P18074 | General transcription and DNA repair factor IIH helicase subunit XPD

P18074_ERCC2 | General transcription and DNA repair factor IIH helicase subunit XPD ProteinAtlas Cosmic Proviz Swissmodel

Cosmic Cancer Gene Census (CGC)

#	candidates	uniprotID	start#	sequence	secondary	class	loc_DISO	loc_CDD	beta	Ebind	Cosmic	TOTALscore(Ebind\|Stars)
1	nes_diso	P18074	38	GVLEMPSGTGKTVSLLA	CCCCCCCCCHHHHHHHH	c1c-AT-5	boundary	middle\|rad3; boundary\|DEAHc_XPD;	0.0	NA	cosmic_spacer M42V;S44L;T46S;G47R;T49A;T49I;L53W;
2	nes_diso	P18074	46	TGKTVSLLALIMAY	CHHHHHHHHHHHHH	c2-4	boundary	middle\|rad3; boundary\|DEAHc_XPD;	0.0	Bad: -29.841	cosmic_phi G47R;T49A;T49I;L53W;A54T;L55Q;
3	nes_diso	P18074	76	TVPEIEKVIEELRK	CHHHHHHHHHHHHH	c3-4	boundary	middle\|rad3; middle\|DEAHc_XPD;	0.0	Bad: -19.798	cosmic_phi V77E;E79D;I80T;K82N;V83M;E85Q;E86Q; R88Q;
4	nes_diso	P18074	79	EIEKVIEELRKLLNFYE	HHHHHHHHHHHHHHHHH	c1c-5	boundary	middle\|rad3; middle\|DEAHc_XPD;	0.0	Medium: -34.614	cosmic_phi I80T;K82N;V83M;E85Q;E86Q;R88Q;L91P;	Medium\|
5	nes_diso	P18074	79	EIEKVIEELRKLLN	HHHHHHHHHHHHHH	c3-4	boundary	middle\|rad3; middle\|DEAHc_XPD;	0.0	Medium: -39.525	cosmic_phi_to_LIVMF I80T;K82N;V83M;E85Q;E86Q;R88Q;L91P;	Medium\|
6	nes_diso	P18074	98	EGEKLPFLGLALSS	CCCCCCCCEEECCC	c2-4	boundary	middle\|rad3; middle\|DEAHc_XPD;	0.29	Medium: -36.21	cosmic_spacer E100D;E100K;G106R;	Medium\|
7	nes_ord	P18074	238	NIDNVCIDSMSVNL	CHHHHHHHHHCEEC	c2-5	ORD	middle\|rad3; boundary\|DEAHc_XPD; boundary\|HBB;	0.0	Bad: -29.777	cosmic_phi_to_LIVMF D240H;V242F;V242I;S246Y;S246F;
8	nes_ord	P18074	262	NLETLQKTVLRIKE	HHHHHHHHHHHHHH	c3-4	ORD	middle\|rad3; boundary\|DEAHc_XPD; boundary\|HBB;	0.0	Bad: -26.951	cosmic_spacer T269M;R272S;
9	nes_diso	P18074	329	FLGFLRRLLEYVKW	HHHHHHHHHHHHHH	c3-4	boundary	middle\|rad3; middle\|HBB;	0.0	Bad: -24.525
10	nes_diso	P18074	353	SPPAFLSGLAQRVCIQR	CHHHHHHHHHHHHHHCC	c1c-4	boundary	middle\|rad3; middle\|HBB;	0.0	Bad: -22.327	cosmic_spacer P354L;
11	nes_diso	P18074	375	CAERLRSLLHTLEITD	HHHHHHHHHHHHHCCC	c1a-4	boundary	middle\|rad3; middle\|HBB;	0.0	Strong: -42.974	cosmic_phi E377K;R378H;R380W;L382M;L383M;L386V;I388T; T389N;	Strong\|
12	nes_diso	P18074	403	FATLVSTYAKGFTIII	HHHHHHCCCCCCEEEE	c1a-AT-4	boundary	middle\|rad3; boundary\|HBB;	0.0	NA	cosmic_spacer T415S;I416V;
13	nes_ord	P18074	431	PILHFSCMDASLAIKP	CEEEEEECCHHHHHHH	c1aR-4	ORD	middle\|rad3; boundary\|HBB;	0.43	Strong: -40.292	cosmic_spacer A440T;S441L;A443V;A443T;A443P;
14	nes_ord	P18074	443	AIKPVFERFQSVIITS	HHHHHHHHCCEEEECC	c1a-5	ORD	middle\|rad3; boundary\|HBB;	0.14	Bad: -28.035	cosmic_phi_to_LIVMF F451L;
15	nes_ord	P18074	477	TMATFTMTLARVCLCP	EEEECCEECCHHHEEE	c1a-5	ORD	middle\|rad3; boundary\|SF2_C_XPD;	0.29	NA	cosmic_spacer T484A;T484M;T484R;
16	nes_ord	P18074	523	LLLEMSAVVPDGIVAFF	HHHHHHHHCCCCEEEEC	c1cR-5	ORD	middle\|rad3; middle\|SF2_C_XPD;	0.0	NA	cosmic_spacer P532S;D533N;
17	nes_ord	P18074	596	LLSVARGKVSEGIDFVH	EEEEECCCCCCCCCCCC	c1c-AT-5	ORD	middle\|rad3; middle\|SF2_C_XPD;	0.12	NA	cosmic_spacer S598L;E606Q;G607A;I608F;D609E;F610Y;
18	nes_ord	P18074	633	LKARLEYLRDQFQIRE	HHHHHHHHHHHCCCCH	c1d-4	ORD	middle\|rad3; middle\|SF2_C_XPD;	0.0	Bad: -28.329	cosmic_spacer R636L;R647C;
19	nes_ord	P18074	664	VGRAIRGKTDYGLMVFA	HHHHHCCCCCCEEEEEE	c1c-AT-4	ORD	middle\|rad3; boundary\|SF2_C_XPD;	0.12	NA	cosmic_spacer G665D;G665R;I668F;G670D;G675S;G675D;M677V; M677T;
20	nes_diso	P18074	702	TDANLNLTVDEGVQVAK	CCCCCCCCHHHHHHHHH	c1c-4	boundary	boundary\|rad3; boundary\|SF2_C_XPD;	0.0	Bad: -28.134	cosmic_spacer E712K;E712D;G713S;
21	nes_diso	P18074	730	REDQLGLSLLSLEQ	CCCCCCCCCCCHHH	c2-4	boundary	boundary\|rad3;	0.0	Weak: -32.422	cosmic_phi L739R;L739H;	Weak\|

candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
sequence: Hydrophobic positions are colored in red.
class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
loc_DISO: location of the segment with respect to the ordered/disordered regions
loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
beta: beta-strand content in the middle of the segment
Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.