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O60716_CTND1 | Catenin delta-1   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)
  • Reference DB: NESdb:19
  • PMIDs: 10393933
  • Species: Homo sapiens (Human)
  • Evidence: LMB Sensitive
  • Mutation(export): L951A/L953A
  • Mutation(bind): Unknown
  • Functional seq: 943SLEEELDVLVLDDEGG958
  • Sites: -


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso O60716 33 ERRHVSAQLERVRVSP HHHHHHHCCCHHCCCC c1a-4 DISO 0.0 Bad: -24.716 cosmic_phi_to_LIVMF
2 nes_diso O60716 364 RQPELPEVIAMLGFRL CCCCHHHHHHHHCCCC c1a-4 boundary 0.0 Bad: -27.418 cosmic_spacer
3 nes_diso O60716 368 LPEVIAMLGFRLDA HHHHHHHHCCCCHH c2-4 boundary 0.0 Weak: -32.142 cosmic_phi_to_LIVMF Weak|
4 nes_diso O60716 371 VIAMLGFRLDAVKS HHHHHCCCCHHHHH c3-4 boundary 0.0 Bad: -29.626 cosmic_phi_to_LIVMF
5 low complexity O60716 406 KLKGIPVLVGLLDH HCCCHHHHHHHCCC c3-4 ORD small|ARM; 0.0 Medium: -37.19 cosmic_phi
6 nes_ord O60716 424 VHLGACGALKNISFGR HHHHHHHHHHHHHCCC c1a-AT-4 ORD 0.0 NA cosmic_spacer
7 nes_diso O60716 455 ALVRLLRKARDMDLTE HHHHHHHHCCCCCCHH c1a-AT-5 boundary small|ARM; 0.0 NA cosmic_spacer
8 nes_diso O60716 464 RDMDLTEVITGTLWNLS CCCCCHHHHHCCCCCCC c1cR-5 boundary 0.0 NA cosmic_phi_to_LIVMF
9 nes_diso O60716 483 DSIKMEIVDHALHALT HHHHHHHHHHHHHHHH c1aR-5 boundary 0.0 Medium: -34.038 cosmic_phi_to_LIVMF Medium|
10 nes_diso O60716 486 KMEIVDHALHALTD HHHHHHHHHHHHHC c3-4 boundary 0.0 Weak: -30.789 cosmic_phi_to_LIVMF Weak|
11 nes_diso O60716 551 CDGLVDALIFIVQA CCCHHHHHHHHHHH c2-AT-4 boundary 0.0 NA cosmic_spacer
12 nes_diso O60716 632 GKKPIEDPANDTVDFPK CCCCCCCCCCCCCCCCC c1c-AT-4 DISO 0.0 NA cosmic_spacer
13 nes_diso O60716 656 YELLFQPEVVRIYISL HHHHCCHHHHHHHHHH c1a-4 boundary 0.0 Weak: -31.066 cosmic_phi Weak|
14 nes_diso O60716 726 VVKAASGALRNLAVDA HHHHHHHHHHHHHCCH c1a-AT-5 boundary 0.0 NA
15 nes_diso O60716 774 TVISILNTINEVIA HHHHHHHHHHHHHH c3-4 boundary 0.0 Bad: -29.763 cosmic_spacer
16 nes_diso O60716 815 SEKEVRAAALVLQT CHHHHHHHHHHHHH c2-AT-4 boundary 0.0 NA
17 ExpNES_diso O60716 940 GQESLEEELDVLVLDD
   ++++++++*+*++		 CCCCCHHHHCCEEECC c1a-4 DISO 0.0 Medium: -38.477 cosmic_phi_to_LIVMF Medium|
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.