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P30622_CLIP1 | CAP-Gly domain-containing linker protein 1   ProteinAtlas   Cosmic   Proviz   Swissmodel
  • Cosmic Cancer Gene Census (CGC)


# candidates uniprotID start# sequence secondary class loc_DISO loc_CDD beta Ebind Score(NES) Cosmic Score(Cosmic) TOTALscore(Ebind|Stars)
1 nes_diso P30622 46 PSSETQEEFVDDFRVGE CCCCCCCCCCCCCEECC c1c-AT-4 boundary boundary|CAP_GLY; 0.0 NA cosmic_spacer
2 nes_diso P30622 271 LFAPVHKVTKIGFPS EEECCCCCEECCCCC c1b-5 DISO boundary|CAP_GLY; 0.29 Bad: -28.647
3 nes_diso P30622 381 ATSHVGEIEQELALAR HHCCHHHHHHHHHHHH c1d-4 DISO middle|DUF460 superfamily; 0.0 Weak: -30.741 cosmic_spacer Weak|
4 nes_diso P30622 402 HVLELEAKMDQLRT HHHHHHHHHHHHHH c3-4 DISO middle|DUF460 superfamily; 0.0 Medium: -38.094 Medium|
5 nes_diso P30622 473 EHARIKELEQSLLFEK HHHHHHHHHHHHHHHH c1d-4 DISO middle|DUF460 superfamily; 0.0 Bad: -29.527 cosmic_phi
6 nes_diso P30622 508 EKSRIMELEKDLALRV HHHHHHHHHHHHHHHH c1d-4 DISO boundary|DUF460 superfamily; 0.0 Medium: -37.793 Medium|
7 nes_diso P30622 511 RIMELEKDLALRVQEVA HHHHHHHHHHHHHHHHH c1cR-5 DISO boundary|DUF460 superfamily; 0.0 Bad: -26.125
8 nes_diso P30622 540 GDVDMSLSLLQEISSLQ CCCCCCHHHHHHHHHHH c1cR-5 DISO boundary|DUF460 superfamily; boundary|TMPIT superfamily; 0.0 Weak: -32.945 cosmic_phi Weak|
9 nes_diso P30622 548 LLQEISSLQEKLEVTR HHHHHHHHHHHHHHHH c1d-5 DISO boundary|DUF460 superfamily; boundary|TMPIT superfamily; 0.0 Bad: -28.75 cosmic_phi
10 nes_diso P30622 655 EFAELKTQIEKMRLDY HHHHHHHHHHHHHHHH c1a-5 DISO boundary|TMPIT superfamily; 0.0 Medium: -35.181 cosmic_spacer Medium|
11 nes_diso P30622 691 EMEALRAKLMKVIK HHHHHHHHHHHHHH c3-4 DISO boundary|TMPIT superfamily; 0.0 Medium: -38.759 cosmic_spacer Medium|
12 nes_diso P30622 724 HLVEMEDTLNKLQE HHHHHHHHHHHHHH c3-4 DISO boundary|CCDC14 superfamily; boundary|PRK00409 superfamily; 0.0 Bad: -28.07
13 nes_diso P30622 736 QEAEIKVKELEVLQ HHHHHHHHHHHHHH c2-4 DISO boundary|CCDC14 superfamily; boundary|PRK00409 superfamily; 0.0 Bad: -27.642
14 nes_diso P30622 796 QLEAAEKQIKHLEIEK HHHHHHHHHHHHHHHC c1a-AT-5 DISO boundary|CCDC14 superfamily; middle|PRK00409 superfamily; 0.0 NA cosmic_spacer
15 nes_diso P30622 828 RELKLTNLQENLSEVS HHHHHHHHHHHHHHHH c1aR-5 DISO boundary|CCDC14 superfamily; middle|PRK00409 superfamily; 0.0 Medium: -33.882 cosmic_phi Medium|
16 nes_diso P30622 831 KLTNLQENLSEVSQ HHHHHHHHHHHHHH c3-4 DISO boundary|CCDC14 superfamily; middle|PRK00409 superfamily; 0.0 Bad: -27.575
17 nes_diso P30622 841 EVSQVKETLEKELQILK HHHHHHHHHHHHHHHHH c1c-5 DISO boundary|CCDC14 superfamily; middle|PRK00409 superfamily; 0.0 Medium: -35.638 cosmic_phi_to_LIVMF Medium|
18 nes_diso P30622 887 QFNMLSSDLEKLRE HHHHHHHHHHHHHH c3-4 DISO middle|PRK00409 superfamily; 0.0 Weak: -31.407 Weak|
19 nes_diso P30622 894 DLEKLRENLADMEA HHHHHHHHHHHHHH c3-4 DISO boundary|PRK00409 superfamily; 0.0 Medium: -34.142 Medium|
20 nes_diso P30622 922 AKEKLENDIAEIMKMSG HHHHHHHHHHHHHHHCC c1c-4 DISO boundary|PRK00409 superfamily; 0.0 Bad: -21.848 cosmic_spacer
21 nes_diso P30622 940 NSSQLTKMNDELRLKE CHHHHHHHHHHHHHHH c1d-4 DISO boundary|PRK00409 superfamily; 0.0 Weak: -32.801 cosmic_phi_to_LIVMF Weak|
22 nes_diso P30622 971 NASFLQKSIEDMTVKA HHHHHHHHHHHHHHHH c1a-4 DISO 0.0 Bad: -29.627
23 nes_diso P30622 1150 KMEEFRKEIETLKQ HHHHHHHHHHHHHH c3-4 DISO middle|UPF0242 superfamily; 0.0 Bad: -23.901 cosmic_phi_to_LIVMF
24 nes_diso P30622 1248 ELEKLRNEVTVLRG HHHHHHHHHHHHHH c3-4 DISO boundary|UPF0242 superfamily; 0.0 Medium: -33.338 cosmic_phi Medium|
25 nes_diso P30622 1279 DKVKLELKVKNLELQL HHHHHHHHHHHHHHHH c1a-4 DISO 0.0 Medium: -34.371 Medium|
26 nes_diso P30622 1281 VKLELKVKNLELQL HHHHHHHHHHHHHH c2-4 DISO 0.0 Bad: -25.671
27 nes_diso P30622 1283 LELKVKNLELQLKENK HHHHHHHHHHHHHHCC c1aR-4 DISO 0.0 Bad: -29.521
28 nes_diso P30622 1322 QIDFLNSVIVDLQR HHHHHHHHHHHHHH c3-4 DISO 0.0 Bad: -26.439 cosmic_spacer
29 nes_diso P30622 1373 KKPRLFCDICDCFDLHD CCCCEEECCCCCCCCCC c1c-4 DISO 0.38 Bad: -25.345 cosmic_spacer
  • candidates: if the segment is located in the disordered or boundary region, flagged with "_diso"; if the segment is located in the ordered region, flagged with "_ord"; if the segment's beta-strand content is over 0.5, flagged with "_beta"; if the segment is annotated as NES in the NESdb or validNES, flagged with "ExpNES_" instead of "nes_".
  • sequence: Hydrophobic positions are colored in red.
  • class: NES classes 1a, 1b, 1c, 1d, 1aR (reverse class of 1a), 1cR, 2, 2-rev (Rev type class 2), 3, and 4. The first letter "c" is for "class", and the number after hyphen ("-") is for the number of key hydrophobic positions. For example, c1a-4 means class 1a with the non-hydrophobic phi0 position. c1a-5 is for class 1a which have all hydrophobic residues in their phi0-4 positions.
  • loc_DISO: location of the segment with respect to the ordered/disordered regions
  • loc_CDD: location of the segment with respect to the conserved region annotated in the Conserved Domain Database (CDD)
  • beta: beta-strand content in the middle of the segment
  • Ebind: binding energy; Strong (less than -40.0), Medium (-40.0~-33.0), Weak (-33.0~-30.0), or Bad (higher than -30.0); Generated models can be downloaded via icon.
  • Score(NES): how many passes for the criteria: i) not located in the ordered region, ii) do not have beta strand in the middle, and iii) Strong, Medium, or Weak Ebind scores
  • Cosmic: if the key hydrophobic residues are mapped to the COSMIC mutation position, flagged with "cosmic_phi"; when the changed amino acid of the mutation position is L, I, V, M, or F, flagged with "cosmic_phi_to_LIVMF"; if the spacer residues are mapped to the mutation position, flagged with "cosmic_spacer"
  • Score(Cosmic): 2 stars with "cosmic_phi" and the changed amino acid is not L, I, V, M, or F; 1 star for "cosmic_phi_to_LIVMF" or "cosmic_spacer" (Score(Cosmic) is present for only segments with the 3 stars of Score(NES))
  • TOTALscore: Score(NES)+Score(Cosmic); The Ebind category (Strong, Medium, or Weak) is annotated together.