HOME Exp-NES Cancer-NES Human-NES Documentation Contact
P12830_CADH1 | Cadherin-1   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • signal-peptide
  • transmembrane
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso P12830 4 WSRSLSALLLLLQVSS HHHHHHHHHHHHHHHH c1a-4 boundary boundary|Cadherin_pro; 0.0 Bad: -29.912
2 nes_diso P12830 10 ALLLLLQVSSWLCQEP HHHHHHHHHHHHCCCC c1aR-4 boundary boundary|Cadherin_pro; 0.0 Medium: -33.659 Medium|
3 nes_diso P12830 63 RQRTAYFSLDTRFKVGT CCCEEEEECCCCCEECC c1c-AT-4 boundary middle|Cadherin_pro; 0.5 NA cosmic_spacer
4 nes_diso P12830 71 LDTRFKVGTDGVITVKR CCCCCEECCCCEEEECC c1c-AT-4 boundary middle|Cadherin_pro; 0.38 NA cosmic_spacer
5 nes_diso P12830 102 AWDSTYRKFSTKVTLNT EECCCCCEEEEEEEEEE c1c-AT-4 boundary boundary|Cadherin_pro; 0.62 NA cosmic_spacer
6 nes_diso P12830 131 SVSGIQAELLTFPN CCCCCCCHHCCCCC c3-4 boundary boundary|Cadherin_pro; boundary|CA_like; 0.0 Bad: -24.669 cosmic_spacer
7 nes_diso P12830 238 NGNAVEDPMEILITVTD CCCCCCCCEEEEEEEEC c1c-4 boundary boundary|CA_like; boundary|Cadherin_repeat; 0.5 NA cosmic_phi
8 nes_diso P12830 315 NMFTINRNTGVISVVT CCEEEECCCCEEEECC c1a-AT-5 boundary middle|Cadherin_repeat; 0.43 NA cosmic_spacer
9 nes_diso P12830 334 DRESFPTYTLVVQA CCCCCCEEEEEEEE c2-AT-4 boundary middle|Cadherin_repeat; 0.57 NA cosmic_spacer
10 nes_beta_diso P12830 351 QGEGLSTTATAVITVTD CCCCCCEEEEEEEEEEC c1c-AT-4 boundary boundary|Cadherin_repeat; boundary|Cadherin_repeat; 0.75 NA cosmic_spacer
11 nes_beta_diso P12830 387 NEANVVITTLKVTD CCCCEEEEECEEEE c2-4 boundary boundary|Cadherin_repeat; boundary|Cadherin_repeat; 0.71 NA cosmic_spacer
12 nes_beta_ord P12830 431 NNDGILKTAKGLDFEA CCCEEEEEECEECCCC c1a-AT-4 ORD middle|Cadherin_repeat; 0.86 NA cosmic_spacer
13 nes_diso P12830 462 FEVSLTTSTATVTVDV CCCCCCCCEEEEEEEE c1a-AT-4 boundary boundary|Cadherin_repeat; boundary|Cadherin_repeat; 0.43 NA cosmic_spacer
14 nes_beta_diso P12830 469 STATVTVDVLDVNE CEEEEEEEEEECCC c2-4 boundary boundary|Cadherin_repeat; boundary|Cadherin_repeat; 1.0 NA cosmic_phi_to_LIVMF
15 nes_diso P12830 552 DFEHVKNSTYTALIIAT CCCCCCCCEEEEEEEEE c1c-AT-5 boundary middle|Cadherin_repeat; 0.5 NA cosmic_spacer
16 nes_beta_diso P12830 570 NGSPVATGTGTLLLILS CCCCCCEEEEEEEEEEE c1c-AT-4 boundary boundary|Cadherin_repeat; boundary|Cadherin; 0.75 NA cosmic_spacer_Pro
17 nes_beta_diso P12830 570 NGSPVATGTGTLLLIL CCCCCCEEEEEEEEEE c1a-AT-4 boundary boundary|Cadherin_repeat; boundary|Cadherin; 0.71 NA cosmic_spacer
18 nes_ord P12830 674 NKDQVTTLEVSVCD CCCCCCEEEEEEEC c2-AT-4 ORD boundary|Cadherin; 0.57 NA cosmic_spacer
19 nes_TM P12830 709 AILGILGGILALLILI CHHHHHHHHHHHHHHH c1a-5 boundary boundary|Cadherin; boundary|Cadherin_C; 0.0 Medium: -36.78 cosmic_phi
20 nes_TM P12830 710 ILGILGGILALLILIL HHHHHHHHHHHHHHHH c1a-5 boundary boundary|Cadherin; boundary|Cadherin_C; 0.0 Medium: -36.639 cosmic_spacer
21 low complexity P12830 713 ILGGILALLILILLLL HHHHHHHHHHHHHHHH c1a-5 boundary boundary|Cadherin; boundary|Cadherin_C; 0.0 Weak: -32.466
22 low complexity P12830 716 GILALLILILLLLLFL HHHHHHHHHHHHHHHH c1a-5 boundary boundary|Cadherin; boundary|Cadherin_C; 0.0 Medium: -38.624
23 low complexity P12830 717 ILALLILILLLLLFLR HHHHHHHHHHHHHHHC c1a-5 boundary boundary|Cadherin; boundary|Cadherin_C; 0.0 Medium: -37.288
24 nes_diso P12830 765 QDFDLSQLHRGLDARP CCCCCCCCCCCCCCCC c1aR-4 DISO middle|Cadherin_C; 0.0 Medium: -37.394 cosmic_spacer Medium|
25 nes_diso P12830 783 TRNDVAPTLMSVPRYLPR CCCCCCCCCCCCCCCCCC c4-4 DISO middle|Cadherin_C; 0.0 Bad: -23.536 cosmic_phi_to_LIVMF
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.