2UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase Length = 437 | Back alignment and structure |
gi|33356936|pdb|1GQQ|A Chain A, Murc - Crystal Structure Of The Apo-Enzyme From Haemophilus Influenzae Length = 475 | Back alignment and structure |
>gi|24987384|pdb|1J6U|A Chain A, Crystal Structure Of Udp-N-Acetylmuramate-Alanine Ligase Murc (Tm0231) From Thermotoga Maritima At 2.3 A Resolution Length = 469 | Back alignment and structure |
>gi|61680167|pdb|1W78|A Chain A, E.Coli Folc In Complex With Dhpp And Adp Length = 422 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 497 | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopime | ||
1e8c_A | 498 | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopim | 2e-97 | |
2wtz_A | 535 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diamino | 2e-82 | |
1gg4_A | 452 | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimel | 2e-54 | |
1j6u_A | 469 | UDP-N-acetylmuramate-alanine ligase MURC; structural ge | 3e-34 | |
2am1_A | 454 | SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysi | 6e-30 | |
3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalac | 2e-26 | |
3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, str | 6e-40 | |
1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta protei | 5e-33 | |
2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-bi | 9e-25 | |
2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond liga | 1e-23 | |
3nrs_A | 437 | Dihydrofolate:folylpolyglutamate synthetase; structural | 1e-34 | |
1jbw_A | 428 | Folylpolyglutamate synthase; FPGS folate AMPPCP ternary | 8e-29 | |
1o5z_A | 442 | Folylpolyglutamate synthase/dihydrofolate synthase; TM0 | 2e-28 | |
1w78_A | 422 | FOLC bifunctional protein; DHFS, dihydrofolate synthase | 5e-22 | |
2vos_A | 487 | Folylpolyglutamate synthase protein FOLC; ligase, confo | 3e-20 | |
3mvn_A | 163 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diami | 1e-17 | |
2jfg_A | 445 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; nucleo | 4e-10 | |
3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- MESO-di | 1e-08 |
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.0A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 498 | Back alignment and structure |
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Score = 351 bits (902), Expect = 2e-97 Identities = 165/480 (34%), Positives = 246/480 (51%), Gaps = 14/480 (2%) Query: 27 ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86 R + E++ DSR AG +FVA+VG++ DG +IPQAIAQG AI+ + D Sbjct: 18 SRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIRE 77 Query: 87 RSNTPILVVDNTRKFLSLFASRLYGKHPENI--LAVTGTSGKSSVASFVQQICQRSGLSS 144 P++ + + LS A R Y + +N+ + VTGT+GK++ + Q Q G S Sbjct: 78 MHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEIS 137 Query: 145 FQIG-PTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIK 203 +G + + TT S + + L+ L QG T ++E SSHGL QHR+ +K Sbjct: 138 AVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALK 197 Query: 204 LIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNA 263 A FTNL RDH+DYH + Y AK L+ AII ADD + + + +A Sbjct: 198 FAASVFTNLSRDHLDYHGDMEHYEAAKWLLYS--EHHCGQAIINADDEVGRRWLAKLPDA 255 Query: 264 ----GCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAA 319 ++ G+++ +V + + S D + L G F V N L+A Sbjct: 256 VAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLAL 315 Query: 320 GLCIAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTI 379 +A+G A +L+ +L V GR E + VDYAHT ++LE L+ R Sbjct: 316 ATLLALGYPLADLLKTAARLQPVCGRMEVFTAP-GKPTVVVDYAHTPDALEKALQAARLH 374 Query: 380 TSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHGIPGF 439 +G++ VFGCGGDRD+GKRP+MG IA + AD+A+VTDDNPR+E+P I +I+ G+ Sbjct: 375 CAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDA 434 Query: 440 IEK---GNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496 R EA+ A+ + DV++VAGKGHE IV ++ D + +LG+I Sbjct: 435 GHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIV-GNQRLDYSDRVTVARLLGVI 493 |
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, cytoplasm; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} Length = 535 | Back alignment and structure |
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>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 452 | Back alignment and structure |
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>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 Length = 469 | Back alignment and structure |
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>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase, MURF protein...; HET: 1LG; 2.50A {Streptococcus pneumoniae R6} PDB: 2am2_A* Length = 454 | Back alignment and structure |
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>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} Length = 451 | Back alignment and structure |
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>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} Length = 524 | Back alignment and structure |
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>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* Length = 475 | Back alignment and structure |
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>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2jfg_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* Length = 439 | Back alignment and structure |
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>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} Length = 491 | Back alignment and structure |
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>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* Length = 437 | Back alignment and structure |
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>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A Length = 428 | Back alignment and structure |
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>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthase; TM0166, structural genomics, JCSG, PSI, protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2 Length = 442 | Back alignment and structure |
---|
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A* Length = 422 | Back alignment and structure |
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>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, conformational change, peptidoglycan synthesis, cell division, cobalt binding; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A* Length = 487 | Back alignment and structure |
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>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi} Length = 163 | Back alignment and structure |
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>2jfg_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; nucleotide-binding, peptidoglycan synthesis, MURD ligase, ATP-binding, cell division, UMA, ADP; HET: KCX UMA ADP; 1.52A {Escherichia coli} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* Length = 445 | Back alignment and structure |
---|
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- MESO-diaminopimelate ligase; structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis MC58} Length = 326 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 497 | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopime | ||
1e8c_A | 498 | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopim | 100.0 | |
2wtz_A | 535 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diamino | 100.0 | |
3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalac | 100.0 | |
1j6u_A | 469 | UDP-N-acetylmuramate-alanine ligase MURC; structural ge | 100.0 | |
1gg4_A | 452 | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimel | 100.0 | |
2am1_A | 454 | SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysi | 100.0 | |
2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-bi | 100.0 | |
3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, str | 100.0 | |
2vos_A | 487 | Folylpolyglutamate synthase protein FOLC; ligase, confo | 100.0 | |
2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond liga | 100.0 | |
1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta protei | 100.0 | |
1o5z_A | 442 | Folylpolyglutamate synthase/dihydrofolate synthase; TM0 | 100.0 | |
3nrs_A | 437 | Dihydrofolate:folylpolyglutamate synthetase; structural | 100.0 | |
1jbw_A | 428 | Folylpolyglutamate synthase; FPGS folate AMPPCP ternary | 100.0 | |
1w78_A | 422 | FOLC bifunctional protein; DHFS, dihydrofolate synthase | 100.0 | |
3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- MESO-di | 100.0 | |
3mvn_A | 163 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diami | 99.84 | |
2xij_A | 762 | Methylmalonyl-COA mutase, mitochondrial; isomerase, org | 93.73 | |
1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU ADP; | 95.34 | |
1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2.50A { | 93.88 | |
3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose transport | 93.83 | |
3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA biosyn | 93.41 | |
1byi_A | 224 | Dethiobiotin synthase; biotin synthesis, cyclo-ligase, | 92.81 | |
1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural genomi | 92.54 | |
2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54); rib | 92.41 | |
3cio_A | 299 | ETK, tyrosine-protein kinase ETK; WZC, escherichia coli | 92.28 | |
3end_A | 307 | Light-independent protochlorophyllide reductase iron-su | 91.8 | |
3fgn_A | 251 | Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP | 90.55 | |
3la6_A | 286 | Tyrosine-protein kinase WZC; P-loop protein, nucleotide | 90.42 | |
3eh0_A | 341 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransfe | 93.61 | |
2iu8_A | 374 | LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr | 90.75 |
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 | Back alignment and structure |
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Probab=100.00 E-value=0 Score=745.62 Aligned_cols=469 Identities=35% Similarity=0.509 Sum_probs=412.9 Q ss_pred CCCCCCEEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHH Q ss_conf 55574300245302314689889980388767688899999859889998473223334322347970999799899999 Q gi|254781102|r 24 QWRERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATIRSNTPILVVDNTRKFLS 103 (497) Q Consensus 24 ~~~d~~i~~i~~DSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~~~~~~~~~~~~p~i~V~d~~~aL~ 103 (497) ...+++|++|++|||+|+||||||||+|+++|||+|+++|+++||+++|++++.+..........++|+++|+|++++|+ T Consensus 15 ~~~~~~i~~i~~DSR~v~~g~lFval~G~~~DGh~fi~~A~~~GA~~vv~~~~~~~~~~~~~~~~~~~~i~V~d~~~aL~ 94 (498) T 1e8c_A 15 DAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLS 94 (498) T ss_dssp TCCCCBCCCEESCGGGCCTTCEEEECBCSSCBGGGGHHHHHHTTCSEEEEECTTTCCTTCEEEETTEEEEEETTHHHHHH T ss_pred CCCCCEECCEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCCCEEEECCHHHHHH T ss_conf 99887379278506758999789990468888899999999879969998075334541010037985899899999999 Q ss_pred HHHHHHHCCCCC--CEEEEEEEECCCEEHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHCCC Q ss_conf 999998276200--224565430652000123333321023222223454433-23554457675312211111110112 Q gi|254781102|r 104 LFASRLYGKHPE--NILAVTGTSGKSSVASFVQQICQRSGLSSFQIGPTSTIS-SFAQDNRLTTPSPIYLAKALSYLSSQ 180 (497) Q Consensus 104 ~la~~~~~~~~~--~vIgITGTnGKTTt~~~l~~iL~~~g~~~~~~g~~~~~~-~~~~~~~~TtP~~~~l~~~l~~~~~~ 180 (497) +||++||++++. ++||||||||||||++|++++|+..+.+++..|+.++.. ........++|++..++.+|..+.+. T Consensus 95 ~la~~~~~~~~~~~~vIgITGSnGKTTT~~~l~~iL~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 174 (498) T 1e8c_A 95 ALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQ 174 (498) T ss_dssp HHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTEEEETTCCBCCSSSSCCHHHHHHHHHHHHHT T ss_pred HHHHHHHCCCCCCCCEEEEECCCCCCCEEECCHHHHHHCCCCCEECCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHC T ss_conf 99999855733367189997899980006460004554375300025400134752245578787356789999998856 Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHC Q ss_conf 23333356676665554310432121112321545543211011223455421000000122321112542000122210 Q gi|254781102|r 181 GVTHVSVEASSHGLDQHRLDGIKLIAGSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRA 260 (497) Q Consensus 181 g~~~~vlEvSS~gl~~~rl~~i~~diaviTNI~~dHLd~~gs~e~y~~aK~~If~~~~~~~~~~ViN~Dd~~~~~l~~~~ 260 (497) +++++++|+||+|+.+.++..++|+++|||||++||||+|||+++|+++|.++|.. ++.+.+|+|.||++...+.+.. T Consensus 175 ~~~~~~~e~s~~g~~~~~~~~~~p~iaviTNI~~dHl~~~gs~e~~~~aK~~i~~~--~~~g~~vln~Dd~~~~~~~~~~ 252 (498) T 1e8c_A 175 GATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE--HHCGQAIINADDEVGRRWLAKL 252 (498) T ss_dssp TCCEEEEECCHHHHHTTTTTTCBCSEEEECCCCSCCHHHHSSHHHHHHHHHHHHHT--SBCCEEEEETTSHHHHHHHTTC T ss_pred CCCEEEEECCCCCHHHHHHCCCCCCEEEEECCCHHHCCCCCCHHHHHHHHHHHHHH--CCCCEEEEECCCHHHHHHHHHC T ss_conf 99299990698364556407688888999489778767568836767788886530--3677289935867887777650 Q ss_pred CCCCCCCCCCCC----CCCCCCCCEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 235653222223----3332200000014544432112221001012234332221105778887752026767631112 Q gi|254781102|r 261 HNAGCRVLSVGY----QGKFIHLKKVCAIHNKQQVTISVEGKDFDFLFPLPGEFQVYNALVAAGLCIAIGIDSALVLEHL 336 (497) Q Consensus 261 ~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~l~G~hni~NalaAia~a~~lGi~~~~i~~~L 336 (497) ..........+. .........+.....+..+.+..+++.+++.++++|.||++|+++|++++..+|++++++.+++ T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~l~G~hnv~NalaAia~a~~lg~~~~~i~~~l 332 (498) T 1e8c_A 253 PDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTA 332 (498) T ss_dssp TTCEEEESSSCCCTTTCSEEEEEEEEEECSSCEEEEEEETTCCEEEEECSCSHHHHHHHHHHHHHHHHTTCCHHHHHHHG T ss_pred CCCEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHH T ss_conf 46258863145675433420000246522665201100467643688751273799999999999976221258999999 Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCEEEEC Q ss_conf 34433455210001355786023000378689999741211002344403540266546004689999998619899990 Q gi|254781102|r 337 EKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKNIRTITSGRIIVVFGCGGDRDQGKRPIMGKIALDLADIAIVT 416 (497) Q Consensus 337 ~~f~~~~gR~E~i~~~~~~~~viiDyahNP~s~~~aL~~l~~~~~~r~i~V~G~~Gdrd~~kr~~mg~~a~~~ad~vi~t 416 (497) .+|++++||||.+... ++..+++||||||+||+++++++++++++|+++|+|+||+|+..+|++|++++.+++|.+|+| T Consensus 333 ~~~~~~~gR~e~~~~~-~~~~iidDy~~np~s~~a~l~~l~~~~~~rii~v~g~~g~~~~~~~~~~~~~a~~~~d~vilt 411 (498) T 1e8c_A 333 ARLQPVCGRMEVFTAP-GKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVT 411 (498) T ss_dssp GGCCCCTTSSEEECCT-TSCEEEEECCCSHHHHHHHHHHHHHTCSSCEEEEECCCSSSCSTHHHHHHHHHHHHCSEEEEC T ss_pred HHCCCCCCCEEEEEEC-CCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEC T ss_conf 7458989972899938-954999942799299999999988656998899988766665215589999998559999999 Q ss_pred CCCCCCCCHHHHHHHHHHCCC---CEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCCEECCCCHHHHHHHHH Q ss_conf 887989898999999983479---80997898999999999658988999944688663584497886799899999984 Q gi|254781102|r 417 DDNPRSEDPEKIRAEIIHGIP---GFIEKGNRIEAIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREIL 493 (497) Q Consensus 417 ~d~~r~e~~~~I~~~i~~g~~---~~~~~~dr~eAi~~A~~~a~~gDvili~GkG~e~~~~~~~~~~~~~~d~~~~~~~l 493 (497) +|+||+|+|..|+.++.+++. ++..+.|+.||++.|.++++|||+|||+|||||+||++. +.+.||+||++|||+| T Consensus 412 ~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~d~~eAi~~a~~~a~~gDvVLi~G~G~e~~~~~~-~~~~~f~d~~~~~~~~ 490 (498) T 1e8c_A 412 DDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVG-NQRLDYSDRVTVARLL 490 (498) T ss_dssp CSCCBTSCHHHHHHHHHTTSSCGGGSEECSCHHHHHHHHHHHSCTTCEEEEESCTTCCEEEET-TEEEECCHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEC-CEEECCCHHHHHHHHH T ss_conf 878787798999999985676778879968999999999984899899999478887849989-9986898699999999 Q ss_pred HHH Q ss_conf 430 Q gi|254781102|r 494 GLI 496 (497) Q Consensus 494 ~~~ 496 (497) +.+ T Consensus 491 ~~~ 493 (498) T 1e8c_A 491 GVI 493 (498) T ss_dssp TSC T ss_pred HHH T ss_conf 888 |
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, cytoplasm; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
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>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
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>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 | Back alignment and structure |
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>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 | Back alignment and structure |
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>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine ligase, MURF protein...; HET: 1LG; 2.50A {Streptococcus pneumoniae R6} PDB: 2am2_A* | Back alignment and structure |
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>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2jfg_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
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>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
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