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P10398_ARAF | Serine/threonine-protein kinase A-Raf   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso P10398 14 PSRAVGTVKVYLPN CCCCCCEEEEECCC c2-AT-4 DISO boundary|RBD_ARAF; 0.57 NA cosmic_spacer
2 nes_diso P10398 27 NKQRTVVTVRDGMSVYD CCCCEEEEECCCCCHHH c1c-AT-4 DISO boundary|RBD_ARAF; 0.62 NA cosmic_spacer
3 nes_diso P10398 28 KQRTVVTVRDGMSVYD CCCEEEEECCCCCHHH c1d-4 DISO boundary|RBD_ARAF; 0.57 NA cosmic_phi
4 nes_diso P10398 37 DGMSVYDSLDKALKVRG CCCCHHHHHHHHHHHCC c1c-4 boundary boundary|RBD_ARAF; 0.0 Bad: -28.889 cosmic_phi
5 nes_diso P10398 83 GEELIVEVLEDVPLTMHN CCCEEEEEECCCCCCHHH c4-4 boundary boundary|RBD_ARAF; 0.5 NA cosmic_phi_to_LIVMF
6 nes_diso P10398 90 VLEDVPLTMHNFVR EECCCCCCHHHHHH c3-4 boundary boundary|RBD_ARAF; 0.0 Bad: -29.33 cosmic_phi
7 nes_diso P10398 98 MHNFVRKTFFSLAFCD HHHHHHCCCCCHHHHH c1a-4 boundary boundary|RBD_ARAF; 0.0 Medium: -36.832 cosmic_phi_to_LIVMF Medium|
8 nes_diso P10398 103 RKTFFSLAFCDFCLKF HCCCCCHHHHHHHHHH c1a-4 boundary boundary|RBD_ARAF; small|C1_1; 0.0 Medium: -34.458 cosmic_phi_to_LIVMF Medium|
9 nes_diso P10398 105 TFFSLAFCDFCLKF CCCCHHHHHHHHHH c2-5 boundary boundary|RBD_ARAF; small|C1_1; 0.0 Weak: -30.169 cosmic_phi_to_LIVMF Weak|
10 nes_diso P10398 107 FSLAFCDFCLKFLFHG CCHHHHHHHHHHHHCC c1aR-4 boundary boundary|RBD_ARAF; small|C1_1; 0.0 Bad: -23.14 cosmic_phi_to_LIVMF
11 nes_diso P10398 112 CDFCLKFLFHGFRCQT HHHHHHHHHCCCCCCC c1aR-4 boundary boundary|RBD_ARAF; small|C1_1; 0.0 Weak: -32.12 cosmic_phi_to_LIVMF Weak|
12 nes_diso P10398 136 CSSKVPTVCVDMST CCCCCCCCCCCHHH c2-AT-4 DISO 0.0 NA cosmic_spacer
13 nes_beta_ord P10398 329 WHGDVAVKVLKVSQ ECCCEEEEEECCCC c2-4 ORD boundary|STKc_A-Raf; boundary|Pkinase; 0.86 NA cosmic_phi_to_LIVMF
14 nes_ord P10398 353 NEMQVLRKTRHVNILL HHHHHHHHCCCCCEEH c1a-AT-4 ORD middle|STKc_A-Raf; middle|Pkinase; 0.0 NA cosmic_spacer
15 nes_ord P10398 360 KTRHVNILLFMGFMT HCCCCCEEHEEECCC c1b-4 ORD middle|STKc_A-Raf; middle|Pkinase; 0.57 NA cosmic_spacer
16 nes_ord P10398 393 HLHVADTRFDMVQLID HHHCCCCCCCHHHHHH c1a-AT-5 ORD middle|STKc_A-Raf; middle|Pkinase; 0.0 NA cosmic_spacer
17 nes_ord P10398 395 HVADTRFDMVQLIDVAR HCCCCCCCHHHHHHHHH c1c-AT-5 ORD middle|STKc_A-Raf; middle|Pkinase; 0.0 NA cosmic_spacer
18 nes_ord P10398 397 ADTRFDMVQLIDVAR CCCCCCHHHHHHHHH c1b-4 ORD middle|STKc_A-Raf; middle|Pkinase; 0.0 NA cosmic_phi_to_LIVMF
19 nes_diso P10398 437 LHEGLTVKIGDFGLAT ECCCCEEEECCCCCEE c1a-4 boundary middle|STKc_A-Raf; middle|Pkinase; 0.57 NA cosmic_spacer
20 nes_diso P10398 439 EGLTVKIGDFGLAT CCCEEEECCCCCEE c2-4 boundary middle|STKc_A-Raf; middle|Pkinase; 0.57 NA cosmic_spacer
21 nes_diso P10398 469 SVLWMAAEVIRMQD CCCCCCHHHHHCCC c3-4 boundary middle|STKc_A-Raf; middle|Pkinase; 0.0 Weak: -32.371 cosmic_spacer Weak|
22 nes_diso P10398 488 FQSDVYAYGVVLYE CHHHHHHHHHHHHH c2-AT-4 __ middle|STKc_A-Raf; middle|Pkinase; 0.0 NA cosmic_spacer
23 nes_diso P10398 538 CPKAMRRLLSDCLKFQR CCHHHHHHHHHHHHCCH c1c-4 boundary boundary|STKc_A-Raf; boundary|Pkinase; 0.0 Bad: -24.84 cosmic_phi_to_LIVMF
24 nes_diso P10398 555 EERPLFPQILATIELLQ HHCCCHHHHHHHHHHHH c1c-4 boundary boundary|STKc_A-Raf; boundary|Pkinase; 0.0 Weak: -32.064 cosmic_phi Weak|
25 nes_diso P10398 556 ERPLFPQILATIELLQ HCCCHHHHHHHHHHHH c1a-4 boundary boundary|STKc_A-Raf; boundary|Pkinase; 0.0 Medium: -34.508 cosmic_phi Medium|
26 nes_diso P10398 559 LFPQILATIELLQR CHHHHHHHHHHHHH c3-4 boundary boundary|STKc_A-Raf; boundary|Pkinase; 0.0 Bad: -27.002 cosmic_spacer_Pro
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.