P04049 | RAF proto-oncogene serine/threonine-protein kinase

P04049_RAF1 | RAF proto-oncogene serine/threonine-protein kinase ProteinAtlas Cosmic Proviz Swissmodel

Cosmic Cancer Gene Census (CGC)

#	candidates	uniprotID	start#	sequence	secondary	class	loc_DISO	loc_CDD	beta	Ebind	Cosmic	TOTALscore(Ebind\|Stars)
1	nes_diso	P04049	3	HIQGAWKTISNGFGFKD	CCCCCCCCHHCCCCCCC	c1c-AT-5	DISO		0.0	NA	cosmic_spacer S12C;F17S;
2	nes_diso	P04049	64	NKQRTVVNVRNGMSLHD	CCCCCCCCCCCCCCHHH	c1c-AT-4	DISO	boundary\|RBD_CRAF;	0.0	NA	cosmic_spacer Q66H;N71D;R73Q;N74S;M76I;
3	nes_diso	P04049	65	KQRTVVNVRNGMSLHD	CCCCCCCCCCCCCHHH	c1d-4	DISO	boundary\|RBD_CRAF;	0.0	NA	cosmic_phi_to_LIVMF Q66H;N71D;R73Q;N74S;M76I;
4	nes_diso	P04049	74	NGMSLHDCLMKALKVRG	CCCCHHHHHHHHHHHCC	c1c-4	DISO	boundary\|RBD_CRAF;	0.0	Medium: -36.517	cosmic_phi M76I;M83T;L86P;L86F;L86R;R89T;	Medium\|
5	nes_diso	P04049	114	WNTDAASLIGEELQVDF	CCCCHHHHCCCCEEEEE	c1c-AT-4	boundary	boundary\|RBD_CRAF;	0.0	NA	cosmic_spacer N115S;N115H;T116S;A119V;I122V;E125K;E125Q; D129E;
6	nes_diso	P04049	137	TTHNFARKTFLKLAFCD	CCCEEEECCCCCEEECH	c1c-AT-4	boundary	boundary\|RBD_CRAF;	0.38	NA	cosmic_spacer N140K;R143Q;R143L;R143W;
7	nes_diso	P04049	138	THNFARKTFLKLAFCD	CCEEEECCCCCEEECH	c1a-AT-4	boundary	boundary\|RBD_CRAF;	0.29	NA	cosmic_spacer N140K;R143Q;R143L;R143W;
8	nes_diso	P04049	147	LKLAFCDICQKFLLNG	CCEEECHHHHHHHHCC	c1aR-4	boundary	boundary\|RBD_CRAF; small\|C1_1;	0.14	Bad: -29.057	cosmic_spacer D153Y;L160F;N161K;
9	nes_diso	P04049	205	GVPALPSLTMRR	CCCCCCCHHCCC	c2-rev	DISO		0.0	Weak: -30.115	cosmic_phi A208T;L209P;R215C;	Weak\|
10	nes_diso	P04049	210	PSLTMRRMRESVSRMP	CCHHCCCCCCCCCCCC	c1aR-5	DISO		0.0	Weak: -31.504	cosmic_spacer R215C;R223M;	Weak\|
11	nes_diso	P04049	340	YYWEIEASEVMLST	CCCCCCHHHEEEEE	c2-AT-4	boundary	boundary\|STKc_C-Raf; boundary\|Pkinase;	0.14	NA	cosmic_spacer M350T;
12	nes_beta_ord	P04049	368	WHGDVAVKILKVVD	ECCCEEEEEECCCC	c2-4	ORD	middle\|STKc_C-Raf; boundary\|Pkinase;	0.86	NA	cosmic_spacer G370R;
13	nes_diso	P04049	386	QFQAFRNEVAVLRK	HHHHHHHHHHHHHH	c3-4	boundary	middle\|STKc_C-Raf; middle\|Pkinase;	0.0	Bad: -29.119	cosmic_phi_to_LIVMF A389V;R391K;R391S;L397V;R398H;R398L;R398S;
14	nes_diso	P04049	392	NEVAVLRKTRHVNILL	HHHHHHHHCCCCCEEE	c1a-AT-4	boundary	middle\|STKc_C-Raf; middle\|Pkinase;	0.0	NA	cosmic_spacer L397V;R398H;R398L;R398S;R401Q;H402N;L406M;
15	nes_diso	P04049	405	ILLFMGYMTKDNLAIVT	EEEEEECCCCCCEEEEE	c1c-AT-5	boundary	middle\|STKc_C-Raf; middle\|Pkinase;	0.25	NA	cosmic_spacer L406M;M412V;
16	nes_diso	P04049	434	HVQETKFQMFQLIDIAR	HCCCCCCCHHHHHHHHH	c1c-AT-5	boundary	middle\|STKc_C-Raf; middle\|Pkinase;	0.0	NA	cosmic_spacer F443L;A449T;
17	nes_diso	P04049	436	QETKFQMFQLIDIAR	CCCCCCHHHHHHHHH	c1b-4	boundary	middle\|STKc_C-Raf; middle\|Pkinase;	0.0	NA	cosmic_phi_to_LIVMF F443L;A449T;
18	nes_diso	P04049	476	LHEGLTVKIGDFGLAT	EECCCEEEECCCCCCE	c1a-4	boundary	middle\|STKc_C-Raf; middle\|Pkinase;	0.57	NA	cosmic_phi_to_LIVMF E478K;G479D;G485R;L489F;
19	nes_diso	P04049	478	EGLTVKIGDFGLAT	CCCEEEECCCCCCE	c2-4	boundary	middle\|STKc_C-Raf; middle\|Pkinase;	0.57	NA	cosmic_phi_to_LIVMF G479D;G485R;L489F;
20	low complexity	P04049	508	SVLWMAPEVIRMQD	CEEECCHHHHCCCC	c3-4	boundary	middle\|STKc_C-Raf; middle\|Pkinase;	0.14	Medium: -37.271	cosmic_spacer_Pro L510F;R518P;M519V;Q520R;
21	nes_diso	P04049	594	EERPLFPQILSSIELLQ	HHCCCHHHHHHHHHHHH	c1c-4	boundary	boundary\|STKc_C-Raf; boundary\|Pkinase;	0.0	Bad: -27.375	cosmic_spacer P600L;Q601R;L603M;S605F;
22	nes_diso	P04049	595	ERPLFPQILSSIELLQ	HCCCHHHHHHHHHHHH	c1a-4	boundary	boundary\|STKc_C-Raf; boundary\|Pkinase;	0.0	Weak: -31.184	cosmic_phi_to_LIVMF P600L;Q601R;L603M;S605F;	Weak\|
23	nes_diso	P04049	598	LFPQILSSIELLQH	CHHHHHHHHHHHHH	c3-4	boundary	boundary\|STKc_C-Raf; boundary\|Pkinase;	0.0	Weak: -30.42	cosmic_spacer P600L;Q601R;L603M;S605F;	Weak\|

candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
sequence: Hydrophobic positions are colored in red.
class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
loc_DISO: location of the segment with respect to the ordered/disordered regions
loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
beta: beta-strand content in the middle of the segment
Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.