O15315 | DNA repair protein RAD51 homolog 2

O15315_RA51B | DNA repair protein RAD51 homolog 2 ProteinAtlas Cosmic Proviz Swissmodel

Cosmic Cancer Gene Census (CGC)

#	candidates	uniprotID	start#	sequence	secondary	class	loc_DISO	loc_CDD	beta	Ebind	Cosmic	TOTALscore(Ebind\|Stars)
1	nes_ord	O15315	29	DFLCLSPLELMKVTG	HHHHCCHHHHHHHHC	c1b-5	ORD		0.0	NA	cosmic_spacer S34F;
2	nes_ord	O15315	116	QFCIMMSILATLPTNMGG	HHHHHHHHHHCCCHHHCC	c4-5	ORD	middle\|Rad51_DMC1_radA;	0.0	NA	cosmic_phi_to_LIVMF S122I;L127S;M131I;
3	nes_ord	O15315	116	QFCIMMSILATLPT	HHHHHHHHHHCCCH	c3-4	ORD	middle\|Rad51_DMC1_radA;	0.0	NA	cosmic_phi S122I;L127S;
4	nes_ord	O15315	123	ILATLPTNMGGLEG	HHHCCCHHHCCCCC	c3-4	ORD	middle\|Rad51_DMC1_radA;	0.0	NA	cosmic_phi_to_LIVMF L127S;M131I;
5	nes_ord	O15315	130	NMGGLEGAVVYIDT	HHCCCCCEEEEEEC	c3-4	ORD	middle\|Rad51_DMC1_radA;	0.43	NA	cosmic_phi_to_LIVMF M131I;A137V;V138M;V139M;
6	nes_diso	O15315	196	EEEIISKGIKLVILDS	HHHHHHHCEEEEEEEC	c1a-4	boundary	middle\|Rad51_DMC1_radA;	0.43	Bad: -29.013	cosmic_phi V207L;V207A;L209P;
7	nes_diso	O15315	205	KLVILDSVASVVRKEF	EEEEEECHHHHCHHCC	c1aR-4	boundary	middle\|Rad51_DMC1_radA;	0.29	Medium: -36.812	cosmic_phi V207L;V207A;L209P;R217K;	Medium\|
8	nes_diso	O15315	238	EASSLKYLAEEFSIPV	HHHHHHHHHHHHCCCE	c1a-AT-4	boundary	middle\|Rad51_DMC1_radA;	0.0	NA	cosmic_spacer Y244C;E247K;E248A;I251V;P252L;
9	nes_diso	O15315	238	EASSLKYLAEEFSIPV	HHHHHHHHHHHHCCCE	c1d-4	boundary	middle\|Rad51_DMC1_radA;	0.0	NA	cosmic_phi_to_LIVMF Y244C;E247K;E248A;I251V;P252L;
10	nes_diso	O15315	269	SQADLVSPADDLSLSE	CCCCCCCCCCCCCCCC	c1a-AT-4	boundary	middle\|Rad51_DMC1_radA;	0.0	NA	cosmic_spacer P276S;
11	nes_diso	O15315	326	PLAPFTSFVYTIKE	CCCCCCEEEEEEEC	c3-4	boundary	boundary\|Rad51_DMC1_radA;	0.57	NA	cosmic_phi_to_LIVMF A328S;P329L;T331I;I337M;

candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
sequence: Hydrophobic positions are colored in red.
class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
loc_DISO: location of the segment with respect to the ordered/disordered regions
loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
beta: beta-strand content in the middle of the segment
Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.