P11940 | Polyadenylate-binding protein 1

P11940_PABP1 | Polyadenylate-binding protein 1 ProteinAtlas Cosmic Proviz Swissmodel

Cosmic Cancer Gene Census (CGC)

#	candidates	uniprotID	start#	sequence	secondary	class	loc_DISO	loc_CDD	beta	Ebind	Cosmic	TOTALscore(Ebind\|Stars)
1	nes_diso	P11940	11	ASLYVGDLHPDVTEAM	CEEEECCCCCCCCHHH	c1aR-4	boundary	boundary\|PABP-1234; boundary\|RRM1_I_PABPs;	0.14	Medium: -33.678		Medium\|
2	nes_ord	P11940	61	QPADAERALDTMNFDV	CHHHHHHHHHHHCCCE	c1a-AT-4	ORD	middle\|PABP-1234; boundary\|RRM1_I_PABPs; boundary\|RRM2_I_PABPs;	0.0	NA	cosmic_spacer E66K;D70N;D70E;M72V;
3	nes_diso	P11940	150	AAERAIEKMNGMLLND	HHHHHHHHHCCCEECC	c1a-AT-4	boundary	middle\|PABP-1234; boundary\|RRM2_I_PABPs;	0.0	NA	cosmic_spacer M158I;L162F;L162I;
4	nes_diso	P11940	151	AERAIEKMNGMLLND	HHHHHHHHCCCEECC	c1b-4	boundary	middle\|PABP-1234; boundary\|RRM2_I_PABPs;	0.0	NA	cosmic_phi_to_LIVMF M158I;L162F;L162I;
5	nes_diso	P11940	203	DDERLKDLFGKFGPALSV	CHHHHHHHHHHHCCEEEE	c4-4	boundary	middle\|PABP-1234; boundary\|RRM2_I_PABPs; boundary\|RRM3_I_PABPs;	0.0	Weak: -32.259	cosmic_phi_to_LIVMF F214S;L218V;	Weak\|
6	nes_diso	P11940	294	VNLYVKNLDDGIDDER	CCEEEECCCCCCCHHH	c1aR-4	boundary	middle\|PABP-1234; boundary\|RRM3_I_PABPs; boundary\|RRM4_I_PABPs;	0.29	Bad: -29.366	cosmic_phi_to_LIVMF L296F;R309C;
7	nes_ord	P11940	313	EFSPFGTITSAKVMMEG	HHCCCCCEEEEEEEEEC	c1c-AT-5	ORD	middle\|PABP-1234; boundary\|RRM4_I_PABPs;	0.62	NA	cosmic_spacer T319I;T319A;T321I;M326L;M326I;M327I;M327L;
8	nes_diso	P11940	562	LGERLFPLIQAMHPTLAG	HHHHHHHHHHHHCHHHHH	c4-4	boundary	middle\|PABP-1234;	0.0	Medium: -33.79	cosmic_phi R565W;Q571E;M573I;L577R;	Medium\|
9	nes_diso	P11940	573	MHPTLAGKITGMLLEI	HCHHHHHHHCEEEECC	c1a-4	boundary	middle\|PABP-1234;	0.14	Medium: -39.939	cosmic_phi L577R;T582A;G583R;G583D;	Medium\|
10	nes_diso	P11940	599	SPESLRSKVDEAVAVLQ	CHHHHHHHHHHHHHHHH	c1c-4	boundary	boundary\|PABP-1234;	0.0	Bad: -24.3	cosmic_spacer P600S;R604C;

candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
sequence: Hydrophobic positions are colored in red.
class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
loc_DISO: location of the segment with respect to the ordered/disordered regions
loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
beta: beta-strand content in the middle of the segment
Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.