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P07949_RET | Proto-oncogene tyrosine-protein kinase receptor Ret   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • signal-peptide
  • transmembrane
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso P07949 7 GAAGLRLLLLLLLP CHHHHHHHHHHHHH c2-4 boundary 0.0 Medium: -36.465 Medium|
2 low complexity P07949 14 LLLLLLPLLGKVALGL HHHHHHHHHHHHHHHC c1a-5 boundary 0.0 Medium: -35.695
3 nes_diso P07949 84 NWICIQEDTGLLYLNR CCEEEECCCCEEEEEC c1a-AT-4 boundary 0.43 NA cosmic_spacer
4 nes_beta_diso P07949 112 RNRGFPLLTVYLKV CCCCCEEEEEEEEE c2-4 boundary 0.71 Weak: -31.135 cosmic_spacer
5 low complexity P07949 115 GFPLLTVYLKVFLS CCEEEEEEEEEEEC c3-4 boundary 1.0 NA cosmic_phi
6 nes_diso P07949 143 ARVYFSFFNTSFPACS EEEEEEEECCCCCCCC c1aR-4 boundary boundary|Cadherin; 0.57 NA cosmic_phi
7 nes_ord P07949 241 AVCTVHAGAREEVVMVP EEEEEECCCEEEEEECE c1c-AT-5 ORD boundary|Cadherin; 0.62 NA cosmic_spacer
8 nes_ord P07949 287 RKEDTVVATLRVFD CCCCCEECEEEEEE c2-AT-4 ORD boundary|Cadherin; 0.57 NA cosmic_spacer
9 nes_beta_ord P07949 384 PGAGVLLLHFNVSV CCCCEEEEEEEEEE c2-4 ORD 0.86 NA
10 nes_beta_ord P07949 386 AGVLLLHFNVSVLPVS CCEEEEEEEEEECCEE c1aR-5 ORD 1.0 NA cosmic_spacer
11 low complexity P07949 387 GVLLLHFNVSVLPVSLHL CEEEEEEEEEECCEEEEC c4-5 ORD 0.75 NA cosmic_spacer
12 nes_beta_ord P07949 391 LHFNVSVLPVSLHLPS EEEEEEECCEEEECCC c1aR-4 ORD 0.71 NA cosmic_spacer
13 nes_ord P07949 415 RARRFAQIGKVCVEN CCCCCHHEEEEEECC c1b-4 ORD 0.57 Bad: -21.7 cosmic_phi_to_LIVMF
14 nes_beta_ord P07949 475 RPKCAELHYMVVAT CCCCCEEEEEEEEE c2-AT-4 ORD 0.71 NA cosmic_spacer
15 nes_diso P07949 569 HCDVVETQDINICP CCCHHHHCCCCCCC c2-AT-4 boundary 0.0 NA cosmic_spacer
16 nes_TM P07949 634 CRTVIAAAVLFSFIVSV HHHHHHHHHHHHHHHHH c1c-4 boundary 0.0 Weak: -32.468 cosmic_spacer
17 nes_TM P07949 638 IAAAVLFSFIVSVLLSA HHHHHHHHHHHHHHHHH c1c-4 boundary 0.0 Bad: -26.765 cosmic_spacer
18 nes_TM P07949 639 AAAVLFSFIVSVLLSA HHHHHHHHHHHHHHHH c1a-4 boundary 0.0 Bad: -24.984 cosmic_spacer
19 nes_TM P07949 640 AAVLFSFIVSVLLSAF HHHHHHHHHHHHHHHH c1aR-4 boundary 0.0 Bad: -24.198 cosmic_spacer
20 nes_TM P07949 643 LFSFIVSVLLSAFCIHC HHHHHHHHHHHHHHHHH c1c-5 boundary 0.0 Weak: -30.07 cosmic_spacer
21 nes_TM P07949 644 FSFIVSVLLSAFCIHC HHHHHHHHHHHHHHHH c1a-4 boundary 0.0 Bad: -29.869 cosmic_spacer
22 nes_TM P07949 644 FSFIVSVLLSAFCIHC HHHHHHHHHHHHHHHH c1aR-4 boundary 0.0 Bad: -27.674 cosmic_spacer
23 nes_TM P07949 646 FIVSVLLSAFCIHC HHHHHHHHHHHHHH c2-5 boundary 0.0 Bad: -26.394 cosmic_spacer
24 nes_diso P07949 693 RRPSLDSMENQVSVDA CCCCCCCCCCCCCCCC c1d-4 boundary boundary|PTKc_RET; boundary|Pkinase_Tyr; 0.0 Weak: -30.504 cosmic_phi_to_LIVMF Weak|
25 nes_diso P07949 700 MENQVSVDAFKILE CCCCCCCCCCCCCC c2-4 boundary boundary|PTKc_RET; boundary|Pkinase_Tyr; 0.0 Bad: -29.614 cosmic_phi_to_LIVMF
26 nes_beta_ord P07949 735 FGKVVKATAFHLKG CCEEEEEEEECCCC c2-AT-4 ORD boundary|PTKc_RET; boundary|Pkinase_Tyr; 1.0 NA cosmic_spacer
27 nes_ord P07949 765 SPSELRDLLSEFNVLK CHHHHHHHHHHHHHHH c1a-4 ORD middle|PTKc_RET; middle|Pkinase_Tyr; 0.0 Medium: -36.824 cosmic_phi
28 nes_ord P07949 768 ELRDLLSEFNVLKQ HHHHHHHHHHHHHH c3-4 ORD middle|PTKc_RET; middle|Pkinase_Tyr; 0.0 Medium: -35.896 cosmic_phi
29 nes_diso P07949 858 ISQGMQYLAEMKLVH HHHHHHHHHHCCCCC c1b-4 boundary middle|PTKc_RET; middle|Pkinase_Tyr; 0.0 Bad: -28.519 cosmic_phi_to_LIVMF
30 nes_ord P07949 871 VHRDLAARNILVAE CCHHHHHCCEEECC c2-AT-4 ORD middle|PTKc_RET; middle|Pkinase_Tyr; 0.14 NA cosmic_spacer
31 nes_ord P07949 884 EGRKMKISDFGLSR CCCCEEEECCCCCC c2-4 ORD middle|PTKc_RET; middle|Pkinase_Tyr; 0.57 Bad: -24.425 cosmic_spacer
32 nes_ord P07949 916 KWMAIESLFDHIYTTQ CCCCCHHHCCCCCCCC c1aR-4 ORD middle|PTKc_RET; middle|Pkinase_Tyr; 0.0 Bad: -29.946 cosmic_phi_to_LIVMF
33 low complexity P07949 936 SFGVLLWEIVTLGG CHHHHHHHHHHCCC c3-4 ORD middle|PTKc_RET; middle|Pkinase_Tyr; 0.0 NA cosmic_phi_to_LIVMF
34 nes_diso P07949 997 VFADISKDLEKMMVKR CHHHHHHHHHHHHHCC c1a-5 boundary boundary|PTKc_RET; boundary|Pkinase_Tyr; 0.0 Bad: -29.493 cosmic_phi
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.