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P23467_PTPRB | Receptor-type tyrosine-protein phosphatase beta   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • signal-peptide
  • transmembrane
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso P23467 10 LWITLSLLQTGLAEPE EEEEEECCCCCCCCCC c1aR-4 boundary boundary|fn3; 0.29 NA
2 nes_diso P23467 81 NLQDLQAGTIYNFRIIS EECCCCCCCEEEEEEEE c1c-AT-5 boundary boundary|fn3; boundary|FN3; boundary|fn3; 0.38 NA cosmic_spacer
3 nes_beta_diso P23467 85 LQAGTIYNFRIISLDE CCCCCEEEEEEEEECC c1a-AT-4 boundary boundary|fn3; boundary|FN3; boundary|fn3; 0.86 NA cosmic_spacer
4 nes_beta_diso P23467 86 QAGTIYNFRIISLDE CCCCEEEEEEEEECC c1b-4 boundary boundary|fn3; boundary|FN3; boundary|fn3; 1.0 NA cosmic_spacer
5 nes_diso P23467 198 NGSTVPSPVKDIGIST EEEECCCCCEEEEEEE c1a-4 boundary boundary|FN3; boundary|fn3; boundary|FN3; boundary|fn3; 0.29 Medium: -35.517 Medium|
6 nes_beta_diso P23467 207 KDIGISTKANSLLISW EEEEEEEECCEEEEEE c1a-AT-4 boundary boundary|FN3; boundary|fn3; boundary|FN3; boundary|fn3; 0.71 NA
7 nes_beta_diso P23467 230 ERYRLMLMDKGILVHG CEEEEEEEECCCEEEE c1d-4 boundary middle|FN3; middle|fn3; 0.71 NA cosmic_phi_to_LIVMF
8 nes_diso P23467 257 FHGLTPGYLYNLTVMT ECCCCCCCEEEEEEEE c1a-AT-4 boundary boundary|FN3; boundary|fn3; boundary|FN3; boundary|FN3; 0.43 NA cosmic_spacer
9 nes_diso P23467 286 RTAPMEVSNLKVTN EECCCCCCCEEEEE c2-4 boundary boundary|FN3; boundary|fn3; boundary|FN3; boundary|FN3; 0.14 Bad: -27.898 cosmic_spacer
10 nes_diso P23467 345 FKELVPGRLYQVTVSC ECCCCCCCEEEEEEEE c1a-4 boundary boundary|FN3; boundary|FN3; boundary|FN3; boundary|fn3; 0.43 Bad: -29.263 cosmic_spacer
11 nes_diso P23467 361 VSGELSAQKMAVGR EECCCEECEEEEEE c2-AT-4 boundary boundary|FN3; boundary|FN3; boundary|FN3; boundary|fn3; 0.57 NA cosmic_spacer
12 nes_diso P23467 368 QKMAVGRTFPDKVANLE CEEEEEEECCCCCCEEE c1cR-5 boundary boundary|FN3; boundary|FN3; boundary|FN3; boundary|fn3; 0.5 NA cosmic_spacer
13 nes_diso P23467 409 RILLFNDSVVLLNITV EEEEECCCCCEEEEEE c1a-5 boundary middle|FN3; middle|fn3; 0.29 NA cosmic_spacer
14 nes_diso P23467 462 QGRTVPLAVLQLRVKH EEECCCCCCCEEEEEE c1a-4 boundary boundary|FN3; boundary|fn3; boundary|FN3; boundary|fn3; 0.14 Medium: -33.642 cosmic_spacer Medium|
15 nes_diso P23467 462 QGRTVPLAVLQLRV EEECCCCCCCEEEE c2-4 boundary boundary|FN3; boundary|fn3; boundary|FN3; boundary|fn3; 0.0 Strong: -43.517 cosmic_spacer Strong|
16 nes_diso P23467 464 RTVPLAVLQLRVKH ECCCCCCCEEEEEE c2-4 boundary boundary|FN3; boundary|fn3; boundary|FN3; boundary|fn3; 0.29 Bad: -17.376 cosmic_spacer
17 nes_beta_diso P23467 494 WEKYIISLADRDLLLIH CCEEEEEEEECCCCEEE c1c-AT-4 __ middle|FN3; middle|fn3; 0.75 NA cosmic_spacer
18 nes_diso P23467 509 IHKSLSKDAKEFTFTD EEEEECCCCCEEEECC c1a-AT-4 boundary boundary|FN3; boundary|fn3; 0.29 NA cosmic_spacer
19 nes_diso P23467 549 KGRTVPAQVTDLHVAN EEEECCCCCCEEEEEE c1a-4 boundary boundary|FN3; boundary|fn3; boundary|fn3; 0.14 Bad: -27.194 cosmic_spacer
20 nes_beta_diso P23467 578 AQGDVEFYQVLLIH CCCCCEEEEEEEEE c2-4 boundary middle|fn3; 0.71 NA
21 nes_diso P23467 638 EGRTVPSSVSGVTVNN EEEECCCCCCCEEEEE c1a-4 boundary boundary|fn3; boundary|FN3; boundary|fn3; 0.0 Bad: -29.494 cosmic_spacer
22 nes_diso P23467 699 FSSLTPGRLYTVTITT ECCCCCCCEEEEEEEE c1a-AT-4 boundary boundary|FN3; boundary|fn3; boundary|FN3; boundary|fn3; 0.43 NA cosmic_spacer
23 nes_diso P23467 726 QERTVPDKVQGVSVSN EEECCCCCCCCEEEEE c1a-4 boundary boundary|FN3; boundary|fn3; boundary|FN3; boundary|fn3; 0.0 Weak: -31.819 Weak|
24 nes_diso P23467 787 FVQLVPGRLYSVTVTT ECCCCCCCEEEEEEEE c1a-5 boundary boundary|FN3; boundary|fn3; boundary|FN3; boundary|fn3; 0.43 Medium: -35.467 cosmic_spacer Medium|
25 nes_diso P23467 814 NGRTIPEPVKDLTLRN EEEECCCCCCCEEEEE c1a-4 boundary boundary|FN3; boundary|fn3; boundary|FN3; boundary|fn3; 0.0 Weak: -31.755 cosmic_spacer Weak|
26 nes_beta_diso P23467 847 DQYEIQLLFNDMKVFP CEEEEEEEECCCCCCC c1a-4 boundary middle|FN3; middle|fn3; 0.71 NA cosmic_spacer
27 nes_diso P23467 849 YEIQLLFNDMKVFP EEEEEEECCCCCCC c2-4 boundary middle|FN3; middle|fn3; 0.57 NA cosmic_phi
28 nes_diso P23467 850 EIQLLFNDMKVFPP EEEEEECCCCCCCC c3-4 boundary middle|FN3; middle|fn3; 0.43 Bad: -28.892 cosmic_spacer
29 nes_beta_diso P23467 895 VQQSAFIEGFTVPS CCCCEEEEEEECCC c2-AT-4 boundary boundary|FN3; boundary|fn3; boundary|FN3; boundary|fn3; 0.86 NA
30 nes_diso P23467 902 EGFTVPSAVKNIHISP EEEECCCCCCCCEEEC c1a-4 boundary boundary|FN3; boundary|fn3; boundary|FN3; boundary|fn3; 0.0 Weak: -30.139 cosmic_spacer Weak|
31 nes_diso P23467 975 MIASVSGSLKNQINVVG EEEEEECCCCCCEEEEE c1c-5 boundary boundary|FN3; boundary|fn3; boundary|fn3; 0.25 Medium: -33.61 cosmic_spacer Medium|
32 nes_diso P23467 1024 ERYDILLLTENGILLRN CEEEEEEEECCCCCCEE c1c-AT-4 boundary boundary|fn3; 0.62 NA cosmic_spacer
33 nes_diso P23467 1080 EGRTVPAAVTDLRITE EEECCCCCCCEEEEEE c1a-4 boundary boundary|fn3; boundary|fn3; 0.14 Weak: -32.005 cosmic_spacer Weak|
34 nes_diso P23467 1128 ERAQVDPLVQSFSFQN EEEEECCCCEEEEEEC c1a-4 boundary boundary|fn3; 0.43 NA cosmic_spacer
35 nes_diso P23467 1141 FQNLLQGRMYKMVIVTH EECCCCCCEEEEEEEEE c1c-4 boundary boundary|fn3; boundary|FN3; boundary|fn3; 0.5 NA
36 nes_diso P23467 1141 FQNLLQGRMYKMVIVT EECCCCCCEEEEEEEE c1a-4 boundary boundary|fn3; boundary|FN3; boundary|fn3; 0.43 Medium: -37.823 Medium|
37 nes_diso P23467 1164 ESFIFGRTVPASVSHLR CEEEEEEECCCCCCEEE c1cR-5 __ boundary|fn3; boundary|FN3; boundary|fn3; 0.5 NA cosmic_phi_to_LIVMF
38 nes_diso P23467 1197 ASGDFDFYELILYN CCCCCCEEEEEEEC c2-4 boundary middle|FN3; middle|fn3; 0.57 NA cosmic_spacer
39 nes_diso P23467 1265 SLMSFADIANTSLAITW CEEEEEECCCCEEEEEE c1c-AT-5 boundary boundary|FN3; boundary|fn3; boundary|FN3; boundary|fn3; 0.5 NA cosmic_spacer
40 nes_diso P23467 1388 ECRKMDTQEVEFSR EEEECCCCCEEEEE c2-AT-4 boundary middle|fn3; 0.29 NA cosmic_spacer
41 nes_diso P23467 1477 WFSDTNGAVKYFTVVV CCCCCCCCEEEEEEEE c1a-AT-5 boundary 0.43 NA cosmic_spacer
42 nes_diso P23467 1567 CDGPLKPHTAYRISIRA ECCCCCCCCEEEEEEEE c1c-AT-4 boundary 0.38 NA cosmic_spacer
43 nes_diso P23467 1584 FTQLFDEDLKEFTKPLYS EECCCCCCCCCCCCCEEE c4-4 boundary 0.0 Bad: -22.532 cosmic_spacer
44 nes_TM P23467 1619 AIEGVSAGLFLIGMLV CCCCCHHHHHHHHHHH c1a-5 boundary 0.0 Medium: -37.134 cosmic_phi
45 low complexity P23467 1626 GLFLIGMLVAVVALLI HHHHHHHHHHHHHHHH c1a-5 boundary 0.0 Bad: -29.582 cosmic_spacer
46 low complexity P23467 1628 FLIGMLVAVVALLICR HHHHHHHHHHHHHHHH c1a-5 boundary 0.0 Medium: -35.641 cosmic_spacer
47 nes_diso P23467 1684 KINQFEGHFMKLQA EHHHHHHHHHHHHH c3-4 DISO boundary|PTPc; 0.0 Medium: -37.3 Medium|
48 nes_diso P23467 1733 YNNILPYDATRVKLSN CCCCCCCCCCCCCCCC c1a-AT-4 boundary middle|PTPc; boundary|R-PTPc-B; 0.0 NA cosmic_spacer
49 nes_beta_diso P23467 1826 GDLILQMLSESVLPEW CCEEEEEEEECCCCCE c1aR-4 boundary middle|PTPc; middle|R-PTPc-B; 0.86 NA cosmic_phi
50 nes_diso P23467 1834 SESVLPEWTIREFKICG EECCCCCEEEEEEEEEC c1c-AT-4 boundary middle|PTPc; middle|R-PTPc-B; 0.62 NA cosmic_spacer
51 nes_diso P23467 1869 PDHGVPETTQSLIQFVR CCCCCCCCHHHHHHHHH c1c-AT-4 boundary middle|PTPc; middle|R-PTPc-B; 0.0 NA cosmic_spacer_Pro
52 nes_ord P23467 1879 SLIQFVRTVRDYINRSP HHHHHHHHHHHHHHCCC c1cR-4 ORD middle|PTPc; middle|R-PTPc-B; 0.0 Bad: -25.512
53 nes_ord P23467 1913 TFIALDRILQQLDSKD HHHHHHHHHHHHCCCC c1aR-4 ORD middle|PTPc; middle|R-PTPc-B; 0.0 Strong: -44.259 cosmic_spacer
54 nes_ord P23467 1913 TFIALDRILQQLDS HHHHHHHHHHHHCC c3-4 ORD middle|PTPc; middle|R-PTPc-B; 0.0 Weak: -32.733
55 nes_ord P23467 1928 DSVDIYGAVHDLRLHR CCCCCHHHHHHHHHCC c1a-4 ORD boundary|PTPc; boundary|R-PTPc-B; 0.0 NA cosmic_spacer
56 nes_diso P23467 1935 AVHDLRLHRVHMVQ HHHHHHHCCCCCCC c2-5 boundary boundary|PTPc; boundary|R-PTPc-B; 0.0 Weak: -32.663 Weak|
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.