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P04626_ERBB2 | Receptor tyrosine-protein kinase erbB-2   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • signal-peptide
  • transmembrane
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso P04626 21 ASTQVCTGTDMKLRLPA CCCCCCCCCCCCCCCCC c1c-AT-4 boundary boundary|Recep_L_domain; 0.0 NA cosmic_spacer
2 nes_beta_diso P04626 73 FLQDIQEVQGYVLIAH CCCCEEEECCEEEEEC c1d-5 DISO middle|Recep_L_domain; 0.71 NA cosmic_spacer
3 nes_diso P04626 90 QVRQVPLQRLRIVR CCCCCCCCCCEEEE c2-5 DISO middle|Recep_L_domain; 0.0 Strong: -41.028 cosmic_spacer Strong|
4 nes_diso P04626 138 RELQLRSLTEILKGGV EEECCCCCCHHHCCCE c1aR-4 boundary boundary|Recep_L_domain; 0.0 Medium: -33.105 cosmic_spacer Medium|
5 nes_diso P04626 141 QLRSLTEILKGGVLIQR CCCCCCHHHCCCEEEEC c1c-5 boundary boundary|Recep_L_domain; 0.0 Bad: -27.603 cosmic_spacer
6 nes_ord P04626 366 GCKKIFGSLAFLPESFDG CCEEEECCEEECCCCCCC c4-4 ORD boundary|Furin-like; boundary|Recep_L_domain; 0.5 NA cosmic_phi_to_LIVMF
7 nes_diso P04626 398 QVFETLEEITGYLYISA HHHHHCEEECCCEEEEC c1c-AT-5 boundary middle|Recep_L_domain; 0.38 NA cosmic_spacer
8 nes_diso P04626 399 VFETLEEITGYLYISA HHHHCEEECCCEEEEC c1a-AT-5 boundary middle|Recep_L_domain; 0.43 NA cosmic_spacer
9 nes_diso P04626 399 VFETLEEITGYLYISA HHHHCEEECCCEEEEC c1d-5 boundary middle|Recep_L_domain; 0.43 NA cosmic_spacer
10 nes_diso P04626 418 SLPDLSVFQNLQVIR CCCCCCHHCCCEEEE c1b-5 boundary middle|Recep_L_domain; 0.0 Strong: -40.87 cosmic_spacer Strong|
11 nes_diso P04626 432 RGRILHNGAYSLTLQG ECEECCCCCEEEEEEC c1a-AT-4 boundary middle|Recep_L_domain; 0.29 NA cosmic_spacer
12 nes_beta_diso P04626 439 GAYSLTLQGLGISW CCEEEEEECCCCEE c2-4 boundary middle|Recep_L_domain; 0.71 NA cosmic_spacer
13 nes_ord P04626 457 SLRELGSGLALIHH CCCEECCCCEEEEC c3-4 ORD boundary|Recep_L_domain; 0.43 Medium: -33.308 cosmic_spacer
14 nes_TM P04626 650 PLTSIISAVVGILLVV CHHHHHHHHHHHHHHH c1a-5 boundary boundary|GF_recep_IV; small|TM_ErbB2; 0.0 NA cosmic_phi
15 low complexity P04626 654 IISAVVGILLVVVLGV HHHHHHHHHHHHHHHH c1a-5 boundary boundary|GF_recep_IV; small|TM_ErbB2; 0.0 NA cosmic_spacer_Pro
16 low complexity P04626 658 VVGILLVVVLGVVFGI HHHHHHHHHHHHHHHH c1a-5 boundary boundary|GF_recep_IV; small|TM_ErbB2; 0.0 NA cosmic_phi_to_LIVMF
17 low complexity P04626 662 LLVVVLGVVFGILIKR HHHHHHHHHHHHHHHH c1a-5 boundary boundary|GF_recep_IV; small|TM_ErbB2; 0.0 Bad: -28.449 cosmic_phi
18 nes_diso P04626 714 ILKETELRKVKVLG HHHHHHHHCEEEEC c2-AT-5 boundary boundary|PTKc_HER2; boundary|Pkinase_Tyr; 0.14 NA cosmic_spacer
19 nes_ord P04626 782 VSRLLGICLTSTVQLVT CHHEEEECCCCCCEEHH c1c-4 ORD middle|PTKc_HER2; middle|Pkinase_Tyr; 0.38 NA cosmic_phi_to_LIVMF
20 nes_ord P04626 829 IAKGMSYLEDVRLVH HHHHCCHHHHHCHHC c1b-4 ORD middle|PTKc_HER2; middle|Pkinase_Tyr; 0.0 NA cosmic_phi_to_LIVMF
21 nes_ord P04626 842 VHRDLAARNVLVKS HCHHHHHHCEEECC c2-AT-4 ORD middle|PTKc_HER2; middle|Pkinase_Tyr; 0.14 NA cosmic_spacer
22 nes_ord P04626 855 SPNHVKITDFGLAR CCCEEEECCCCHHH c2-4 ORD middle|PTKc_HER2; middle|Pkinase_Tyr; 0.57 NA cosmic_spacer
23 nes_ord P04626 887 KWMALESILRRRFTHQS EEHHHHHHHCCCCCCCC c1cR-4 ORD middle|PTKc_HER2; middle|Pkinase_Tyr; 0.0 NA cosmic_phi_to_LIVMF
24 nes_diso P04626 945 PICTIDVYMIMVKC CCCCHHHHHHHHHH c2-5 boundary middle|PTKc_HER2; boundary|Pkinase_Tyr; 0.0 Medium: -37.848 cosmic_phi_to_LIVMF Medium|
25 nes_diso P04626 945 PICTIDVYMIMVKC CCCCHHHHHHHHHH c3-4 boundary middle|PTKc_HER2; boundary|Pkinase_Tyr; 0.0 Medium: -36.2 cosmic_spacer Medium|
26 nes_diso P04626 949 IDVYMIMVKCWMIDSE HHHHHHHHHHHCCCCH c1aR-4 boundary middle|PTKc_HER2; boundary|Pkinase_Tyr; 0.0 Medium: -33.376 cosmic_phi_to_LIVMF Medium|
27 nes_diso P04626 968 RFRELVSEFSRMAR CHHHHHHHHHHHHH c3-4 boundary boundary|PTKc_HER2; boundary|Pkinase_Tyr; 0.0 Medium: -34.263 cosmic_spacer Medium|
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.