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P04629_NTRK1 | High affinity nerve growth factor receptor   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • signal-peptide
  • transmembrane
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_ord P04629 86 DLRGLGELRNLTIVK HHHCCCCCCCEEEEC c1b-5 ORD boundary|LRR_8; 0.14 NA cosmic_phi_to_LIVMF
2 nes_ord P04629 95 NLTIVKSGLRFVAP CEEEECCCCEEECC c3-4 ORD boundary|LRR_8; 0.43 NA cosmic_phi_to_LIVMF
3 nes_ord P04629 109 DAFHFTPRLSRLNLSF CCHHCCCCCCEEECCC c1a-4 ORD boundary|LRR_8; 0.14 NA cosmic_phi_to_LIVMF
4 nes_ord P04629 116 RLSRLNLSFNALES CCCEEECCCCCCCC c3-4 ORD boundary|LRR_8; 0.43 NA cosmic_spacer
5 nes_ord P04629 126 ALESLSWKTVQGLSLQE CCCCCCHHHCCCCCCCE c1c-AT-5 ORD boundary|LRR_8; 0.0 NA cosmic_spacer
6 nes_ord P04629 134 TVQGLSLQELVLSG HCCCCCCCEEEECC c2-5 ORD boundary|LRR_8; 0.29 Weak: -32.04 cosmic_phi_to_LIVMF
7 nes_diso P04629 189 ASCGVPTLKVQVPN CCCCCCEEEEECCC c2-AT-4 boundary boundary|Ig_TrkABC_d4; 0.57 NA cosmic_spacer
8 nes_ord P04629 199 QVPNASVDVGDDVLLRC ECCCEEEECCCCEEEEE c1c-AT-5 ORD boundary|Ig_TrkABC_d4; 0.5 NA cosmic_spacer
9 nes_beta_diso P04629 243 GLPSLGLTLANVTS CCCCEEEEEEECCH c3-4 boundary middle|Ig_TrkABC_d4; 0.86 NA
10 nes_diso P04629 247 LGLTLANVTSDLNRKN EEEEEEECCHHHCCCE c1aR-4 boundary boundary|Ig_TrkABC_d4; 0.43 Weak: -30.381 cosmic_phi_to_LIVMF Weak|
11 nes_beta_ord P04629 270 DVGRAEVSVQVNVSFPA CCCCEEEEEEEEEECCC c1c-AT-5 ORD boundary|Ig_TrkABC_d4; boundary|Ig_TrKABC_d5; 1.0 NA cosmic_spacer
12 nes_ord P04629 282 VSFPASVQLHTAVEMHH EECCCEEEEECCCCCCC c1c-AT-4 ORD boundary|Ig_TrkABC_d4; boundary|Ig_TrKABC_d5; 0.62 NA cosmic_spacer
13 nes_TM P04629 412 DETPFGVSVAVGLAVFA CCCCCCHHHHHHHHHHH c1c-4 DISO boundary|Ig_TrKABC_d5; 0.0 Bad: -21.534 cosmic_phi
14 nes_TM P04629 418 VSVAVGLAVFACLFLST HHHHHHHHHHHHHHHHH c1c-4 DISO 0.0 Bad: -29.61 cosmic_phi_to_LIVMF
15 nes_TM P04629 420 VAVGLAVFACLFLSTL HHHHHHHHHHHHHHHH c1aR-4 DISO 0.0 Medium: -39.291 cosmic_phi
16 nes_TM P04629 423 GLAVFACLFLSTLLLVL HHHHHHHHHHHHHHHHH c1c-5 DISO 0.0 Medium: -36.136 cosmic_phi
17 nes_TM P04629 426 VFACLFLSTLLLVL HHHHHHHHHHHHHH c2-5 DISO 0.0 Weak: -31.72 cosmic_phi_to_LIVMF
18 nes_TM P04629 428 ACLFLSTLLLVLNKCG HHHHHHHHHHHHHCCC c1aR-4 DISO 0.0 Medium: -36.202 cosmic_phi_to_LIVMF
19 nes_beta_diso P04629 458 PEDGLAMSLHFMTLGG CCCCCCEEEEECCCCC c1a-4 DISO 0.71 Medium: -38.932 cosmic_phi_to_LIVMF
20 nes_beta_diso P04629 460 DGLAMSLHFMTLGG CCCCEEEEECCCCC c2-4 DISO 0.71 Strong: -41.665 cosmic_phi_to_LIVMF
21 nes_ord P04629 512 LKWELGEGAFGKVFLAE EEEECCCCCCCCEEEEE c1c-AT-4 ORD boundary|PTKc_TrkA; boundary|Pkinase_Tyr; 0.0 NA cosmic_spacer
22 nes_ord P04629 553 ARQDFQREAELLTMLQ HHHHHHHHHHHHHHCC c1a-AT-4 ORD middle|PTKc_TrkA; middle|Pkinase_Tyr; 0.0 NA cosmic_spacer
23 nes_diso P04629 635 AAGMVYLAGLHFVH HHHHHHHHHCCCCC c2-4 boundary middle|PTKc_TrkA; middle|Pkinase_Tyr; 0.0 Bad: -28.224 cosmic_phi_to_LIVMF
24 nes_beta_ord P04629 658 VGQGLVVKIGDFGMSR CCCCCEEEEECCCCCC c1a-4 ORD middle|PTKc_TrkA; middle|Pkinase_Tyr; 0.71 NA cosmic_phi_to_LIVMF
25 nes_beta_ord P04629 660 QGLVVKIGDFGMSR CCCEEEEECCCCCC c2-4 ORD middle|PTKc_TrkA; middle|Pkinase_Tyr; 0.71 NA cosmic_phi_to_LIVMF
26 nes_diso P04629 773 SIKDVHARLQALAQ CHHHHHHHHHHHHH c3-4 boundary boundary|PTKc_TrkA; boundary|Pkinase_Tyr; 0.0 Medium: -34.186 cosmic_phi Medium|
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.