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P06756_ITAV | Integrin alpha-V   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • signal-peptide
  • transmembrane
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso P06756 12 GPRGLPLLLSGLLLPL CCCHHHHHHHHHHHHH c1a-4 boundary boundary|Int_alpha; 0.0 Bad: -29.407
2 low complexity P06756 14 RGLPLLLSGLLLPL CHHHHHHHHHHHHH c2-4 boundary boundary|Int_alpha; 0.0 Bad: -23.601
3 nes_diso P06756 16 LPLLLSGLLLPLCRAF HHHHHHHHHHHHHHHC c1aR-4 boundary boundary|Int_alpha; 0.0 Medium: -37.022 Medium|
4 nes_diso P06756 19 LLSGLLLPLCRAFNLDV HHHHHHHHHHHHCCCCC c1c-5 boundary boundary|Int_alpha; 0.0 Medium: -33.542 Medium|
5 nes_diso P06756 52 AVDFFVPSASSRMFLLV EEEEEECCCCCCEEEEE c1c-AT-5 boundary boundary|Int_alpha; 0.25 NA cosmic_spacer
6 nes_ord P06756 269 FVSGVPRAARTLGMVY EEEECCCCCCCCEEEE c1a-AT-5 ORD boundary|VCBS; small|Int_alpha; boundary|Int_alpha; 0.0 NA
7 nes_ord P06756 272 GVPRAARTLGMVYIYD ECCCCCCCCEEEEEEE c1a-AT-5 ORD boundary|VCBS; boundary|Int_alpha; 0.29 NA
8 nes_ord P06756 294 LYNFTGEQMAAYFGFSV EEEEEECCCCCCCCCEE c1c-AT-4 ORD boundary|VCBS; boundary|Int_alpha; 0.25 NA
9 nes_beta_ord P06756 335 SDGKLQEVGQVSVSL CCCCEEEEEEEEEEE c1b-4 ORD boundary|Int_alpha; boundary|Int_alpha; 1.0 NA cosmic_phi
10 nes_beta_ord P06756 355 DFQTTKLNGFEVFA CCCEEEEECCCCCC c2-AT-5 ORD boundary|Int_alpha; boundary|Int_alpha; 0.71 NA
11 nes_ord P06756 362 NGFEVFARFGSAIAPLG ECCCCCCCCCCCCCCCC c1cR-5 ORD boundary|Int_alpha; boundary|Int_alpha; 0.0 NA cosmic_spacer
12 nes_beta_ord P06756 448 GYPDLIVGAFGVDR CCCCEEEEECCCCE c2-4 ORD boundary|Int_alpha; small|Int_alpha; boundary|Integrin_alpha2; 0.71 NA cosmic_phi_to_LIVMF
13 nes_beta_diso P06756 466 RARPVITVNAGLEVYP EECCEEEEEEEEEECH c1d-4 boundary boundary|Integrin_alpha2; 1.0 NA cosmic_phi
14 nes_beta_diso P06756 494 PGTALKVSCFNVRF CCCCCEEEEEEEEE c2-4 boundary middle|Integrin_alpha2; 0.71 NA cosmic_phi
15 nes_beta_diso P06756 496 TALKVSCFNVRFCLKA CCCEEEEEEEEEEEEE c1aR-4 boundary middle|Integrin_alpha2; 1.0 NA cosmic_phi_to_LIVMF
16 nes_diso P06756 513 GKGVLPRKLNFQVELLL CCCCCCCCEEEEEEEEE c1c-4 boundary middle|Integrin_alpha2; 0.5 NA cosmic_spacer
17 nes_beta_diso P06756 521 LNFQVELLLDKLKQKG EEEEEEEEEECCCCCC c1aR-4 boundary middle|Integrin_alpha2; 0.86 NA
18 nes_diso P06756 673 LIVSIPLQADFIGVVR EEEECCCCCEEEEEEC c1a-AT-5 boundary middle|Integrin_alpha2; 0.29 NA cosmic_spacer
19 nes_diso P06756 715 NPMKAGTQLLAGLRFSV CCCCCCCEEEEEEEEEE c1c-AT-4 boundary middle|Integrin_alpha2; 0.62 NA cosmic_spacer
20 nes_diso P06756 733 QQSEMDTSVKFDLQIQS CCCCCCCEEEEEEEEEE c1c-4 boundary middle|Integrin_alpha2; 0.62 NA cosmic_spacer
21 nes_diso P06756 752 LFDKVSPVVSHKVDLAV CCCCCCCCEEEEEEEEE c1c-5 boundary middle|Integrin_alpha2; 0.5 NA cosmic_spacer_Pro
22 nes_beta_diso P06756 760 VSHKVDLAVLAAVEIRG EEEEEEEEEEEEEEEEC c1c-4 boundary middle|Integrin_alpha2; 1.0 NA cosmic_spacer
23 nes_beta_diso P06756 801 DVGPVVQHIYELRN HCCCCEEEEEEEEE c3-4 boundary middle|Integrin_alpha2; 0.71 NA cosmic_spacer
24 nes_diso P06756 857 EINPLRIKISSLQT CCCCCCCCCCCCCC c3-4 boundary middle|Integrin_alpha2; 0.0 Bad: -18.841 cosmic_spacer
25 nes_diso P06756 898 DIHTLGCGVAQCLKIVC CCEEEECCCCEEEEEEE c1c-5 boundary boundary|Integrin_alpha2; 0.5 Medium: -38.288 cosmic_phi Medium|
26 nes_beta_ord P06756 950 LKSSASFNVIEFPY EEEEEEEEEECCCC c2-AT-4 ORD 1.0 NA cosmic_spacer
27 low complexity P06756 988 APMPVPVWVIILAVLA CCCCCCCCCCCCCCCC c1a-4 boundary 0.0 Medium: -38.229 cosmic_spacer
28 low complexity P06756 990 MPVPVWVIILAVLA CCCCCCCCCCCCCC c2-4 boundary 0.0 Bad: -26.713 cosmic_phi
29 low complexity P06756 993 PVWVIILAVLAGLLLLA CCCCCCCCCCCCCCCHH c1c-5 boundary 0.0 Weak: -30.977 cosmic_phi
30 low complexity P06756 994 VWVIILAVLAGLLLLAV CCCCCCCCCCCCCCHHH c1c-4 boundary 0.0 Weak: -32.928 cosmic_spacer
31 low complexity P06756 994 VWVIILAVLAGLLLLA CCCCCCCCCCCCCCHH c1a-4 boundary 0.0 Weak: -31.062 cosmic_spacer
32 nes_TM P06756 997 IILAVLAGLLLLAVLV CCCCCCCCCCCHHHHH c1a-5 boundary 0.0 Medium: -39.89 cosmic_spacer
33 low complexity P06756 1001 VLAGLLLLAVLVFV CCCCCCCHHHHHHH c2-5 boundary 0.0 Medium: -34.307
34 low complexity P06756 1002 LAGLLLLAVLVFVMYR CCCCCCHHHHHHHHHC c1a-4 boundary 0.0 Weak: -30.928 cosmic_phi_to_LIVMF
35 low complexity P06756 1002 LAGLLLLAVLVFVM CCCCCCHHHHHHHH c2-4 boundary 0.0 Bad: -29.825
36 low complexity P06756 1003 AGLLLLAVLVFVMYRM CCCCCHHHHHHHHHCC c1aR-4 boundary 0.0 Medium: -36.855 cosmic_spacer
37 nes_TM P06756 1007 LLAVLVFVMYRMGFFK CHHHHHHHHHCCCCCC c1a-5 boundary 0.0 Medium: -39.527 cosmic_phi
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.