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P09619_PGFRB | Platelet-derived growth factor receptor beta   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • signal-peptide
  • transmembrane
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso P09619 8 PALALKGELLLLSLLL HHHHHHHHHHHHHHHH c1a-4 boundary boundary|ig; 0.0 Medium: -37.091 cosmic_spacer Medium|
2 nes_diso P09619 12 LKGELLLLSLLLLL HHHHHHHHHHHHHH c2-4 boundary boundary|ig; 0.0 Weak: -32.796 cosmic_phi_to_LIVMF Weak|
3 low complexity P09619 13 KGELLLLSLLLLLE HHHHHHHHHHHHHC c2-4 boundary boundary|ig; 0.0 Weak: -30.2 cosmic_spacer
4 low complexity P09619 14 GELLLLSLLLLLEPQI HHHHHHHHHHHHCCCC c1aR-4 boundary boundary|ig; 0.0 NA cosmic_phi_to_LIVMF
5 nes_diso P09619 21 LLLLLEPQISQGLVVTP HHHHHCCCCCCCCEEEC c1c-5 boundary boundary|ig; 0.0 Weak: -32.335 Weak|
6 nes_diso P09619 38 PGPELVLNVSSTFVLTC CCCCEEECCCCCEEEEE c1c-4 boundary boundary|ig; 0.38 NA cosmic_spacer
7 nes_diso P09619 124 TVGFLPNDAEELFIFLT CCCCCCCCCCCCEEEEC c1c-AT-5 boundary boundary|ig; 0.0 NA cosmic_spacer
8 nes_diso P09619 124 TVGFLPNDAEELFIFL CCCCCCCCCCCCEEEE c1a-AT-5 boundary boundary|ig; 0.0 NA cosmic_spacer
9 nes_ord P09619 134 ELFIFLTEITEITIPC CCEEEECCCCEEEEEC c1a-5 ORD boundary|ig; 0.43 NA cosmic_spacer
10 nes_ord P09619 205 YVYRLQVSSINVSV EEEEECCCCCCCEE c2-5 ORD boundary|Ig_PDGFR-alphabeta; 0.29 NA cosmic_phi_to_LIVMF
11 nes_ord P09619 207 YRLQVSSINVSVNAVQ EEECCCCCCCEECCCC c1aR-5 ORD boundary|Ig_PDGFR-alphabeta; 0.14 NA cosmic_phi_to_LIVMF
12 nes_ord P09619 210 QVSSINVSVNAVQT CCCCCCCEECCCCE c3-4 ORD boundary|Ig_PDGFR-alphabeta; 0.29 NA cosmic_phi_to_LIVMF
13 nes_beta_diso P09619 227 QGENITLMCIVIGN CCCCEEEEEEEECC c2-4 boundary boundary|Ig_PDGFR-alphabeta; 0.86 NA cosmic_spacer
14 nes_beta_diso P09619 253 ESGRLVEPVTDFLLDM CCCCCEEEEEEEECCC c1a-4 boundary middle|Ig_PDGFR-alphabeta; 0.86 NA cosmic_spacer_Pro
15 nes_diso P09619 257 LVEPVTDFLLDMPYHIRS CEEEEEEEECCCCEEEEE c4-5 boundary middle|Ig_PDGFR-alphabeta; 0.5 NA cosmic_phi
16 nes_beta_diso P09619 257 LVEPVTDFLLDMPY CEEEEEEEECCCCE c3-4 boundary middle|Ig_PDGFR-alphabeta; 0.86 NA cosmic_phi
17 nes_beta_diso P09619 264 FLLDMPYHIRSILHIPS EECCCCEEEEEEEEECC c1c-5 boundary middle|Ig_PDGFR-alphabeta; 0.75 NA cosmic_phi
18 nes_diso P09619 264 FLLDMPYHIRSILH EECCCCEEEEEEEE c3-4 boundary middle|Ig_PDGFR-alphabeta; 0.57 NA cosmic_phi
19 nes_diso P09619 314 GYVRLLGEVGTLQFAE CEEEEECCCCCEEEEE c1a-4 boundary boundary|Ig_PDGFR-alphabeta; boundary|Ig4_PDGFR; 0.29 Medium: -34.605 Medium|
20 nes_beta_diso P09619 377 YVSELTLVRVKVAE EEEEEEEECCCHHH c2-5 boundary middle|Ig4_PDGFR; 0.71 NA cosmic_spacer
21 nes_diso P09619 395 TMRAFHEDAEVQLSFQL EEEEEECCCEEEEEEEE c1c-AT-5 boundary boundary|Ig4_PDGFR; boundary|Ig superfamily; 0.62 NA cosmic_spacer
22 nes_beta_diso P09619 401 EDAEVQLSFQLQINVPV CCCEEEEEEEEEECCCC c1c-4 boundary boundary|Ig4_PDGFR; boundary|Ig superfamily; 1.0 NA cosmic_spacer
23 nes_diso P09619 409 FQLQINVPVRVLELSE EEEEECCCCEEEEEEE c1a-4 boundary boundary|Ig4_PDGFR; boundary|Ig superfamily; 0.43 NA cosmic_phi_to_LIVMF
24 nes_diso P09619 411 LQINVPVRVLELSE EEECCCCEEEEEEE c2-4 boundary boundary|Ig4_PDGFR; boundary|Ig superfamily; 0.43 NA cosmic_phi_to_LIVMF
25 nes_beta_diso P09619 485 EEQEFEVVSTLRLQH CCCEEEEEEEECCEE c1b-4 boundary middle|Ig superfamily; 1.0 NA cosmic_spacer
26 nes_diso P09619 493 STLRLQHVDRPLSVRC EEECCEECCCCEEEEE c1aR-4 boundary boundary|Ig superfamily; 0.29 NA cosmic_phi_to_LIVMF
27 nes_ord P09619 510 LRNAVGQDTQEVIVVPH EEECCCCEEEEEEEECC c1c-AT-4 ORD boundary|Ig superfamily; 0.62 NA
28 nes_ord P09619 510 LRNAVGQDTQEVIVVP EEECCCCEEEEEEEEC c1a-AT-4 ORD boundary|Ig superfamily; 0.57 NA
29 low complexity P09619 524 VPHSLPFKVVVISA ECCCCCCCHHHHHH c2-4 boundary boundary|Ig superfamily; 0.0 Medium: -37.507
30 low complexity P09619 531 KVVVISAILALVVLTI CHHHHHHHHHHHHHHH c1a-5 boundary boundary|Ig superfamily; boundary|PTKc_PDGFR_beta; 0.0 NA cosmic_spacer
31 nes_TM P09619 535 ISAILALVVLTIISLII HHHHHHHHHHHHHHHHH c1c-4 boundary boundary|Ig superfamily; boundary|PTKc_PDGFR_beta; 0.0 NA cosmic_spacer
32 nes_TM P09619 535 ISAILALVVLTIIS HHHHHHHHHHHHHH c2-4 boundary boundary|Ig superfamily; boundary|PTKc_PDGFR_beta; 0.0 NA cosmic_spacer
33 low complexity P09619 538 ILALVVLTIISLIILI HHHHHHHHHHHHHHHH c1a-5 boundary boundary|Ig superfamily; boundary|PTKc_PDGFR_beta; 0.0 NA cosmic_spacer
34 low complexity P09619 542 VVLTIISLIILIMLWQ HHHHHHHHHHHHHHCC c1a-5 boundary boundary|Ig superfamily; boundary|PTKc_PDGFR_beta; 0.0 NA cosmic_spacer
35 nes_ord P09619 643 SEKQALMSELKIMS HHHHHHHHHHHHHH c2-AT-4 ORD middle|PTKc_PDGFR_beta; middle|Pkinase_Tyr; 0.0 NA cosmic_spacer
36 nes_ord P09619 654 IMSHLGPHLNVVNLLG HHHHHCCCCCHHHHHC c1a-5 ORD middle|PTKc_PDGFR_beta; middle|Pkinase_Tyr; 0.0 NA cosmic_phi_to_LIVMF
37 nes_diso P09619 793 NESPVLSYMDLVGFSY CCCCCCCHHHHHHHHH c1a-4 boundary middle|PTKc_PDGFR_beta; middle|Pkinase_Tyr; 0.0 NA cosmic_spacer
38 nes_diso P09619 799 SYMDLVGFSYQVANGM CHHHHHHHHHHHHHCH c1aR-4 boundary middle|PTKc_PDGFR_beta; middle|Pkinase_Tyr; 0.0 NA cosmic_phi_to_LIVMF
39 nes_diso P09619 802 DLVGFSYQVANGMEFLA HHHHHHHHHHHCHHHHH c1c-5 boundary middle|PTKc_PDGFR_beta; middle|Pkinase_Tyr; 0.0 NA cosmic_phi
40 nes_ord P09619 823 VHRDLAARNVLICE CCHHHHHHHEEEEC c2-AT-4 ORD middle|PTKc_PDGFR_beta; middle|Pkinase_Tyr; 0.14 NA cosmic_spacer
41 nes_diso P09619 836 EGKLVKICDFGLAR CCCEEEECCCCCCC c2-4 boundary middle|PTKc_PDGFR_beta; middle|Pkinase_Tyr; 0.57 NA cosmic_phi
42 nes_diso P09619 875 IFNSLYTTLSDVWS HHCCCCCCHHHHHH c3-4 boundary middle|PTKc_PDGFR_beta; middle|Pkinase_Tyr; 0.0 NA cosmic_spacer
43 low complexity P09619 888 SFGILLWEIFTLGG HHCEEEEEEHHCCC c3-4 boundary middle|PTKc_PDGFR_beta; middle|Pkinase_Tyr; 0.86 NA cosmic_spacer
44 nes_diso P09619 943 EKFEIRPPFSQLVLLLE CCCHHCCCHHHHHHHHH c1c-4 boundary boundary|PTKc_PDGFR_beta; boundary|Pkinase_Tyr; 0.0 NA cosmic_spacer
45 nes_diso P09619 943 EKFEIRPPFSQLVLLL CCCHHCCCHHHHHHHH c1a-4 boundary boundary|PTKc_PDGFR_beta; boundary|Pkinase_Tyr; 0.0 NA cosmic_spacer
46 nes_diso P09619 950 PFSQLVLLLERLLG CHHHHHHHHHHHHH c3-4 boundary boundary|PTKc_PDGFR_beta; boundary|Pkinase_Tyr; 0.0 NA cosmic_phi_to_LIVMF
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.