P19484_TFEB | Transcription factor EB   ProteinAtlas   Cosmic   Proviz   Swissmodel

• Cosmic Cancer Gene Census (CGC)

#	candidates	uniprotID	start#	sequence	secondary	class	loc_DISO	loc_CDD	beta	Ebind	Score(NES)	Cosmic	Score(Cosmic)	TOTALscore(Ebind|Stars)
1	nes_diso	P19484	153	PERELDDVIDNIMRLDD	CHHHCHHHHHCCHHHCC	c1c-4	DISO	boundary|MITF_TFEB_C_3_N;	0.0	Bad: -28.66		cosmic_spacer D158G;
2	nes_diso	P19484	156	ELDDVIDNIMRLDD	HCHHHHHCCHHHCC	c3-4	DISO	boundary|MITF_TFEB_C_3_N;	0.0	Bad: -29.019		cosmic_spacer D158G;
3	nes_diso	P19484	163	NIMRLDDVLGYINPEMQM	CCHHHCCCCCCCCCCCCC	c4-5	DISO	boundary|MITF_TFEB_C_3_N;	0.0	Weak: -31.13		cosmic_phi_to_LIVMF L171F;		Weak|
4	nes_diso	P19484	163	NIMRLDDVLGYINPEM	CCHHHCCCCCCCCCCC	c1aR-4	DISO	boundary|MITF_TFEB_C_3_N;	0.0	Bad: -29.584		cosmic_spacer L171F;
5	nes_diso	P19484	163	NIMRLDDVLGYINP	CCHHHCCCCCCCCC	c3-4	DISO	boundary|MITF_TFEB_C_3_N;	0.0	Bad: -27.453		cosmic_phi_to_LIVMF L171F;
6	nes_diso	P19484	196	SDPQVTASLVGVTS	CCCCCCCCCCCCCC	c2-AT-4	DISO		0.0	NA		cosmic_spacer P198S;T208A;
7	nes_diso	P19484	247	RRFNINDRIKELGMLI	CCCCCCHHHHHHHCCC	c1a-4	DISO	boundary|HLH; boundary|HLH;	0.0	Weak: -31.5		cosmic_spacer R254C;R254H;E257Q;		Weak|
8	nes_diso	P19484	257	ELGMLIPKANDLDVRW	HHHCCCCCCCCCCCCC	c1a-AT-5	DISO	boundary|HLH; boundary|HLH;	0.0	NA		cosmic_spacer A265V;
9	nes_diso	P19484	308	TNKQLWLRIQELEMQA	HHHHHHHHHHHHHHHH	c1a-4	DISO	boundary|HLH; boundary|HLH;	0.0	Medium: -37.835		cosmic_spacer R315C;		Medium|
10	nes_diso	P19484	310	KQLWLRIQELEMQA	HHHHHHHHHHHHHH	c2-4	DISO	boundary|HLH; boundary|HLH;	0.0	Bad: -29.782		cosmic_spacer R315C;
11	nes_diso	P19484	334	SGMNMAELAQQVVKQE	CCCCHHHHHHHHCCCC	c1aR-4	DISO		0.0	Weak: -31.418		cosmic_spacer E340K;A342S;E349D;		Weak|
12	nes_diso	P19484	431	KDLDLMLLDDSLLPLA	CCHHHHHHCCCCCCCC	c1aR-5	DISO		0.0	Bad: -27.804		cosmic_spacer D434N;P444L;

• candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
• sequence: Hydrophobic positions are colored in red.
• class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
• loc_DISO: location of the segment with respect to the ordered/disordered regions
• loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
• beta: beta-strand content in the middle of the segment
• Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
• Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
• Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
• Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
• TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.