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P28340_DPOD1 | DNA polymerase delta catalytic subunit   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_beta_diso P28340 90 QTEPLIFQQLEIDH CCCCEEEEEEEEEE c2-4 __ 0.86 NA cosmic_spacer_Pro
2 nes_beta_diso P28340 121 SVPVLRAFGVTD CEEEEEEEEECC c2-rev boundary 1.0 NA cosmic_spacer
3 nes_diso P28340 133 EGFSVCCHIHGFAPYFYT CCCEEEEEECCCEEEEEE c4-4 __ 0.62 NA cosmic_phi_to_LIVMF
4 nes_diso P28340 157 GPEHMGDLQRELNLAI CHHHHHHHHHHHHHHH c1d-4 boundary 0.0 Weak: -31.462 Weak|
5 nes_diso P28340 178 GGRELTGPAVLAVELCS CCCCCCCCEEEEEEEEE c1c-AT-4 boundary 0.5 NA
6 nes_diso P28340 179 GRELTGPAVLAVELCS CCCCCCCEEEEEEEEE c1a-AT-4 __ 0.57 NA
7 nes_ord P28340 219 LVAPARRLLEQGIRVAG HHHHHHHHHHCCCEECC c1c-AT-5 ORD 0.0 NA cosmic_spacer
8 nes_ord P28340 242 APYEANVDFEIRFMVDT EEECCCCCHHHHHHCCC c1c-AT-4 ORD 0.0 NA cosmic_spacer
9 nes_diso P28340 248 VDFEIRFMVDTDIVGCN CCHHHHHHCCCCCCCCC c1cR-4 boundary 0.0 Bad: -28.421 cosmic_phi
10 nes_beta_diso P28340 306 RIAPLRVLSFDIEC CCCCCEEEEEEEEE c2-5 boundary boundary|DNA_polB_delta_exo; 0.71 NA cosmic_spacer
11 nes_beta_diso P28340 331 RDPVIQICSLGLRW CCCEEEEEEEEEEC c2-4 boundary middle|DNA_polB_delta_exo; 1.0 NA cosmic_phi_to_LIVMF
12 nes_ord P28340 390 PDVITGYNIQNFDLPY CCEECCCCCCCCCHHH c1a-AT-4 ORD middle|DNA_polB_delta_exo; 0.0 NA cosmic_spacer
13 nes_diso P28340 402 DLPYLISRAQTLKVQT CHHHHHHHHHHCCCCC c1a-AT-5 boundary middle|DNA_polB_delta_exo; 0.0 NA cosmic_spacer
14 nes_beta_diso P28340 444 RDTKVVSMVGRVQMDM EECCEEEEEEEEECCH c1a-4 boundary middle|DNA_polB_delta_exo; 1.0 NA cosmic_phi_to_LIVMF
15 nes_diso P28340 451 MVGRVQMDMLQVLLRE EEEEEECCHHHHHHHH c1a-5 boundary middle|DNA_polB_delta_exo; 0.29 Medium: -35.752 cosmic_phi_to_LIVMF Medium|
16 nes_ord P28340 465 REYKLRSYTLNAVSFHF HHCCCCCCCHHHHHHHH c1c-AT-4 ORD middle|DNA_polB_delta_exo; 0.0 NA cosmic_spacer
17 nes_ord P28340 514 KDAYLPLRLLERLMVLV HHCHHHHHHHHHHHHHH c1c-4 ORD boundary|DNA_polB_delta_exo; 0.0 NA cosmic_spacer
18 nes_ord P28340 522 LLERLMVLVNAVEMAR HHHHHHHHHHHHHHHH c1a-5 ORD boundary|DNA_polB_delta_exo; 0.0 NA cosmic_spacer
19 nes_ord P28340 532 AVEMARVTGVPLSY HHHHHHHHCCCHHH c2-AT-5 ORD boundary|DNA_polB_delta_exo; 0.0 NA cosmic_spacer
20 nes_diso P28340 556 VSQLLRQAMHEGLLMPV HHHHHHHHHHCCCEECC c1c-4 boundary boundary|DNA_polB_delta_exo; boundary|POLBc_delta; 0.0 Bad: -26.985 cosmic_phi
21 nes_diso P28340 592 GYYDVPIATLDFSS CCCCCCEEEECCCH c2-4 boundary boundary|POLBc_delta; 0.57 NA cosmic_phi_to_LIVMF
22 nes_diso P28340 599 ATLDFSSLYPSIMMAH EEECCCHHCCCHHHCC c1aR-4 boundary boundary|POLBc_delta; 0.0 Bad: -27.994 cosmic_phi_to_LIVMF
23 nes_diso P28340 618 YTTLLRPGTAQKLGLTE CCCCCCCCHHHHCCCCH c1c-AT-4 boundary middle|POLBc_delta; 0.0 NA cosmic_spacer
24 nes_beta_ord P28340 752 VYGDTDSVMCRFGVSS EEECCCEEEEECCCCC c1a-AT-4 ORD middle|POLBc_delta; 0.71 NA cosmic_spacer
25 nes_ord P28340 761 CRFGVSSVAEAMALGR EECCCCCHHHHHHHHH c1aR-4 ORD middle|POLBc_delta; 0.0 NA cosmic_spacer
26 nes_ord P28340 786 FPSPIRLEFEKVYFPY CCCCCCCHHHHCHHHH c1a-4 ORD middle|POLBc_delta; 0.0 NA cosmic_spacer
27 nes_ord P28340 788 SPIRLEFEKVYFPY CCCCCHHHHCHHHH c2-4 ORD middle|POLBc_delta; 0.0 NA cosmic_spacer
28 nes_ord P28340 840 VANLVTASLRRLLIDR HHHHHHHHHHHHHHCC c1a-4 ORD middle|POLBc_delta; 0.0 NA cosmic_spacer
29 nes_diso P28340 864 AQDVISDLLCNRIDISQ HHHHHHHHHCCCCCHHH c1c-4 boundary middle|POLBc_delta; 0.0 Medium: -34.916 cosmic_phi_to_LIVMF Medium|
30 nes_diso P28340 872 LCNRIDISQLVITK HCCCCCHHHHHEEH c2-4 boundary middle|POLBc_delta; 0.0 Weak: -32.453 cosmic_phi_to_LIVMF Weak|
31 nes_diso P28340 958 LEQQLAKPLLRIFEPILG HHCCCCHHHHHHHHHHCC c4-4 boundary boundary|POLBc_delta; 0.0 Bad: -24.797 cosmic_spacer
32 nes_diso P28340 991 CKTVLTGKVGGLLAFAK EEEEECCCCCHHHHHHH c1c-4 boundary boundary|POLBc_delta; boundary|zf-C4pol; 0.12 Weak: -30.482 cosmic_phi_to_LIVMF Weak|
33 nes_ord P28340 1043 HLNALEERFSRLWT HHHHHHHHHHHHHH c3-4 ORD middle|zf-C4pol; 0.0 Medium: -39.834 cosmic_spacer
34 nes_diso P28340 1077 PIFYMRKKVRKDLEDQE HHHHHHHHHHHHHHHHH c1cR-4 boundary boundary|zf-C4pol; 0.0 Medium: -33.87 Medium|
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.