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P23468_PTPRD | Receptor-type tyrosine-protein phosphatase delta   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • signal-peptide
  • transmembrane
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 low complexity P23468 3 HVARLLLLLLTFFLRT CHHHHHHHHHHHHHHC c1a-5 boundary boundary|I-set; 0.0 Medium: -37.992 cosmic_phi_to_LIVMF
2 nes_diso P23468 96 YECVASNNVGEISVST EEEEEECCCEEEEEEC c1a-AT-4 boundary boundary|I-set; 0.57 NA cosmic_spacer
3 nes_beta_diso P23468 249 PGGSVNITCVAVGS CCCCEEEEEEECCC c2-4 boundary boundary|Ig2_RPTP_IIa_LAR_like; boundary|Ig3_RPTP_IIa_LAR_like; 0.86 NA cosmic_phi_to_LIVMF
4 nes_beta_diso P23468 299 NYTCVAMSTLGVIE EEEEEEEECCCEEC c2-4 boundary boundary|Ig3_RPTP_IIa_LAR_like; boundary|FN3; boundary|FN3; 0.71 NA cosmic_phi
5 nes_diso P23468 306 STLGVIEAIAQITVKA ECCCEECCCCEEEEEC c1a-4 boundary boundary|Ig3_RPTP_IIa_LAR_like; boundary|FN3; boundary|FN3; 0.43 Medium: -34.875 cosmic_phi Medium|
6 nes_diso P23468 327 GTPVVTESTATSITLTW CCCEEEECCCCEEEEEE c1c-AT-4 boundary boundary|Ig3_RPTP_IIa_LAR_like; boundary|FN3; boundary|FN3; 0.5 NA cosmic_spacer
7 nes_diso P23468 479 IGNLVPQKTYSVKVLA ECCCCCCCEEEEEEEE c1a-AT-4 boundary boundary|FN3; boundary|FN3; 0.43 NA cosmic_spacer
8 nes_diso P23468 673 LLEQLEKWTEYRITVTA EECCCCCCCEEEEEEEE c1c-AT-5 boundary boundary|FN3; boundary|FN3; 0.38 NA cosmic_spacer
9 nes_diso P23468 773 AQWEFDDTTEHDMIISG CCCCCCCCCCCEEEECC c1c-AT-4 boundary boundary|FN3; middle|FN3; 0.12 NA cosmic_spacer
10 nes_diso P23468 786 IISGLQPETSYSLTVTA EECCCCCCCEEEEEEEE c1c-AT-5 boundary boundary|FN3; boundary|FN3; 0.38 NA cosmic_spacer
11 nes_diso P23468 861 GRKDMEPLTTLEFSE EECCCCCCEEEECCC c1b-4 boundary middle|FN3; middle|FN3; 0.43 Bad: -26.407 cosmic_phi_to_LIVMF
12 nes_diso P23468 881 TATDIHKGASYVFRLSA EECCCCCCCEEEEEEEE c1c-AT-4 boundary boundary|FN3; middle|FN3; 0.38 NA cosmic_spacer
13 nes_beta_diso P23468 889 ASYVFRLSARNKVGFGE CEEEEEEEEEECCCCCC c1c-AT-4 boundary boundary|FN3; boundary|FN3; boundary|FN3; boundary|FN3; 0.88 NA cosmic_spacer
14 nes_diso P23468 899 NKVGFGEEMVKEISIPE ECCCCCCCCEEEEECCC c1c-4 boundary boundary|FN3; boundary|FN3; boundary|FN3; boundary|FN3; 0.38 Bad: -26.131 cosmic_phi
15 low complexity P23468 962 NIPLLPMEQLIVPA CCCCCCCEEEECCC c2-5 boundary middle|FN3; middle|FN3; 0.43 Strong: -41.494 cosmic_phi
16 nes_diso P23468 980 TLTGLKPDTTYDVKVRA EEECCCCCCEEEEEEEE c1c-AT-5 boundary boundary|FN3; boundary|FN3; 0.38 NA cosmic_spacer
17 nes_diso P23468 1012 RTLPVDQVFAKNFHVKA ECCCCCCCCCCEEEEEE c1c-4 boundary boundary|FN3; boundary|FN3; boundary|FN3; boundary|FN3; 0.12 Bad: -27.028 cosmic_spacer
18 nes_diso P23468 1022 KNFHVKAVMKTSVLLSW CEEEEEEECCCEEEEEE c1c-4 boundary boundary|FN3; boundary|FN3; boundary|FN3; boundary|FN3; 0.62 NA cosmic_phi
19 nes_diso P23468 1059 MVEEVDGRATQKLIVNL EEEEECCCCCEEEECCC c1c-AT-5 boundary boundary|FN3; boundary|FN3; 0.38 NA cosmic_spacer
20 nes_diso P23468 1116 GKTNLDGMITVQLPE CCCCCCCEEEEECCC c1b-4 boundary boundary|FN3; boundary|FN3; 0.57 NA cosmic_phi
21 nes_diso P23468 1162 DEMELDELLKEISRKR HHCCHHHHHHHHHHCC c1aR-4 boundary 0.0 Bad: -26.566 cosmic_phi
22 nes_diso P23468 1184 REVELKPYIAAHFDVLP CCCCCHHHHHEECCCCC c1c-4 boundary 0.25 Weak: -30.825 cosmic_spacer Weak|
23 low complexity P23468 1266 GLIWVVGPVLAVVFII CCCCCCCCCCCCCHHH c1a-5 boundary 0.0 Medium: -33.395 cosmic_spacer
24 low complexity P23468 1267 LIWVVGPVLAVVFIIC CCCCCCCCCCCCHHHH c1a-5 boundary 0.0 Medium: -33.881 cosmic_phi_to_LIVMF
25 low complexity P23468 1270 VVGPVLAVVFIICIVI CCCCCCCCCHHHHHHH c1a-5 boundary 0.0 Bad: -24.086 cosmic_phi_to_LIVMF
26 low complexity P23468 1276 AVVFIICIVIAILLYK CCCHHHHHHHHHHHCC c1a-5 boundary 0.0 Bad: -28.321 cosmic_phi_to_LIVMF
27 nes_diso P23468 1315 PTDPVELRRLNFQT CCCCCCCEEECCCC c2-4 boundary boundary|R-PTPc-D-1; 0.43 Bad: -24.766 cosmic_spacer
28 nes_diso P23468 1338 PILELADHIERLKA CHHHHHHHHHHHHH c3-4 boundary boundary|R-PTPc-D-1; 0.0 Medium: -35.384 cosmic_phi Medium|
29 nes_beta_diso P23468 1476 THGLVQVTLLDTVELAT EECCEEEEEEEEEEECE c1c-4 boundary middle|R-PTPc-D-1; middle|Y_phosphatase; 1.0 NA cosmic_phi_to_LIVMF
30 nes_beta_ord P23468 1487 TVELATYCVRTFALYK EEEECEEEEEEEEEEE c1a-AT-5 ORD middle|R-PTPc-D-1; middle|Y_phosphatase; 0.86 NA cosmic_spacer
31 nes_ord P23468 1562 CFIVIDAMLERIKH HHHHHHHHHHHHHC c3-4 ORD middle|R-PTPc-D-1; middle|Y_phosphatase; 0.0 Bad: -27.216 cosmic_phi_to_LIVMF
32 nes_diso P23468 1633 TQIETGENVTGMELEF HCCCCCCCCCCHHHHH c1a-AT-4 boundary boundary|R-PTPc-D-1; boundary|Y_phosphatase; boundary|R-PTP-D-2; boundary|PTPc; 0.0 NA cosmic_spacer
33 nes_diso P23468 1640 NVTGMELEFKRLAS CCCCHHHHHHHHHC c3-4 boundary boundary|R-PTPc-D-1; boundary|Y_phosphatase; middle|R-PTP-D-2; boundary|PTPc; 0.0 Medium: -39.449 cosmic_spacer Medium|
34 nes_diso P23468 1738 TIVVMLTKLREMGR CEEEECCCCCCCCC c3-4 boundary middle|R-PTP-D-2; middle|PTPc; 0.29 Bad: -28.636 cosmic_spacer
35 nes_ord P23468 1775 AEYNMPQYILREFKVTD EEECCCCEEEEEEEEEE c1c-4 ORD middle|R-PTP-D-2; middle|PTPc; 0.62 NA cosmic_phi
36 nes_diso P23468 1847 GVGRTGVFITLSIVLER CCHHHHHHHHHHHHHHH c1c-AT-5 boundary middle|R-PTP-D-2; middle|PTPc; 0.0 NA cosmic_spacer
37 nes_ord P23468 1853 VFITLSIVLERMRYEG HHHHHHHHHHHHHHCC c1aR-4 ORD middle|R-PTP-D-2; middle|PTPc; 0.0 Medium: -37.664 cosmic_phi
38 nes_ord P23468 1853 VFITLSIVLERMRY HHHHHHHHHHHHHH c3-4 ORD middle|R-PTP-D-2; middle|PTPc; 0.0 Medium: -33.818 cosmic_phi
39 nes_ord P23468 1865 RYEGVVDIFQTVKMLR HHCCCCCHHHHHHHHH c1a-4 ORD middle|R-PTP-D-2; middle|PTPc; 0.0 NA cosmic_spacer
40 nes_ord P23468 1868 GVVDIFQTVKMLRT CCCCHHHHHHHHHH c3-4 ORD middle|R-PTP-D-2; boundary|PTPc; 0.0 NA cosmic_spacer
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.