1s48_A

PDB Headers (abridged)

HEADER    REPLICATION, RNA BINDING PROTEIN        15-JAN-04   1S48              
TITLE     CRYSTAL STRUCTURE OF RNA-DEPENDENT RNA POLYMERASE CONSTRUCT           
TITLE    2 1 (RESIDUES 71-679) FROM BVDV                                        
COMPND   2 MOLECULE: RNA-DEPENDENT RNA POLYMERASE;                              
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    K.H.CHOI,J.M.GROARKE,D.C.YOUNG,R.J.KUHN,J.L.SMITH,                    
AUTHOR   2 D.C.PEVEAR,M.G.ROSSMANN

Sequence

> 1s48_A (A:) RNA-DEPENDENT RNA POLYMERASE
VIREHNKWILKKIRFQGNLNTKKMLNPGKLSEQLDREGRKRNIYNHQIGTIMSSAGIRLE
KLPIVRAQTDTKTFHEAIRDKIDKSENRQNPELHNKLLEIFHTIAQPTLKHTYGEVTWEQ
LEAGVNRKGAAGFLEKKNIGEVLDSEKHLVEQLVRDLKAGRKIKYYETAIPKNEKRDVSD
DWQAGDLVVEKRPRVIQYPEAKTRLAITKVMYNWVKQQPVVIPGYEGKTPLFNIFDKVRK
EWDSFNEPVAVSFDTKAWDTQVTSKDLQLIGEIQKYYYKKEWHKFIDTITDHMTEVPVIT
ADGEVYIRNGQRGSGQPDTSAGNSMLNVLTMMYAFCESTGVPYKSFNRVARIHVCGDDGF
LITEKGLGLKFANKGMQILHEAGKPQKITEGEKMKVAYRFEDIEFCSHTPVPVRWSDNTS
SHMAGRDTAVILSKMATRLDSSGERGTTAYEKAVAFSFLLMYSWNPLVRRICLLVLSQQP
ETDPSKHATYYYKGDPIGAYKDVIGRNLSELKRTGFEKLANLNLSLSTLGVWTKHTSKRI
IQDCVAIGKEEGNWLVKPDRLISSKTGHLYIPDKGFTLQGKHYEQLQL

Coordinates

Link to SCOP

Link to Pfam

Link to Protein Data Bank

Structural Domains (with extensions added by structural compactness)

1s48_A_str_1 (A: 92-312)

Sequence

> 1s48_A_str_1 (A: 92-312) RNA-DEPENDENT RNA POLYMERASE
VIREHNKWILKKIRFQGNLNTKKMLNPGKLSEQLDREGRKRNIYNHQIGTIMSSAGIRLE
KLPIVRAQTDTKTFHEAIRDKIDKSENRQNPELHNKLLEIFHTIAQPTLKHTYGEVTWEQ
LEAGVNRKGAAGFLEKKNIGEVLDSEKHLVEQLVRDLKAGRKIKYYETAIPKNEKRDVSD
DWQAGDLVVEKRPRVIQYPEAKTRLAITKVMYNWVKQQPVV

Coordinates

1s48_A_str_2 (A: 313-349, 415-501)

Sequence

> 1s48_A_str_2 (A: 313-349, 415-501) RNA-DEPENDENT RNA POLYMERASE
IPGYEGKTPLFNIFDKVRKEWDSFNEPVAVSFDTKAWSMLNVLTMMYAFCESTGVPYKSF
NRVARIHVCGDDGFLITEKGLGLKFANKGMQILHEAGKPQKITEGEKMKVAYRFEDIEFC
SHTP

Coordinates

1s48_A_str_3 (A: 350-414)

Sequence

> 1s48_A_str_3 (A: 350-414) RNA-DEPENDENT RNA POLYMERASE
DTQVTSKDLQLIGEIQKYYYKKEWHKFIDTITDHMTEVPVITADGEVYIRNGQRGSGQPD
TSAGN

Coordinates

1s48_A_str_4 (A: 502-679)

Sequence

> 1s48_A_str_4 (A: 502-679) RNA-DEPENDENT RNA POLYMERASE
VPVRWSDNTSSHMAGRDTAVILSKMATRLDSSGERGTTAYEKAVAFSFLLMYSWNPLVRR
ICLLVLSQQPETDPSKHATYYYKGDPIGAYKDVIGRNLSELKRTGFEKLANLNLSLSTLG
VWTKHTSKRIIQDCVAIGKEEGNWLVKPDRLISSKTGHLYIPDKGFTLQGKHYEQLQL

Coordinates

Structural Domains (with extensions added by sequence continuity)

1s48_A_seq_1 (A: 92-312)

Sequence

> 1s48_A_seq_1 (A: 92-312) RNA-DEPENDENT RNA POLYMERASE
VIREHNKWILKKIRFQGNLNTKKMLNPGKLSEQLDREGRKRNIYNHQIGTIMSSAGIRLE
KLPIVRAQTDTKTFHEAIRDKIDKSENRQNPELHNKLLEIFHTIAQPTLKHTYGEVTWEQ
LEAGVNRKGAAGFLEKKNIGEVLDSEKHLVEQLVRDLKAGRKIKYYETAIPKNEKRDVSD
DWQAGDLVVEKRPRVIQYPEAKTRLAITKVMYNWVKQQPVV

Coordinates

1s48_A_seq_2 (A: 313-349, 415-501)

Sequence

> 1s48_A_seq_2 (A: 313-349, 415-501) RNA-DEPENDENT RNA POLYMERASE
IPGYEGKTPLFNIFDKVRKEWDSFNEPVAVSFDTKAWSMLNVLTMMYAFCESTGVPYKSF
NRVARIHVCGDDGFLITEKGLGLKFANKGMQILHEAGKPQKITEGEKMKVAYRFEDIEFC
SHTP

Coordinates

1s48_A_seq_3 (A: 350-414)

Sequence

> 1s48_A_seq_3 (A: 350-414) RNA-DEPENDENT RNA POLYMERASE
DTQVTSKDLQLIGEIQKYYYKKEWHKFIDTITDHMTEVPVITADGEVYIRNGQRGSGQPD
TSAGN

Coordinates

1s48_A_seq_4 (A: 502-679)

Sequence

> 1s48_A_seq_4 (A: 502-679) RNA-DEPENDENT RNA POLYMERASE
VPVRWSDNTSSHMAGRDTAVILSKMATRLDSSGERGTTAYEKAVAFSFLLMYSWNPLVRR
ICLLVLSQQPETDPSKHATYYYKGDPIGAYKDVIGRNLSELKRTGFEKLANLNLSLSTLG
VWTKHTSKRIIQDCVAIGKEEGNWLVKPDRLISSKTGHLYIPDKGFTLQGKHYEQLQL

Coordinates

Extensions (N/C terminal extensions and linkers)

1s48_A_ext_1 (A: 135-158)

Sequence

> 1s48_A_ext_1 (A: 135-158) RNA-DEPENDENT RNA POLYMERASE
YNHQIGTIMSSAGIRLEKLPIVRA

Coordinates

1s48_A_ext_2 (A: 264-284)

Sequence

> 1s48_A_ext_2 (A: 264-284) RNA-DEPENDENT RNA POLYMERASE
NEKRDVSDDWQAGDLVVEKRP

Coordinates

Composite domains

1s48_A_cm_1 (* A:92-122 A:161-174 A:256-262 A:286-290 A:386-400)

Sequence

> 1s48_A_cm_1 (* A:92-122 A:161-174 A:256-262 A:286-290 A:386-400) RNA-DEPENDENT RNA POLYMERASE
DTKTFHEAIRDKIDYYETAIPVIQYPEVPVITADGEVYIRNVIREHNKWILKKIRFQGNL
NTKKMLNPGKLS

Coordinates

1s48_A_cm_2 (A: 154-158, 264-284)

Sequence

> 1s48_A_cm_2 (A: 154-158, 264-284) RNA-DEPENDENT RNA POLYMERASE
PIVRANEKRDVSDDWQAGDLVVEKRP

Coordinates

1s48_A_cm_3 (A: 159-263, 285-312, 350-414)

Sequence

> 1s48_A_cm_3 (A: 159-263, 285-312, 350-414) RNA-DEPENDENT RNA POLYMERASE
QTDTKTFHEAIRDKIDKSENRQNPELHNKLLEIFHTIAQPTLKHTYGEVTWEQLEAGVNR
KGAAGFLEKKNIGEVLDSEKHLVEQLVRDLKAGRKIKYYETAIPKRVIQYPEAKTRLAIT
KVMYNWVKQQPVVDTQVTSKDLQLIGEIQKYYYKKEWHKFIDTITDHMTEVPVITADGEV
YIRNGQRGSGQPDTSAGN

Coordinates