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O15550_KDM6A | Lysine-specific demethylase 6A   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso O15550 48 ALGGLDSRLFGFVRFHE HHCCCCHHHHHHHHHCC c1c-5 boundary 0.0 Weak: -30.64 cosmic_phi Weak|
2 nes_diso O15550 48 ALGGLDSRLFGFVR HHCCCCHHHHHHHH c3-4 boundary 0.0 Weak: -31.303 Weak|
3 nes_ord O15550 91 VESDFFCQLGHFNLLL CCHHHHHHHHHHHHHC c1a-4 ORD boundary|TPR; 0.0 NA cosmic_spacer
4 nes_ord O15550 128 KNAAFLYGLGLVYFHY HCHHHHHHHHHHHHHC c1a-4 ORD middle|TPR; 0.0 NA cosmic_phi_to_LIVMF
5 nes_ord O15550 145 AFQWAIKAFQEVLYVDP CHHHHHHHHHHHHHHCC c1c-AT-5 ORD middle|TPR; 0.0 NA cosmic_spacer
6 nes_ord O15550 146 FQWAIKAFQEVLYVDP HHHHHHHHHHHHHHCC c1d-4 ORD middle|TPR; 0.0 NA cosmic_spacer
7 nes_ord O15550 165 RAKEIHLRLGLMFKVNT HHHHHHHHHHHHHHHCC c1c-4 ORD middle|TPR; 0.0 NA cosmic_spacer
8 nes_ord O15550 248 QLGWMHHTVDLLGD HHHHHHHHCCCCCH c3-4 ORD middle|TPR; 0.0 Weak: -30.145 cosmic_phi_to_LIVMF
9 nes_ord O15550 334 PMDALQAYICAVQLDH HHHHHHHHHHHHHHCC c1a-5 ORD middle|TPR; 0.0 NA cosmic_phi_to_LIVMF
10 nes_diso O15550 393 RIKYLQAQLCNLPQ HHHHHHHHCCCCCC c3-4 boundary boundary|TPR; 0.0 Bad: -28.564 cosmic_spacer
11 nes_diso O15550 490 AQKLMLEQLESQFVLMQ HHHHHHHHHHHHHHHHH c1c-4 DISO 0.0 Weak: -31.713 cosmic_phi Weak|
12 nes_diso O15550 491 QKLMLEQLESQFVLMQ HHHHHHHHHHHHHHHH c1aR-5 DISO 0.0 Bad: -27.697 cosmic_phi_to_LIVMF
13 nes_diso O15550 494 MLEQLESQFVLMQQ HHHHHHHHHHHHHH c3-4 DISO 0.0 Strong: -40.361 cosmic_phi_to_LIVMF Strong|
14 nes_diso O15550 743 SVEGLPNHVHQMTA CCCCCCCCCCCCCC c3-4 DISO 0.0 Medium: -33.852 cosmic_phi_to_LIVMF Medium|
15 nes_diso O15550 862 SQSPMKTDLLLVNH CCCCCCCCHHHHCC c2-AT-4 DISO 0.0 NA cosmic_spacer
16 nes_diso O15550 965 NPVTVIRGLAGALKLDL CCEEEEECCHHCCCCCC c1c-4 boundary 0.38 Weak: -32.409 cosmic_spacer Weak|
17 nes_diso O15550 969 VIRGLAGALKLDLGLFS EEECCHHCCCCCCCCCC c1c-5 boundary 0.0 Medium: -37.162 cosmic_phi Medium|
18 nes_ord O15550 1102 ELTKLPAFVRVVSA HHHCCCHHHEEECC c3-4 ORD boundary|JmjC; boundary|JmjC; 0.14 NA cosmic_phi_to_LIVMF
19 nes_ord O15550 1118 LLSHVGHTILGMNT HHHHCCCCCCCCCC c3-4 ORD boundary|JmjC; boundary|JmjC; 0.0 NA cosmic_phi
20 nes_ord O15550 1123 GHTILGMNTVQLYM CCCCCCCCCEEEEE c2-4 ORD middle|JmjC; boundary|JmjC; 0.14 NA cosmic_phi
21 nes_ord O15550 1125 TILGMNTVQLYMKVPG CCCCCCCEEEEEECCC c1aR-4 ORD middle|JmjC; boundary|JmjC; 0.57 NA cosmic_phi_to_LIVMF
22 nes_ord O15550 1269 PMVHLSWNMARNIKVSD CHHHHHHHHHHHHCCCC c1c-5 ORD boundary|JmjC; 0.0 NA cosmic_spacer
23 nes_beta_ord O15550 1332 SICEVEVFDLLFVT CCCCCEEEEEEEEE c2-5 ORD 0.71 Weak: -32.009 cosmic_phi_to_LIVMF
24 nes_diso O15550 1361 CARKTSGNLENFVVLEQ HHHHCCCCCCCEEEEEE c1c-AT-4 boundary 0.12 NA cosmic_spacer
25 nes_diso O15550 1361 CARKTSGNLENFVVLE HHHHCCCCCCCEEEEE c1a-AT-4 boundary 0.0 NA cosmic_spacer
26 nes_diso O15550 1379 KMEDLMQVYDQFTLAP EHHHHHHHHHHCEECC c1d-5 boundary 0.0 Strong: -40.355 cosmic_phi_to_LIVMF Strong|
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.