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P06400_RB | Retinoblastoma-associated protein   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso P06400 38 GPEDLPLVRLEFEE CCCCCCCCCCCCCC c2-4 boundary 0.0 Medium: -34.636 cosmic_spacer Medium|
2 nes_diso P06400 53 EEPDFTALCQKLKIPD CHHHHHHHHHHCCCCH c1d-4 boundary 0.0 Bad: -27.817 cosmic_spacer
3 nes_diso P06400 97 ELWGICIFIAAVDLDE HHHEEHHHHEEEECCC c1a-5 boundary boundary|DUF3452 superfamily; 0.43 NA cosmic_spacer
4 nes_ord P06400 120 LQKNIEISVHKFFNLLK HHHHCCCCHHHHHHHHH c1c-4 ORD boundary|DUF3452 superfamily; 0.0 Bad: -27.69 cosmic_phi_to_LIVMF
5 nes_ord P06400 127 SVHKFFNLLKEIDT CHHHHHHHHHHHHC c3-4 ORD boundary|DUF3452 superfamily; 0.0 Weak: -30.067 cosmic_phi
6 nes_diso P06400 177 PSSSISTEINSALVLKV CCCCCCCCCCHHHHHHH c1c-4 boundary middle|DUF3452 superfamily; 0.0 Bad: -23.868 cosmic_phi_to_LIVMF
7 nes_diso P06400 204 EVLQMEDDLVISFQLML HHHCCCCHHHHHHHHHH c1c-5 boundary boundary|DUF3452 superfamily; 0.0 Strong: -42.084 cosmic_phi_to_LIVMF Strong|
8 nes_diso P06400 208 MEDDLVISFQLMLCVLD CCCHHHHHHHHHHHHHH c1c-4 boundary boundary|DUF3452 superfamily; 0.0 Strong: -54.209 cosmic_phi_to_LIVMF Strong|
9 nes_diso P06400 212 LVISFQLMLCVLDYFI HHHHHHHHHHHHHHHH c1aR-5 boundary boundary|DUF3452 superfamily; 0.0 Weak: -30.188 Weak|
10 low complexity P06400 212 LVISFQLMLCVLDY HHHHHHHHHHHHHH c3-4 boundary boundary|DUF3452 superfamily; 0.0 Weak: -31.048
11 nes_diso P06400 215 SFQLMLCVLDYFIKLSP HHHHHHHHHHHHHHHCC c1c-5 boundary boundary|DUF3452 superfamily; 0.0 Bad: -24.484
12 nes_diso P06400 215 SFQLMLCVLDYFIK HHHHHHHHHHHHHH c3-4 boundary boundary|DUF3452 superfamily; 0.0 Medium: -39.048 Medium|
13 nes_diso P06400 216 FQLMLCVLDYFIKLSP HHHHHHHHHHHHHHCC c1aR-4 boundary boundary|DUF3452 superfamily; 0.0 Bad: -27.388
14 nes_diso P06400 218 LMLCVLDYFIKLSPPMLL HHHHHHHHHHHHCCHHHC c4-5 boundary boundary|DUF3452 superfamily; 0.0 Medium: -34.078 cosmic_spacer Medium|
15 nes_diso P06400 218 LMLCVLDYFIKLSP HHHHHHHHHHHHCC c3-4 boundary boundary|DUF3452 superfamily; 0.0 Medium: -36.743 Medium|
16 nes_diso P06400 263 IAKQLENDTRIIEVLC HHHHHHCCHHHHHHHH c1a-AT-4 boundary 0.0 NA cosmic_spacer
17 nes_diso P06400 281 HECNIDEVKNVYFKN CCCCHHHHHHHHHHC c1b-4 boundary 0.0 Bad: -26.373 cosmic_phi
18 nes_diso P06400 292 YFKNFIPFMNSLGLVT HHHCHHHHHHHCCCCC c1a-5 boundary 0.0 Weak: -30.462 cosmic_phi_to_LIVMF Weak|
19 nes_diso P06400 374 PVRTVMNTIQQLMMIL HHHHHHHHHHHHHHHH c1a-5 boundary boundary|RB_A; 0.0 Strong: -42.298 cosmic_spacer Strong|
20 nes_diso P06400 466 ERLSIQNFSKLLNDNI HHCCCCCHHHHHCHHH c1aR-4 boundary middle|RB_A; 0.0 Weak: -31.079 cosmic_phi Weak|
21 nes_diso P06400 473 FSKLLNDNIFHMSLLA HHHHHCHHHHHHHHHH c1a-4 boundary middle|RB_A; 0.0 Weak: -30.191 cosmic_phi Weak|
22 nes_diso P06400 480 NIFHMSLLACALEVVM HHHHHHHHHHHHHHHH c1aR-5 boundary middle|RB_A; 0.0 Strong: -41.886 cosmic_phi Strong|
23 nes_diso P06400 483 HMSLLACALEVVMA HHHHHHHHHHHHHH c3-4 boundary middle|RB_A; 0.0 Medium: -37.148 cosmic_phi Medium|
24 nes_diso P06400 510 TDLSFPWILNVLNLKA CCCCCHHHHHHCCCCH c1a-4 boundary middle|RB_A; 0.0 Bad: -26.183 cosmic_phi
25 nes_diso P06400 517 ILNVLNLKAFDFYK HHHHCCCCHHHHHH c2-5 boundary middle|RB_A; 0.0 Bad: -27.791 cosmic_phi
26 nes_diso P06400 524 KAFDFYKVIESFIKAE CHHHHHHHHHHHHHHC c1aR-4 boundary middle|RB_A; 0.0 Weak: -30.786 cosmic_spacer Weak|
27 nes_diso P06400 646 SLSLFYKKVYRLAY HHHHHHHHHHHHHH c3-4 boundary boundary|RB_B; boundary|CYCLIN; 0.0 Bad: -28.952 cosmic_phi
28 nes_diso P06400 658 AYLRLNTLCERLLSEH HHHHHHHHHHHHCCCC c1aR-4 boundary boundary|RB_B; boundary|CYCLIN; 0.0 Bad: -23.812 cosmic_phi
29 nes_ord P06400 707 SMYGICKVKNIDLKF HHHHHHHHCCCCCCH c1b-5 ORD middle|RB_B; boundary|CYCLIN; 0.0 Bad: -27.871 cosmic_phi_to_LIVMF
30 nes_ord P06400 713 KVKNIDLKFKIIVT HHCCCCCCHHHHHH c3-4 ORD middle|RB_B; boundary|CYCLIN; 0.0 Medium: -33.353 cosmic_phi
31 nes_diso P06400 731 LPHAVQETFKRVLIKE CCHHHHHHHHCCCCCC c1a-4 boundary boundary|RB_B; boundary|CYCLIN; 0.0 Medium: -35.794 cosmic_spacer Medium|
32 nes_diso P06400 748 EYDSIIVFYNSVFMQR CCCCCCCCCCEEEECC c1d-4 boundary boundary|RB_B; boundary|CYCLIN; boundary|Rb_C; 0.14 Bad: -24.96 cosmic_phi_to_LIVMF
33 nes_diso P06400 757 NSVFMQRLKTNILQYA CEEEECCCCCHHHHCC c1aR-4 boundary boundary|RB_B; boundary|CYCLIN; boundary|Rb_C; 0.14 Bad: -23.159 cosmic_phi_to_LIVMF
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.