MUltiple alignment with Multiple MAtch state models of Local Structure

This program constructs a multiple sequence alignment given a set of protein sequences.

Reference: Jimin Pei and Nick V. Grishin. MUMMALS: multiple sequence alignment improved by using
hidden Markov models with local structural information. Nucleic Acids Res. 2006;34(16):4364-4374.

NEW PROGRAM! PROMALS - an improvement over MUMMALS

Enter query sequences in FASTA format:

Or file name:  
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Hidden Markov model options:

Identity threshold:


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Last modified: Wed May 10 15:10:00 CDT 2006