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P12270_TPR | Nucleoprotein TPR   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso P12270 78 LRLELEKLNNQLKALT HHHHHHHHHHHHHHHH c1aR-5 DISO middle|DUF460 superfamily; 0.0 Bad: -28.864
2 nes_diso P12270 81 ELEKLNNQLKALTE HHHHHHHHHHHHHH c3-4 DISO middle|DUF460 superfamily; 0.0 Weak: -32.059 Weak|
3 nes_diso P12270 137 ELEYLTEDVKRLNE HHHHHHHHHHHHHH c3-4 DISO boundary|DUF460 superfamily; boundary|Smc; 0.0 Weak: -30.857 cosmic_spacer Weak|
4 nes_diso P12270 165 KLDELQASDVSVKY HHHHHHHHHHHHHH c2-AT-5 DISO boundary|DUF460 superfamily; boundary|Smc; 0.0 NA cosmic_spacer
5 nes_diso P12270 197 LNTELKTKTDELLALGR HHHHHHHHHHHHHHHHH c1c-AT-4 DISO boundary|DUF460 superfamily; middle|Smc; 0.0 NA cosmic_spacer
6 nes_diso P12270 232 EVSRLEEQMNGLKT HHHHHHHHHHHHHH c3-4 DISO middle|Smc; 0.0 Medium: -36.116 Medium|
7 nes_diso P12270 271 MEEKFHNELNAHIKLSN HHHHHHHHHHHHHHHHH c1c-4 DISO middle|Smc; 0.0 Bad: -25.709 cosmic_spacer
8 nes_diso P12270 443 EYERAQKAVASLSVKL HHHHHHHHHHHHHHHH c1a-AT-4 DISO middle|Smc; 0.0 NA cosmic_spacer
9 nes_diso P12270 492 QVKDLSQQIRVLLMEL HHHHHHHHHHHHHHHH c1a-5 DISO middle|Smc; 0.0 Medium: -36.533 cosmic_spacer Medium|
10 nes_diso P12270 568 EQETTSSKITELQLKL HHHHHHHHHHHHHHHH c1a-AT-4 DISO middle|Smc; 0.0 NA cosmic_spacer
11 nes_diso P12270 613 MYRILLSQTTGVAIPL HHHHHHHHCCCCCCCC c1a-AT-4 DISO middle|Smc; 0.0 NA cosmic_spacer
12 nes_diso P12270 696 QLEKLQEQVTDLRS HHHHHHHHHHHHHH c3-4 DISO middle|Smc; 0.0 Weak: -31.579 cosmic_spacer Weak|
13 nes_diso P12270 787 EKEMLKLSEVRLSQ HHHHHHHHHHHHHH c2-4 DISO middle|Smc; 0.0 Weak: -31.324 cosmic_phi_to_LIVMF Weak|
14 nes_diso P12270 840 QIEKLEHEISHLKK HHHHHHHHHHHHHH c3-4 DISO middle|Smc; 0.0 Bad: -23.276 cosmic_phi_to_LIVMF
15 nes_diso P12270 900 EIATLKQHLSNMEVQV HHHHHHHHHHHHHHCC c1a-5 DISO middle|Smc; 0.0 Medium: -35.985 cosmic_spacer Medium|
16 nes_diso P12270 978 KEKQVTEEVRKNIEVRL HHHHHHHHHHHHHHHHH c1c-4 DISO middle|Smc; boundary|PRK00409 superfamily; 0.0 Bad: -25.413 cosmic_spacer
17 nes_diso P12270 1025 AIESMEQQLSELKK HHHHHHHHHHHHHH c3-4 DISO boundary|Smc; middle|PRK00409 superfamily; boundary|TPR_MLP1_2; 0.0 Weak: -32.691 Weak|
18 nes_diso P12270 1032 QLSELKKTLSSVQN HHHHHHHHHHHHHH c3-4 DISO boundary|Smc; middle|PRK00409 superfamily; boundary|TPR_MLP1_2; 0.0 Weak: -31.591 cosmic_spacer Weak|
19 nes_diso P12270 1227 RVELLERELQELQD HHHHHHHHHHHHHH c3-4 DISO boundary|SidE superfamily; 0.0 Medium: -33.3 cosmic_phi_to_LIVMF Medium|
20 nes_diso P12270 1258 QHEELMKKTETMNVVM HHHHHHHHHHHHHHHH c1a-AT-4 DISO boundary|SidE superfamily; 0.0 NA cosmic_spacer
21 nes_diso P12270 1289 DLQQMQAKVRKLELDI HHHHHHHHHHHHHHHH c1a-5 DISO middle|SidE superfamily; 0.0 Medium: -36.646 cosmic_phi_to_LIVMF Medium|
22 nes_diso P12270 1367 RIQQLTEEIGRLKA HHHHHHHHHHHHHH c3-4 DISO middle|SidE superfamily; 0.0 Medium: -36.538 Medium|
23 nes_diso P12270 1395 LIQSLKEDLNKVRT HHHHHHHHHHHHHH c3-4 DISO middle|SidE superfamily; 0.0 Bad: -27.964 cosmic_spacer
24 nes_diso P12270 1413 IQKDLDAKIIDIQE HHHHHHHHHHHHHH c2-AT-4 DISO middle|SidE superfamily; 0.0 NA cosmic_spacer
25 nes_diso P12270 1420 KIIDIQEKVKTITQ HHHHHHHHHHHHHH c3-4 DISO middle|SidE superfamily; 0.0 Bad: -27.668 cosmic_spacer
26 nes_diso P12270 2090 PPQELGPPVQRIQMTR CCCCCCCCCCCCCCCC c1a-4 DISO 0.0 Bad: -14.199 cosmic_spacer
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.