HOME Exp-NES Cancer-NES Human-NES Documentation Contact
O14497_ARI1A | AT-rich interactive domain-containing protein 1A   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso O14497 964 SPEMMGLGDVKLTP CCHHCCCCCCCCCH c2-4 DISO 0.0 Weak: -30.505 cosmic_spacer Weak|
2 nes_diso O14497 1045 GRKPLDLYRLYVSV CCCCCCHHHCCEEE c2-4 DISO middle|ARID_ARID1A; 0.0 Bad: -29.274 cosmic_spacer
3 nes_diso O14497 1047 KPLDLYRLYVSVKEIG CCCCHHHCCEEEECCC c1aR-5 DISO middle|ARID_ARID1A; 0.29 Bad: -28.426 cosmic_phi
4 nes_diso O14497 1050 DLYRLYVSVKEIGG CHHHCCEEEECCCC c3-4 DISO middle|ARID_ARID1A; 0.57 Bad: -28.163 cosmic_phi
5 nes_diso O14497 1260 YSRAAGPGLGNVAMGP CCCCCCCCCCCCCCCC c1a-AT-4 DISO 0.0 NA cosmic_spacer
6 nes_ord O14497 1684 STWALDTINILLYD HHHHHHHHHEEECC c2-AT-4 ORD 0.14 NA cosmic_spacer
7 nes_diso O14497 1702 MTFNLSQLPGLLELLV CCCCHHHCCCHHHHHH c1aR-5 boundary 0.0 Bad: -27.997 cosmic_phi
8 nes_diso O14497 1705 NLSQLPGLLELLVE CHHHCCCHHHHHHH c3-4 boundary 0.0 Medium: -37.94 cosmic_phi Medium|
9 low complexity O14497 1708 QLPGLLELLVEY HCCCHHHHHHHH c2-rev boundary 0.0 Bad: -29.078 cosmic_spacer
10 nes_diso O14497 1713 LELLVEYFRRCLIEIF HHHHHHHHHHHHHHHH c1aR-5 boundary 0.0 Bad: -21.953 cosmic_phi_to_LIVMF
11 nes_diso O14497 1716 LVEYFRRCLIEIFGILK HHHHHHHHHHHHHHHHH c1c-5 boundary 0.0 Medium: -36.135 cosmic_phi_to_LIVMF Medium|
12 nes_diso O14497 1716 LVEYFRRCLIEIFG HHHHHHHHHHHHHH c3-4 boundary 0.0 Bad: -29.875 cosmic_phi_to_LIVMF
13 nes_diso O14497 1801 SEEKLISKFDKLPVKIVQ CCHHCCCCCCCCCEEEEC c4-4 DISO 0.0 Bad: -29.459 cosmic_phi_to_LIVMF
14 nes_diso O14497 1980 RCVCVSNTIRSLSFVP HHHHHHHHHHHHCCCC c1a-4 boundary boundary|BAF250_C; 0.0 Bad: -29.914 cosmic_spacer_Pro
15 low complexity O14497 2003 KHPGLLLILGKLILLHH HCHHHHHHHHHHHHHCC c1c-4 boundary middle|BAF250_C; 0.0 Medium: -37.127 cosmic_phi_to_LIVMF
16 nes_diso O14497 2003 KHPGLLLILGKLILLH HCHHHHHHHHHHHHHC c1a-4 boundary middle|BAF250_C; 0.0 Medium: -33.882 cosmic_phi Medium|
17 low complexity O14497 2005 PGLLLILGKLILLH HHHHHHHHHHHHHC c2-4 boundary middle|BAF250_C; 0.0 Weak: -30.78 cosmic_phi
18 low complexity O14497 2006 GLLLILGKLILLHH HHHHHHHHHHHHCC c3-4 boundary middle|BAF250_C; 0.0 Weak: -31.357 cosmic_phi_to_LIVMF
19 nes_diso O14497 2060 TLVTLANISGQLDLSP HHHHHHHHCCCCCCCC c1aR-4 __ middle|BAF250_C; 0.0 Medium: -33.639 cosmic_phi Medium|
20 nes_diso O14497 2114 PQRLVLETLSKLSIQD HHHHHHHHHHHCCCCC c1a-4 boundary middle|BAF250_C; 0.0 Strong: -40.218 cosmic_phi_to_LIVMF Strong|
21 nes_ord O14497 2143 RLEKLYSTMVRFLS HHHHHHHHHHHHHH c3-4 ORD middle|BAF250_C; 0.0 Weak: -31.366 cosmic_phi
22 nes_ord O14497 2158 RKNPVCREMAVVLLAN CCCHHHHHHHHHHHHH c1a-4 ORD middle|BAF250_C; 0.0 Bad: -20.744 cosmic_phi
23 nes_diso O14497 2176 QGDSLAARAIAVQK HCCHHHHHHHHHHC c2-AT-4 boundary middle|BAF250_C; 0.0 NA cosmic_spacer
24 nes_diso O14497 2227 SVDMMRRAARALLALAK CHHHHHHHHHHHHHHHC c1c-AT-5 boundary boundary|BAF250_C; 0.0 NA cosmic_spacer_Pro
25 nes_diso O14497 2266 LMNSLVSQVICDVLFLI HHHHHHHHHHHHHHHHH c1c-5 DISO boundary|BAF250_C; 0.0 Weak: -32.184 cosmic_spacer Weak|
26 nes_diso O14497 2267 MNSLVSQVICDVLFLIG HHHHHHHHHHHHHHHHH c1c-4 DISO boundary|BAF250_C; 0.0 Bad: -27.817 cosmic_phi
27 nes_diso O14497 2267 MNSLVSQVICDVLFLI HHHHHHHHHHHHHHHH c1a-4 DISO boundary|BAF250_C; 0.0 Bad: -28.638 cosmic_phi
28 nes_diso O14497 2270 LVSQVICDVLFLIG HHHHHHHHHHHHHH c3-4 DISO 0.0 Weak: -30.931 cosmic_phi_to_LIVMF Weak|
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.