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P16234_PGFRA | Platelet-derived growth factor receptor alpha   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • signal-peptide
  • transmembrane
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso P16234 7 AFLVLGCLLTGLSLIL HHHHHHHHHHHHHHHH c1a-5 boundary boundary|Ig_3; 0.0 Medium: -39.54 cosmic_spacer Medium|
2 nes_diso P16234 14 LLTGLSLILCQLSLPS HHHHHHHHHCCCCCCE c1a-5 boundary boundary|Ig_3; 0.0 Weak: -32.509 cosmic_spacer Weak|
3 nes_diso P16234 34 ENEKVVQLNSSFSLRC CCCEEECCCCCEEEEE c1d-4 boundary boundary|Ig_3; 0.29 NA cosmic_spacer
4 nes_beta_diso P16234 76 NNSGLFVTVLEVSS CCCCEEEEEEEECC c2-4 boundary boundary|Ig_3; 0.86 NA cosmic_spacer
5 nes_diso P16234 125 DVAFVPLGMTDYLVIVE CCCCCCCCCCCCEEEEC c1c-5 boundary boundary|Ig_3; 0.0 Weak: -32.786 cosmic_spacer Weak|
6 nes_beta_diso P16234 197 KFQTIPFNVYALKA EEEEEEEEEEEEEC c3-4 boundary boundary|Ig_PDGFR-alphabeta; 1.0 NA
7 nes_beta_diso P16234 254 KGKGITMLEEIKVPS CCCEEEEEEEEECCC c1b-4 boundary middle|Ig_PDGFR-alphabeta; 1.0 NA cosmic_phi_to_LIVMF
8 nes_beta_diso P16234 265 KVPSIKLVYTLTVPE ECCCEEEEEEEEECC c1b-5 boundary middle|Ig_PDGFR-alphabeta; 1.0 NA cosmic_phi
9 nes_beta_diso P16234 295 ATREVKEMKKVTISV CCCCEEEEEEEEEEE c1b-4 boundary boundary|Ig_PDGFR-alphabeta; boundary|Ig4_PDGFR; 1.0 NA cosmic_phi_to_LIVMF
10 nes_diso P16234 313 GFIEIKPTFSQLEA CEEEEECCCCCEEE c3-4 boundary boundary|Ig_PDGFR-alphabeta; boundary|Ig4_PDGFR; 0.43 Medium: -38.56 cosmic_phi_to_LIVMF Medium|
11 nes_diso P16234 325 EAVNLHEVKHFVVEVR EEECCCCCEEEEEEEE c1aR-5 __ boundary|Ig_PDGFR-alphabeta; boundary|Ig4_PDGFR; 0.43 NA cosmic_spacer
12 nes_beta_diso P16234 328 NLHEVKHFVVEVRA CCCCCEEEEEEEEE c3-4 boundary boundary|Ig_PDGFR-alphabeta; boundary|Ig4_PDGFR; 0.71 NA cosmic_spacer
13 nes_diso P16234 346 RISWLKNNLTLIEN CEEEEECCCCCCCC c3-4 boundary middle|Ig4_PDGFR; 0.43 Bad: -27.687 cosmic_spacer_Pro
14 nes_beta_diso P16234 359 NLTEITTDVEKIQE CCCEEEECEEEEEE c3-4 boundary middle|Ig4_PDGFR; 0.86 NA cosmic_spacer
15 nes_diso P16234 409 LLTQVPSSILDLVD EEECCCCEEEECCC c3-4 boundary boundary|Ig4_PDGFR; boundary|Ig_TrkABC_d4; 0.43 NA cosmic_phi_to_LIVMF
16 nes_diso P16234 486 GRVTFAKVEETIAVRC EEEEEECCCCCEEEEE c1aR-4 boundary boundary|Ig_TrkABC_d4; 0.29 NA cosmic_phi_to_LIVMF
17 nes_diso P16234 513 ELKLVAPTLRSELTVAA EEEEECCCCCHHHHHHH c1c-5 boundary boundary|Ig_TrkABC_d4; 0.12 Weak: -30.114 cosmic_phi_to_LIVMF Weak|
18 nes_TM P16234 523 SELTVAAAVLVLLVIVI HHHHHHHHHHHHHHHHH c1c-4 boundary boundary|Ig_TrkABC_d4; boundary|PTKc_PDGFR_alpha; 0.0 Medium: -35.688 cosmic_phi_to_LIVMF
19 nes_TM P16234 523 SELTVAAAVLVLLVIV HHHHHHHHHHHHHHHH c1a-4 boundary boundary|Ig_TrkABC_d4; boundary|PTKc_PDGFR_alpha; 0.0 Medium: -37.689 cosmic_phi_to_LIVMF
20 low complexity P16234 527 VAAAVLVLLVIVIISL HHHHHHHHHHHHHHHH c1a-4 boundary boundary|Ig_TrkABC_d4; boundary|PTKc_PDGFR_alpha; 0.0 Medium: -34.632 cosmic_spacer
21 low complexity P16234 527 VAAAVLVLLVIVII HHHHHHHHHHHHHH c2-4 boundary boundary|Ig_TrkABC_d4; boundary|PTKc_PDGFR_alpha; 0.0 Strong: -42.738 cosmic_phi_to_LIVMF
22 low complexity P16234 528 AAAVLVLLVIVIISLIV HHHHHHHHHHHHHHHHH c1c-4 boundary boundary|Ig_TrkABC_d4; boundary|PTKc_PDGFR_alpha; 0.0 Medium: -33.786 cosmic_phi
23 low complexity P16234 528 AAAVLVLLVIVIIS HHHHHHHHHHHHHH c2-4 boundary boundary|Ig_TrkABC_d4; boundary|PTKc_PDGFR_alpha; 0.0 Bad: -29.488 cosmic_phi_to_LIVMF
24 low complexity P16234 529 AAVLVLLVIVIISLIV HHHHHHHHHHHHHHHH c1a-4 boundary boundary|Ig_TrkABC_d4; boundary|PTKc_PDGFR_alpha; 0.0 Bad: -28.891 cosmic_phi
25 low complexity P16234 531 VLVLLVIVIISLIVLV HHHHHHHHHHHHHHHH c1a-5 boundary boundary|Ig_TrkABC_d4; boundary|PTKc_PDGFR_alpha; 0.0 Medium: -36.452 cosmic_phi
26 low complexity P16234 532 LVLLVIVIISLIVLVV HHHHHHHHHHHHHHHH c1a-5 boundary boundary|Ig_TrkABC_d4; boundary|PTKc_PDGFR_alpha; 0.0 Medium: -36.756 cosmic_phi_to_LIVMF
27 low complexity P16234 534 LLVIVIISLIVLVVIW HHHHHHHHHHHHHHHH c1a-5 boundary boundary|PTKc_PDGFR_alpha; 0.0 Medium: -36.88 cosmic_phi
28 low complexity P16234 535 LVIVIISLIVLVVIWK HHHHHHHHHHHHHHHH c1a-5 boundary boundary|PTKc_PDGFR_alpha; 0.0 Bad: -29.962 cosmic_phi_to_LIVMF
29 nes_diso P16234 636 SEKQALMSELKIMT HHHHHHHHHHHHHH c2-AT-4 boundary middle|PTKc_PDGFR_alpha; middle|Pkinase_Tyr; 0.0 NA cosmic_spacer
30 nes_diso P16234 647 IMTHLGPHLNIVNLLG HHHHHCCCCCHHHHHC c1a-5 boundary middle|PTKc_PDGFR_alpha; middle|Pkinase_Tyr; 0.0 Bad: -26.877 cosmic_phi_to_LIVMF
31 nes_diso P16234 791 TLLDLLSFTYQVARGM CHHHHHHHHHHHHHHH c1aR-4 boundary middle|PTKc_PDGFR_alpha; middle|Pkinase_Tyr; 0.0 Bad: -27.124 cosmic_phi_to_LIVMF
32 nes_diso P16234 794 DLLSFTYQVARGMEFLA HHHHHHHHHHHHHHHHH c1c-5 boundary middle|PTKc_PDGFR_alpha; middle|Pkinase_Tyr; 0.0 Bad: -23.235 cosmic_phi_to_LIVMF
33 nes_ord P16234 815 VHRDLAARNVLLAQ CCHHHHHHHEEEEC c2-AT-4 ORD middle|PTKc_PDGFR_alpha; middle|Pkinase_Tyr; 0.14 NA cosmic_spacer
34 nes_diso P16234 828 QGKIVKICDFGLAR CCCEEEECHHCCCC c2-4 boundary middle|PTKc_PDGFR_alpha; middle|Pkinase_Tyr; 0.57 NA cosmic_spacer
35 nes_diso P16234 867 IFDNLYTTLSDVWS HHHHHCCCHHHCHH c3-4 boundary middle|PTKc_PDGFR_alpha; middle|Pkinase_Tyr; 0.0 Medium: -34.142 cosmic_phi_to_LIVMF Medium|
36 nes_ord P16234 897 PGMMVDSTFYNKIKSGY CCCCCCHHHHHHHHCCC c1cR-4 ORD middle|PTKc_PDGFR_alpha; middle|Pkinase_Tyr; 0.0 NA cosmic_spacer
37 nes_ord P16234 917 KPDHATSEVYEIMVKC CCCCCCHHHHHHHHHH c1a-AT-4 ORD middle|PTKc_PDGFR_alpha; boundary|Pkinase_Tyr; 0.0 NA cosmic_spacer
38 nes_diso P16234 942 SFYHLSEIVENLLP CHHHHHHHHHHHCC c3-4 boundary boundary|PTKc_PDGFR_alpha; boundary|Pkinase_Tyr; 0.0 Bad: -25.267 cosmic_spacer
39 nes_diso P16234 1066 TIEDIDMMDDIGIDS CCCCCCCCCCCCCCC c1b-5 DISO 0.0 Weak: -30.863 cosmic_phi_to_LIVMF Weak|
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.