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A6NKT7_RGPD3 | RanBP2-like and GRIP domain-containing protein 3   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso A6NKT7 41 EYDLAKKYICTYINVRE CHHHHHHHHHHHHCCCC c1c-AT-4 boundary 0.0 NA
2 nes_ord A6NKT7 54 NVREMDPRAHRFLGLLY CCCCCCHHHHHHHHHHH c1c-AT-5 ORD 0.0 NA
3 nes_diso A6NKT7 146 GWNKLFDLIQSELYVRP CHHHHHHHHHHHHHCCC c1c-4 boundary 0.0 Weak: -30.723 Weak|
4 nes_diso A6NKT7 161 RPDDVHVNIRLVELYR CCCCHHHHHHHHHHHH c1a-4 boundary 0.0 Weak: -31.013 Weak|
5 nes_diso A6NKT7 163 DDVHVNIRLVELYR CCHHHHHHHHHHHH c2-4 boundary 0.0 Bad: -29.354
6 nes_diso A6NKT7 207 VVQTLKEYLESLQC HHHHHHHHHHHHHC c3-4 boundary 0.0 Weak: -31.556 Weak|
7 nes_diso A6NKT7 232 NTDLLLAYANLMLLTL HHHHHHHHHHHHHHHC c1a-AT-4 boundary 0.0 NA
8 nes_diso A6NKT7 234 DLLLAYANLMLLTLST HHHHHHHHHHHHHCCC c1a-AT-5 boundary 0.0 NA
9 nes_diso A6NKT7 278 ELSATFLEMKGHFYMHA HHHHHHHHHHHHHHHHH c1c-AT-5 boundary 0.0 NA
10 nes_diso A6NKT7 279 LSATFLEMKGHFYMHA HHHHHHHHHHHHHHHH c1d-4 boundary 0.0 NA
11 nes_diso A6NKT7 286 MKGHFYMHAGSLLLKM HHHHHHHHHHHHHHHH c1a-AT-4 boundary 0.0 NA
12 nes_diso A6NKT7 312 ALSELAALCYLIAFQV HHHHHHHHHHHHHHCC c1d-5 boundary 0.0 NA
13 nes_diso A6NKT7 314 SELAALCYLIAFQVPR HHHHHHHHHHHHCCCH c1a-AT-4 boundary 0.0 NA
14 nes_diso A6NKT7 315 ELAALCYLIAFQVPR HHHHHHHHHHHCCCH c1b-5 boundary 0.0 NA
15 nes_diso A6NKT7 450 ALPGIRKWLKQLFH CCCCHHHHHHHHHC c3-4 boundary 0.0 Bad: -24.7
16 nes_diso A6NKT7 479 SICILDLEVFLLGVVY HHHHHHHHHHHHHHHH c1a-5 boundary 0.0 Medium: -37.501 cosmic_phi_to_LIVMF Medium|
17 nes_diso A6NKT7 489 LLGVVYTSHLQLKE HHHHHHHHHHHHHH c2-AT-5 boundary 0.0 NA
18 nes_diso A6NKT7 582 CLQKMGSGLNSFYD HHHHHHCCCCCHHH c3-4 boundary 0.0 Bad: -27.822
19 nes_diso A6NKT7 626 PIDPLFKHFHSVDIQA CCCCCCCCCCCCCCCH c1a-5 boundary 0.0 Medium: -37.823 Medium|
20 nes_diso A6NKT7 653 VTFAILDAVNGNIEDAM HHHHHHHHHCCCHHHHH c1cR-4 boundary 0.0 Bad: -22.26
21 nes_diso A6NKT7 732 VVKKLPVPLESVKE HHHCCCCCHHHHHH c3-4 boundary 0.0 Medium: -33.735 cosmic_phi Medium|
22 nes_diso A6NKT7 739 PLESVKEMLKSVMQ CHHHHHHHHHHHHH c3-4 DISO 0.0 Weak: -31.402 cosmic_phi Weak|
23 nes_diso A6NKT7 811 LLKMIRQEVKAIKE HHHHHHHHHHHHHH c3-4 DISO 0.0 Bad: -23.456 cosmic_spacer
24 nes_diso A6NKT7 818 EVKAIKEEMQELKLNS HHHHHHHHHHHHHCCC c1a-5 DISO 0.0 Medium: -33.637 cosmic_spacer Medium|
25 nes_diso A6NKT7 912 EGFSIPVSADGFKFGI CCCCCCCCCCCCCCCC c1a-AT-4 DISO 0.0 NA cosmic_spacer
26 nes_diso A6NKT7 958 GRGVIFGQTSSTFTFAD CCCCCCCCCCCCCCHHH c1c-AT-4 DISO 0.0 NA
27 nes_diso A6NKT7 1040 PVVQMPEKVELVTG CCEECCCCEEEECC c3-4 boundary boundary|RanBD2_RanBP2-like; 0.43 Bad: -28.625
28 nes_beta_diso A6NKT7 1063 QGVKLFRFDAEVSQWK CCEEEEEEECCCCCCE c1aR-4 boundary boundary|RanBD2_RanBP2-like; 0.71 NA
29 nes_diso A6NKT7 1084 NLKILKNEVNGKVRMLM CEEEEECCCCCEEEEEE c1c-5 __ middle|RanBD2_RanBP2-like; 0.38 Bad: -25.503 cosmic_phi_to_LIVMF
30 nes_diso A6NKT7 1106 LKVCANHWITTTMNLKP CCEECCEEECCCCEEEE c1c-AT-4 boundary middle|RanBD2_RanBP2-like; 0.38 NA cosmic_spacer
31 nes_beta_diso A6NKT7 1437 GERKVEHLAVRFKLQD CCCEEEEEEEEECCHH c1a-AT-4 boundary boundary|RanBD3_RanBP2-like; 1.0 NA cosmic_spacer
32 nes_beta_diso A6NKT7 1437 GERKVEHLAVRFKLQD CCCEEEEEEEEECCHH c1d-4 boundary boundary|RanBD3_RanBP2-like; 1.0 NA cosmic_spacer
33 nes_diso A6NKT7 1446 VRFKLQDVADSFKKIF EEECCHHHHHHHHHHH c1aR-5 boundary boundary|RanBD3_RanBP2-like; 0.0 Medium: -38.228 Medium|
34 nes_diso A6NKT7 1449 KLQDVADSFKKIFD CCHHHHHHHHHHHH c3-4 boundary boundary|RanBD3_RanBP2-like; 0.0 Medium: -37.388 Medium|
35 nes_diso A6NKT7 1509 QGDDVADAASEVEVSS CCCCHHHCCCCCCCCC c1a-AT-4 DISO 0.0 NA
36 nes_diso A6NKT7 1561 GNSSATGSLFGFSFNA CCCCCCCCCCCCCCCC c1a-AT-4 DISO 0.0 NA cosmic_spacer
37 nes_diso A6NKT7 1678 ATNAVLMEQIKLLK HHHHHHHHHHHHHH c2-4 DISO boundary|Rab_bind; 0.0 Weak: -30.07 cosmic_phi Weak|
38 nes_diso A6NKT7 1686 QIKLLKSEIRRLER HHHHHHHHHHHHHH c3-4 boundary boundary|Rab_bind; 0.0 Bad: -24.983
39 nes_diso A6NKT7 1709 NVEHLKNVLLQFIFLK HHHHHHHHHHHHCCCC c1a-5 boundary boundary|Rab_bind; small|GRIP; small|Grip; 0.0 Medium: -34.618 cosmic_spacer Medium|
40 nes_diso A6NKT7 1731 RLLPVINTMLQLSLEE HHHHHHHHHHCCCHHH c1a-5 boundary boundary|Rab_bind; small|GRIP; small|Grip; 0.0 Medium: -36.852 cosmic_phi Medium|
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.