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O14647_CHD2 | Chromodomain-helicase-DNA-binding protein 2   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_ord O14647 502 NNSVILADEMGLGK CCCEEEECCCCCCC c2-AT-4 ORD middle|DEXHc_CHD2; 0.57 NA cosmic_spacer
2 nes_ord O14647 509 DEMGLGKTIQTISFLS CCCCCCCHHHHHHHHH c1a-4 ORD middle|DEXHc_CHD2; 0.0 Medium: -36.033 cosmic_phi
3 nes_ord O14647 576 EYEWIHSQTKRLKFNA HCEEECCCCCCCCEEE c1a-AT-4 ORD middle|DEXHc_CHD2; 0.14 NA cosmic_spacer
4 nes_ord O14647 589 FNALITTYEILLKD EEEEEECHHHHHCC c2-AT-4 ORD middle|DEXHc_CHD2; 0.43 NA cosmic_spacer
5 nes_diso O14647 605 VLGSINWAFLGVDE HHCCCCEEEEEECC c3-4 boundary middle|DEXHc_CHD2; 0.57 Bad: -29.245 cosmic_spacer
6 nes_diso O14647 652 SLKELWSLLHFIMP HHHHHHHHHHHHCC c3-4 boundary middle|DEXHc_CHD2; 0.0 Bad: -29.707 cosmic_spacer
7 nes_diso O14647 694 EPFLLRRVKKDVEKSL HHHHHHHHHHHHHHCC c1aR-4 boundary boundary|DEXHc_CHD2; 0.0 Bad: -26.515 cosmic_phi
8 nes_diso O14647 705 VEKSLPAKVEQILRVEM HHHCCCCCEEEEEEEEC c1c-4 boundary boundary|DEXHc_CHD2; 0.5 Medium: -38.068 cosmic_phi_to_LIVMF Medium|
9 nes_diso O14647 744 TRGSTSGFLNIVMELKK CCCCCCHHHHHHHHHHH c1c-AT-4 boundary 0.0 NA cosmic_spacer
10 nes_diso O14647 792 KLILLDKLLTRLRERG HHHHHHHHHHHHHHCC c1aR-4 boundary boundary|SF2_C_SNF; 0.0 Bad: -29.247
11 nes_diso O14647 792 KLILLDKLLTRLRE HHHHHHHHHHHHHH c3-4 boundary boundary|SF2_C_SNF; 0.0 Weak: -31.69 Weak|
12 nes_diso O14647 809 RVLIFSQMVRMLDILA EEEEECCCHHHHHHHH c1a-5 boundary boundary|SF2_C_SNF; 0.14 Medium: -34.752 Medium|
13 nes_diso O14647 861 FCFLLSTRAGGLGINL EEEEEECCCCCCCCCC c1a-AT-4 boundary middle|SF2_C_SNF; 0.29 NA cosmic_spacer
14 nes_diso O14647 921 VEEEIIERAKKKMVLDH HHHHHHHHHHHHHHHCH c1c-AT-4 boundary boundary|SF2_C_SNF; 0.0 NA cosmic_spacer
15 nes_diso O14647 929 AKKKMVLDHLVIQR HHHHHHHCHHHHEE c2-4 boundary boundary|SF2_C_SNF; 0.0 Bad: -21.046 cosmic_phi
16 nes_diso O14647 1009 VSTSATDELLSQFKVAN CCCHHHCHHHHHCCEEE c1c-AT-4 DISO 0.0 NA cosmic_spacer
17 nes_diso O14647 1010 STSATDELLSQFKVAN CCHHHCHHHHHCCEEE c1a-AT-4 DISO 0.0 NA cosmic_spacer
18 nes_diso O14647 1206 RGPTIKISGVQVNV CCCCEEECCEEECH c2-4 boundary 0.57 NA cosmic_phi
19 nes_diso O14647 1211 KISGVQVNVKSIIQ EECCEEECHHHHHH c3-4 boundary 0.43 Bad: -28.538 cosmic_phi
20 nes_diso O14647 1248 LTCRVKAAHFDVEW CCCCCCCCCCCCCC c2-AT-4 boundary 0.0 NA cosmic_spacer
21 nes_diso O14647 1306 QGKQLQTRADYLLKLLR CCHHHHHHHHHHHHHHH c1c-AT-4 DISO 0.0 NA cosmic_spacer
22 nes_diso O14647 1475 RMRPVKKALKQLDK HHHHHHHHHHHHCC c3-4 boundary boundary|DUF4208; 0.0 Bad: -22.347 cosmic_spacer
23 nes_diso O14647 1532 NLWIFVSKFTEFDA HHHHHHHHCCCCCH c3-4 boundary boundary|DUF4208; 0.0 Weak: -31.386 Weak|
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.