254781222
hypothetical protein CLIBASIA_05645
| GeneID in NCBI database: | 8210247 | Locus tag: | CLIBASIA_05645 |
| Protein GI in NCBI database: | 254781222 | Protein Accession: | YP_003065635.1 |
| Gene range: | +(1222101, 1222313) | Protein Length: | 70aa |
| Gene description: | hypothetical protein | ||
| COG prediction: | none | ||
| KEGG prediction: | hypothetical protein | ||
| SEED prediction: | hypothetical protein | ||
| Pathway involved in KEGG: | not defined | ||
| Subsystem involved in SEED: | - none - | ||
| sequence | sequence profile | ||
Prediction of Local Sequence Properties
| Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
| Identity | Alignment graph | Length | Definition | Round | E-value |
| Target | 70 | hypothetical protein CLIBASIA_05645 [Candidatus Liberib | |||
| 163868226 | 257 | hypothetical protein Btr_1055 [Bartonella tribocorum CI | 1 | 4e-04 | |
| 163868186 | 257 | hypothetical protein Btr_1004 [Bartonella tribocorum CI | 1 | 4e-04 | |
| 163659869 | 257 | hypothetical protein PlasmidBtr_0010 [Bartonella triboc | 1 | 4e-04 | |
| 163868264 | 257 | hypothetical protein Btr_1102 [Bartonella tribocorum CI | 1 | 4e-04 | |
| 163868200 | 211 | hypothetical protein Btr_1020 [Bartonella tribocorum CI | 1 | 6e-04 | |
| 163867446 | 197 | hypothetical protein Btr_0166 [Bartonella tribocorum CI | 1 | 7e-04 | |
| 163659871 | 213 | phage related protein [Bartonella tribocorum CIP 105476 | 1 | 0.001 | |
| 163868210 | 213 | hypothetical protein Btr_1034 [Bartonella tribocorum CI | 1 | 0.001 | |
| 319404492 | 525 | conserved hypothetical protein [Bartonella rochalimae A | 1 | 0.002 | |
| 49475171 | 127 | Phage related protein [Bartonella henselae str. Houston | 1 | 0.004 |
| >gi|163868226|ref|YP_001609434.1| hypothetical protein Btr_1055 [Bartonella tribocorum CIP 105476] Length = 257 | Back alignment and organism information |
|---|
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/39 (58%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 30 MTKKYKITKEEHRVFS-ECHRIRALRGFNDVKKGALGGF 67
++KKY++T E H HRIRALR F+DVK GALGGF
Sbjct: 6 VSKKYELTNENHTFEGITVHRIRALRDFDDVKAGALGGF 44
|
Species: Bartonella tribocorum Genus: Bartonella Family: Bartonellaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|163868186|ref|YP_001609394.1| hypothetical protein Btr_1004 [Bartonella tribocorum CIP 105476] Length = 257 | Back alignment and organism information |
|---|
| >gi|163659869|ref|YP_001608492.1| hypothetical protein PlasmidBtr_0010 [Bartonella tribocorum CIP 105476] Length = 257 | Back alignment and organism information |
|---|
| >gi|163868264|ref|YP_001609473.1| hypothetical protein Btr_1102 [Bartonella tribocorum CIP 105476] Length = 257 | Back alignment and organism information |
|---|
| >gi|163868200|ref|YP_001609408.1| hypothetical protein Btr_1020 [Bartonella tribocorum CIP 105476] Length = 211 | Back alignment and organism information |
|---|
| >gi|163867446|ref|YP_001608645.1| hypothetical protein Btr_0166 [Bartonella tribocorum CIP 105476] Length = 197 | Back alignment and organism information |
|---|
| >gi|163659871|ref|YP_001608494.1| phage related protein [Bartonella tribocorum CIP 105476] Length = 213 | Back alignment and organism information |
|---|
| >gi|163868210|ref|YP_001609418.1| hypothetical protein Btr_1034 [Bartonella tribocorum CIP 105476] Length = 213 | Back alignment and organism information |
|---|
| >gi|319404492|emb|CBI78099.1| conserved hypothetical protein [Bartonella rochalimae ATCC BAA-1498] Length = 525 | Back alignment and organism information |
|---|
| >gi|49475171|ref|YP_033212.1| Phage related protein [Bartonella henselae str. Houston-1] Length = 127 | Back alignment and organism information |
|---|
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLAST against CDD database part II
No hit with e-value below 0.005
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
No hit with probability above 90.00
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
No homologous structure with e-value below 0.005
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 70 | hypothetical protein CLIBASIA_05645 [Candidatus Liberib | ||
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural geno | 9e-08 |
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A Length = 334 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 9e-08
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 11/46 (23%)
Query: 32 KKYKITKEEHRVFSEC----------HRIRALRGFNDVKKGALGGF 67
KY+++ E R F+ ++ A+ FNDVK G GG+
Sbjct: 2 TKYRLS-EGPRAFTYQVDGEKKSVLLRQVIAVTDFNDVKAGTSGGW 46
|
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 70 | hypothetical protein CLIBASIA_05645 [Candidatus Liberib | ||
| 2pig_A | 334 | Putative transferase; SCR6, NESG, YDCK, structural geno | 97.13 |
| >2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A | Back alignment and structure |
|---|
Probab=97.13 E-value=1.5e-05 Score=48.64 Aligned_cols=37 Identities=35% Similarity=0.686 Sum_probs=28.6
Q ss_pred HHHHHCHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 44210489999999----------988888763321433211001101
Q gi|254781222|r 32 KKYKITKEEHRVFS----------ECHRIRALRGFNDVKKGALGGFYR 69 (70)
Q Consensus 32 kkykitkeehrvfs----------echriralrgfndvkkgalggfyr 69 (70)
|||.+|.|. |.|+ .-+||||||-|.|||+|.||||-.
T Consensus 2 ~ky~~~~~~-~~~~~~~~~~~~~~~l~~i~a~~~~~~v~~g~~gg~~~ 48 (334)
T 2pig_A 2 TKYRLSEGP-RAFTYQVDGEKKSVLLRQVIAVTDFNDVKAGTSGGWVD 48 (334)
T ss_dssp -CEEECSSC-EEEEEEETTEEEEEEEEEEEESSCBTTBCTTCEEEEES
T ss_pred CCEEECCCC-CEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCCCEEE
T ss_conf 716823542-02255406762761599999972206422677765558
|
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| Identity | Alignment graph | Length | Definition | E-value |
| 70 | hypothetical protein CLIBASIA_05645 [Candidatus Liberib | |||
| d2f9ca1 | 320 | b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonell | 1e-07 |
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Score = 49.1 bits (116), Expect = 1e-07
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 31 TKKYKITKEEHRVFSECHRIRALRGFNDVKKGALGGF 67
+ + + + ++ A+ FNDVK G GG+
Sbjct: 8 PRAFTYQVDGEKKSVLLRQVIAVTDFNDVKAGTSGGW 44
|
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 70 | hypothetical protein CLIBASIA_05645 [Candidatus Liberib | ||
| d2f9ca1 | 320 | Hypothetical protein YdcK {Salmonella enterica [TaxId: | 96.87 |
| >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Single-stranded left-handed beta-helix superfamily: Trimeric LpxA-like enzymes family: YdcK-like domain: Hypothetical protein YdcK species: Salmonella enterica [TaxId: 28901]
Probab=96.87 E-value=1.8e-05 Score=46.97 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 988888763321433211001101
Q gi|254781222|r 46 ECHRIRALRGFNDVKKGALGGFYR 69 (70)
Q Consensus 46 echriralrgfndvkkgalggfyr 69 (70)
--|||||||.|.|||.|.||||-.
T Consensus 23 ~~~~~~a~~~~~~~~~~~~gg~~~ 46 (320)
T d2f9ca1 23 LLRQVIAVTDFNDVKAGTSGGWVD 46 (320)
T ss_dssp EEEEEEECSCCSSSCTTCEEEEES
T ss_pred EEEEEEEEECCCCCCCCCCCCEEE
T ss_conf 699999862205312688775435
|
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
No hit with e-value below 0.005
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
No hit with probability higher than 90.00