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O75533_SF3B1 | Splicing factor 3B subunit 1   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso O75533 434 TPTPLGGMTGFHMQT CCCCCCCCCCCCCCC c1b-4 DISO boundary|SF3b1; boundary|HSH155; 0.0 Weak: -31.825 cosmic_phi_to_LIVMF Weak|
2 nes_diso O75533 471 DIQYFDKLLVDVDE CCHHHHHHCCCCCH c3-4 boundary boundary|SF3b1; middle|HSH155; 0.0 Bad: -26.768 cosmic_phi_to_LIVMF
3 nes_diso O75533 549 RHLLVKVIDRILYKLD HHHHHHHHHHHHHHHH c1aR-5 boundary middle|HSH155; 0.0 Medium: -34.63 cosmic_phi Medium|
4 nes_diso O75533 552 LVKVIDRILYKLDD HHHHHHHHHHHHHH c3-4 boundary middle|HSH155; 0.0 Bad: -27.456 cosmic_phi
5 nes_diso O75533 555 VIDRILYKLDDLVR HHHHHHHHHHHHCH c3-4 boundary middle|HSH155; 0.0 Bad: -28.955 cosmic_phi
6 nes_diso O75533 563 LDDLVRPYVHKILVVIE HHHHCHHHHHHHHHHHH c1c-4 boundary middle|HSH155; 0.0 Bad: -28.443 cosmic_phi_to_LIVMF
7 nes_diso O75533 563 LDDLVRPYVHKILVVI HHHHCHHHHHHHHHHH c1a-4 boundary middle|HSH155; 0.0 Bad: -29.868 cosmic_phi
8 nes_diso O75533 602 KAAGLATMISTMRPDIDN HHCCHHHHHHHHCCCCCC c4-4 boundary middle|HSH155; 0.0 Weak: -30.711 cosmic_spacer Weak|
9 nes_diso O75533 609 MISTMRPDIDNMDE HHHHHCCCCCCCCH c3-4 boundary middle|HSH155; 0.0 Weak: -32.1 cosmic_spacer Weak|
10 nes_diso O75533 620 MDEYVRNTTARAFAVVA CCHHHHHHHHHHHHHHH c1c-AT-4 boundary middle|HSH155; 0.0 NA cosmic_spacer
11 nes_diso O75533 627 TTARAFAVVASALGIPS HHHHHHHHHHHHHCHHH c1c-AT-4 boundary middle|HSH155; 0.0 NA cosmic_spacer
12 nes_diso O75533 628 TARAFAVVASALGIPS HHHHHHHHHHHHCHHH c1a-AT-4 boundary middle|HSH155; 0.0 NA cosmic_spacer
13 nes_diso O75533 628 TARAFAVVASALGIPS HHHHHHHHHHHHCHHH c1d-4 boundary middle|HSH155; 0.0 NA cosmic_spacer
14 low complexity O75533 640 GIPSLLPFLKAVCK CHHHHHHHHHHHHH c3-4 boundary middle|HSH155; 0.0 Bad: -28.733 cosmic_spacer
15 nes_ord O75533 659 QARHTGIKIVQQIAILM HHHHHHHHHHHHHHHHH c1c-AT-4 ORD middle|HSH155; 0.0 NA cosmic_spacer
16 nes_ord O75533 661 RHTGIKIVQQIAILM HHHHHHHHHHHHHHH c1b-4 ORD middle|HSH155; 0.0 NA cosmic_phi_to_LIVMF
17 nes_ord O75533 675 MGCAILPHLRSLVEIIE HCCCHHHHHHHHHHHHH c1c-4 ORD middle|HSH155; 0.0 NA cosmic_spacer
18 nes_ord O75533 679 ILPHLRSLVEIIEH HHHHHHHHHHHHHH c3-4 ORD middle|HSH155; 0.0 NA cosmic_phi_to_LIVMF
19 nes_ord O75533 697 EQQKVRTISALAIAA CCHHHHHHHHHHHHH c1b-4 ORD middle|HSH155; 0.0 NA cosmic_phi_to_LIVMF
20 nes_diso O75533 742 GLAAFLKAIGYLIPLMDA HHHHHHHHHHHHHHHCCH c4-5 boundary middle|HSH155; 0.0 Bad: -25.002 cosmic_phi
21 nes_diso O75533 742 GLAAFLKAIGYLIP HHHHHHHHHHHHHH c3-4 boundary middle|HSH155; 0.0 Bad: -27.929 cosmic_phi_to_LIVMF
22 nes_diso O75533 865 RKMVMETIEKIMGNLG HHHHHHHHHHHHHHHC c1aR-5 boundary middle|HSH155; 0.0 Medium: -35.49 cosmic_phi_to_LIVMF Medium|
23 nes_diso O75533 868 VMETIEKIMGNLGA HHHHHHHHHHHHCH c3-4 boundary middle|HSH155; 0.0 Medium: -38.048 cosmic_phi_to_LIVMF Medium|
24 nes_diso O75533 907 DSVMLNGFGTVVNALG HHHHHHHHHHHHHHHH c1aR-5 __ middle|HSH155; 0.0 Bad: -29.238 cosmic_phi_to_LIVMF
25 nes_ord O75533 910 MLNGFGTVVNALGK HHHHHHHHHHHHHH c3-4 ORD middle|HSH155; 0.0 Weak: -30.823 cosmic_phi_to_LIVMF
26 nes_ord O75533 993 ILGALKAIVNVIGMHK HHHHHHHHHHHHCHHH c1a-5 ORD middle|HSH155; 0.0 NA cosmic_phi_to_LIVMF
27 nes_ord O75533 1002 NVIGMHKMTPPIKDLL HHHCHHHCCCCHHHHH c1aR-5 ORD middle|HSH155; 0.0 NA cosmic_phi_to_LIVMF
28 nes_ord O75533 1005 GMHKMTPPIKDLLPRLTP CHHHCCCCHHHHHHHHHH c4-5 ORD middle|HSH155; 0.0 NA cosmic_phi_to_LIVMF
29 nes_ord O75533 1005 GMHKMTPPIKDLLP CHHHCCCCHHHHHH c3-4 ORD middle|HSH155; 0.0 NA cosmic_phi_to_LIVMF
30 nes_ord O75533 1052 AREWMRICFELLELLK HHHHHHHHHHHHHHHH c1a-4 ORD middle|HSH155; 0.0 Medium: -33.594 cosmic_phi_to_LIVMF
31 nes_ord O75533 1054 EWMRICFELLELLK HHHHHHHHHHHHHH c2-4 ORD middle|HSH155; 0.0 Weak: -30.513 cosmic_phi_to_LIVMF
32 nes_ord O75533 1089 GPHDVLATLLNNLKVQE CHHHHHHHHHHHHHCCC c1c-4 ORD middle|HSH155; 0.0 NA
33 nes_ord O75533 1090 PHDVLATLLNNLKVQE HHHHHHHHHHHHHCCC c1a-4 ORD middle|HSH155; 0.0 NA
34 nes_ord O75533 1139 PELNVQNGVLKSLSFLF CCHHHHHHHHHHHHHHH c1c-4 ORD middle|HSH155; 0.0 NA cosmic_spacer
35 nes_ord O75533 1147 VLKSLSFLFEYIGE HHHHHHHHHHHHHH c3-4 ORD middle|HSH155; 0.0 Medium: -33.004
36 nes_ord O75533 1150 SLSFLFEYIGEMGK HHHHHHHHHHHHCH c3-4 ORD middle|HSH155; 0.0 Bad: -26.029 cosmic_spacer
37 nes_ord O75533 1183 VHRQTASAVVQHMSLGV HHHHHHHHHHHHHHHCC c1c-AT-4 ORD middle|HSH155; 0.0 NA cosmic_spacer
38 nes_ord O75533 1184 HRQTASAVVQHMSLGV HHHHHHHHHHHHHHCC c1a-AT-4 ORD middle|HSH155; 0.0 NA cosmic_spacer
39 nes_diso O75533 1191 VVQHMSLGVYGFGC HHHHHHHCCCCCCH c3-4 boundary middle|HSH155; 0.0 Bad: -29.473 cosmic_spacer
40 nes_diso O75533 1204 CEDSLNHLLNYVWPNVFE HHHHHHHHHHHHCHHHCC c4-4 boundary middle|HSH155; 0.0 Bad: -24.104 cosmic_spacer
41 nes_diso O75533 1226 VIQAVMGALEGLRVAI HHHHHHHHHHHHHHHH c1a-5 boundary middle|HSH155; 0.0 Strong: -41.362 cosmic_phi_to_LIVMF Strong|
42 nes_diso O75533 1260 KVRDVYWKIYNSIYIGS HHHHHHHHHHHHHHCCC c1c-5 boundary middle|HSH155; 0.0 Bad: -22.008 cosmic_phi_to_LIVMF
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.