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P04843_RPN1 | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • signal-peptide
  • transmembrane
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso P04843 2 EAPAAGLFLLLLLG CHHHHHHHHHHHHH c2-AT-4 boundary boundary|Ribophorin_I; 0.0 NA
2 nes_beta_diso P04843 28 APPLINEDVKRTVDLSS CCCCEECEEEEEEECCC c1c-4 boundary boundary|Ribophorin_I; 0.88 NA
3 nes_beta_diso P04843 42 LSSHLAKVTAEVVLAH CCCCEEEEEEEEEEEE c1a-AT-4 boundary boundary|Ribophorin_I; 1.0 NA
4 nes_beta_diso P04843 42 LSSHLAKVTAEVVLAH CCCCEEEEEEEEEEEE c1d-4 boundary boundary|Ribophorin_I; 1.0 NA
5 nes_diso P04843 73 LEPELEARLAHLGVQV CCHHHHHHEEEEEEEE c1a-4 boundary middle|Ribophorin_I; 0.43 Medium: -36.735 Medium|
6 nes_beta_diso P04843 108 KSGRFFTVKLPVAL CCCEEEEEEECCCC c2-AT-4 boundary middle|Ribophorin_I; 1.0 NA cosmic_spacer
7 nes_ord P04843 117 LPVALDPGAKISVIVET ECCCCCCCCEEEEEEEE c1c-AT-4 ORD middle|Ribophorin_I; 0.38 NA cosmic_spacer
8 nes_beta_ord P04843 223 PFLTITSMTRVIEVSH CCEEEEEEEEEEEECC c1aR-4 ORD middle|Ribophorin_I; 1.0 NA cosmic_phi_to_LIVMF
9 nes_ord P04843 301 STSHLLILDDSVEMEI EECEEEECCCEEEEEE c1d-4 ORD middle|Ribophorin_I; 0.57 NA cosmic_spacer
10 nes_ord P04843 349 YALKMRFVDHVFDEQV EEEEEEECCCCCCCEE c1aR-4 ORD middle|Ribophorin_I; 0.43 NA cosmic_spacer
11 nes_ord P04843 356 VDHVFDEQVIDSLTVKI CCCCCCCEEEEEEEEEE c1c-4 ORD middle|Ribophorin_I; 0.62 NA cosmic_phi
12 nes_beta_ord P04843 360 FDEQVIDSLTVKIILPE CCCEEEEEEEEEEECCC c1c-4 ORD middle|Ribophorin_I; 1.0 NA cosmic_phi
13 nes_ord P04843 370 VKIILPEGAKNIEIDS EEEECCCCCEECEECC c1a-AT-4 ORD middle|Ribophorin_I; 0.29 NA cosmic_spacer
14 nes_ord P04843 413 KKNLVEQHIQDIVVHY ECCCCHHHCEEEEEEE c1a-4 ORD middle|Ribophorin_I; 0.29 Bad: -28.305 cosmic_phi_to_LIVMF
15 nes_ord P04843 422 QDIVVHYTFNKVLMLQE EEEEEEEECCHHHHCHH c1c-4 ORD boundary|Ribophorin_I; 0.5 NA cosmic_spacer
16 nes_ord P04843 422 QDIVVHYTFNKVLMLQ EEEEEEEECCHHHHCH c1a-4 ORD boundary|Ribophorin_I; 0.57 NA cosmic_spacer
17 low complexity P04843 432 KVLMLQEPLLVVAA HHHHCHHHHHHHHH c3-4 boundary boundary|Ribophorin_I; 0.0 Medium: -35.27 cosmic_spacer
18 nes_TM P04843 437 QEPLLVVAAFYILF HHHHHHHHHHHHHH c2-4 boundary boundary|Ribophorin_I; 0.0 Bad: -19.065 cosmic_spacer
19 low complexity P04843 438 EPLLVVAAFYILFFTV HHHHHHHHHHHHHHHH c1a-4 boundary boundary|Ribophorin_I; 0.0 Medium: -39.012 cosmic_spacer
20 nes_TM P04843 439 PLLVVAAFYILFFTVI HHHHHHHHHHHHHHHH c1aR-5 boundary boundary|Ribophorin_I; 0.0 Medium: -39.902 cosmic_spacer
21 nes_TM P04843 442 VVAAFYILFFTVIIYV HHHHHHHHHHHHHHHH c1a-5 boundary boundary|Ribophorin_I; 0.0 Bad: -24.646 cosmic_spacer
22 nes_diso P04843 471 ARMKVACITEQVLTLV HHHHHHHHHHHHHHHH c1aR-5 boundary boundary|Ribophorin_I; boundary|CtIP_N; 0.0 Bad: -28.786
23 nes_diso P04843 474 KVACITEQVLTLVN HHHHHHHHHHHHHH c3-4 boundary boundary|Ribophorin_I; boundary|CtIP_N; 0.0 Weak: -30.886 Weak|
24 nes_diso P04843 478 ITEQVLTLVNKRIGLYR HHHHHHHHHHHHHHHHH c1c-4 __ boundary|Ribophorin_I; boundary|CtIP_N; 0.0 Bad: -29.374
25 nes_diso P04843 550 EMQKLDAQVKELVLKS HHHHHHHHHHHHHHHH c1a-5 boundary middle|CtIP_N; 0.0 Medium: -33.614 cosmic_spacer Medium|
26 nes_diso P04843 596 LVTKIDHILDALXX HHHHHHHHHHHC c3-4-Ct DISO boundary|CtIP_N; 0.0 Bad: -26.261 cosmic_phi_to_LIVMF
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.