P19447 | General transcription and DNA repair factor IIH helicase subunit XPB

P19447_ERCC3 | General transcription and DNA repair factor IIH helicase subunit XPB ProteinAtlas Cosmic Proviz Swissmodel

Cosmic Cancer Gene Census (CGC)

#	candidates	uniprotID	start#	sequence	secondary	class	loc_DISO	loc_CDD	beta	Ebind	Cosmic	TOTALscore(Ebind\|Stars)
1	nes_ord	P19447	88	AFSPVYKYAQDFLVAI	CCCCCHHHHHHHHHHH	c1a-AT-5	ORD	middle\|rad25; boundary\|Helicase_C_3;	0.0	NA	cosmic_spacer S90C;P91S;V92I;Y95H;V101A;
2	nes_ord	P19447	115	EYKLTAYSLYAAVSVGL	EEECCHHHHHHHHHCCC	c1c-AT-4	ORD	middle\|rad25; middle\|Helicase_C_3;	0.0	NA	cosmic_spacer Y116C;A125V;G130E;
3	nes_ord	P19447	144	SKTGVPDGIMQFIKLCT	HCCCCCHHHHHHHHHHH	c1c-4	ORD	middle\|rad25; middle\|Helicase_C_3;	0.0	NA	cosmic_spacer P149S;
4	nes_diso	P19447	240	GKSDIPMDLFDFYE	CCCCCCCCHHHHHH	c2-4	boundary	middle\|rad25;	0.0	Weak: -32.95	cosmic_spacer D243V;P245L;	Weak\|
5	nes_diso	P19447	244	IPMDLFDFYEQMDKDE	CCCCHHHHHHHCCCCC	c1aR-4	boundary	middle\|rad25;	0.0	Bad: -28.163	cosmic_spacer D258E;E259D;
6	nes_diso	P19447	268	VSFEVKQEMIEELQKRC	EEEEECHHHHHHHHHHH	c1cR-4	boundary	middle\|rad25;	0.12	Bad: -25.808	cosmic_spacer E278K;E279A;
7	nes_ord	P19447	435	WGLMILDEVHTIPAKMFR	EEEEEEECCCCCCHHHHH	c4-4	ORD	middle\|rad25; middle\|DEXHc_XPB;	0.25	NA	cosmic_phi_to_LIVMF I439M;H444R;
8	nes_ord	P19447	519	YREYVAIKTKKRILLYT	HHHHHHCCCHHHHHHHH	c1c-AT-4	ORD	middle\|rad25; middle\|ERCC3_RAD25_C;	0.0	NA	cosmic_spacer R520Q;V523M;A524T;K528N;I531M;
9	nes_ord	P19447	537	NPNKFRACQFLIKF	CHHHHHHHHHHHHH	c2-AT-4	ORD	middle\|rad25; middle\|ERCC3_RAD25_C;	0.0	NA	cosmic_spacer F541V;Q545H;
10	nes_ord	P19447	557	KIIVFADNVFALKE	CEEEECCCHHHHHH	c3-4	ORD	middle\|rad25; middle\|ERCC3_RAD25_C;	0.29	NA	cosmic_phi_to_LIVMF I558L;

candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
sequence: Hydrophobic positions are colored in red.
class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
loc_DISO: location of the segment with respect to the ordered/disordered regions
loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
beta: beta-strand content in the middle of the segment
Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.